Array 1 1075-314 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOII01000043.1 Escherichia coli strain STEC 2591 STEC2591_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1074 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 1013 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 952 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 891 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 830 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 769 29 100.0 32 ............................. ATTTTTCAGACTTATCAAAATAATCCTTTAAT 708 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 647 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 586 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 525 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 464 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 403 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 342 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25504-26630 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOII01000070.1 Escherichia coli strain STEC 2591 STEC2591_contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25504 29 100.0 32 ............................. CCGTAAGGGCAATTTATCCAATAAATTTTTAG 25565 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 25626 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 25687 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 25748 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 25809 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 25870 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 25931 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 25992 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 26053 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 26114 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 26175 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 26236 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 26297 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 26358 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 26419 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 26480 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26541 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 26602 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //