Array 1 20267-19938 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHN01000018.1 Erwinia amylovora ACW56400 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20266 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 20206 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 20146 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 20086 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 20026 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 19965 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31836-29730 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHN01000018.1 Erwinia amylovora ACW56400 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31835 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 31774 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 31713 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 31652 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 31591 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 31530 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 31469 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 31407 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 31346 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 31285 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 31224 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 31163 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 31102 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 31041 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30980 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 30919 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 30858 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 30797 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 30736 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 30674 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 30613 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 30552 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 30491 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 30430 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 30369 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 30307 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 30246 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 30185 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 30124 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 30063 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 30002 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 29941 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 29880 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 29819 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 29758 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44967-42743 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHN01000018.1 Erwinia amylovora ACW56400 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44966 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 44905 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 44844 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 44783 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 44722 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 44661 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 44600 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 44539 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 44478 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 44417 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 44356 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 44295 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 44234 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 44173 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 44112 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 44051 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 43990 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 43929 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 43868 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 43807 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 43746 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 43685 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 43624 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 43563 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 43502 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 43441 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 43380 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 43319 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 43258 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 43197 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 43136 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 43075 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 43014 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 42953 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 42892 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 42831 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 42770 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //