Array 1 503315-499379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017834.1 Silvanigrella aquatica strain MWH-Nonnen-W8red chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 503314 29 100.0 32 ............................. TAGGATTTAACGTTTCAGCATCAATTCTAAGG 503253 29 100.0 32 ............................. TGGGAACATGAATGTGCAGAACATTTTTTGTA 503192 29 100.0 32 ............................. TATTAATTTAAGAAAAGAAGCAATATTAATCT 503131 29 100.0 32 ............................. ATTTTTCGCTTCTTTTGTTGTTCTAAGGGATA 503070 29 100.0 33 ............................. ATCTACTCTCGGAATATCCTTTGCTGCATATCC 503008 29 100.0 32 ............................. TCCCTCCTGCTTTTTTTGCTCCCATATGTACA 502947 29 100.0 32 ............................. ATATAATGTCTTTGATTTGGAGTCTAATAACA 502886 29 100.0 32 ............................. TCTTCAAATTCTTGATCAGCAAATCTCAAATT 502825 29 100.0 32 ............................. AAAGTAACAGAGATAAAAACTCGGTTGAGCAA 502764 29 100.0 32 ............................. TTTTTAGCAAATGTTACTTCTCTGTTGATTAA 502703 29 100.0 32 ............................. ATGATGTTTTAGATGTGCTTTTTGAAAAGTTG 502642 29 100.0 32 ............................. TTCCTGTGGCAGAAGTTCCTGTGGCAGAAGTT 502581 29 100.0 32 ............................. TCACTTAGTGAAGAAATAGAATACAAAAAAAA 502520 29 100.0 33 ............................. AAATTAAAAAAGCCTGTCACAATTTTATGAAAA 502458 29 100.0 32 ............................. CCTTATTCAAGTGGAAAATCCATTTTTAAATC 502397 29 100.0 32 ............................. AGAAAGCGAGATATGAGCGATTAGAGAAGCGC 502336 29 100.0 32 ............................. ATTTTATGGTACGATATTTGCAAGCTGTTCTG 502275 29 100.0 32 ............................. TTTTCAAATTTGCTTAAAGATGAGGGTATAGA 502214 29 100.0 32 ............................. GCTTAGAAGGTGCGCTCTCATAGCCTCAATTT 502153 29 100.0 32 ............................. ATCGAAAAGATGTTATGAGAGAATTGCTAAAC 502092 29 100.0 32 ............................. ATCTGTCGCTTTAATAAATTTGATTATCTGAA 502031 29 100.0 32 ............................. TGTATAAATAAGATATATACCTGACACTGCTA 501970 29 100.0 32 ............................. AAAATGATGCGTTAGAAATGGTAAAATCCCTT 501909 29 96.6 32 ............................T AATGTATTTCTATTTGAAATCGCATCAAAATA 501848 29 100.0 32 ............................. ATATAGATGTGCTTTTTTTACTTGAATATCAT 501787 29 96.6 32 ............................T TTTAAATGATCTTGCTGGTGCAAAATTAAAAG 501726 29 100.0 32 ............................. GTGGTGATATTCCTGCAATTATATCAAGACAA 501665 29 100.0 32 ............................. GAACAAATAAACGCTATAAAGTAACGCTTATT 501604 29 100.0 32 ............................. TAATAATTTCTAAAATTAATATATAGTCATAT 501543 29 100.0 32 ............................. TTAGAAGACGTCTTCAATGCCCTAATTTTAAA 501482 29 100.0 32 ............................. AATGTAATACAAGAACAATAGACAGAACGCAT 501421 29 100.0 32 ............................. GACTATCATCTAGCGAAGCGATAAACTCGTGG 501360 29 100.0 32 ............................. TGTGCTGTTTCTCTTTTAACATGAAAGAATGT 501299 29 100.0 33 ............................. GTTCCACTGGTTTACCATTTCCGAGATTCTTTC 501237 29 100.0 32 ............................. AAGATTACAAAAAATTTAAAATAATTGAAGTT 501176 29 100.0 32 ............................. CTATTTATGAATTTCTACCTTCAAAAGTTGAA 501115 29 100.0 32 ............................. GATCTGTAGTAAATCAAAAGGATTTGGCTGAG 501054 29 100.0 32 ............................. AACTTTTCGATTTCTGAGTTGTTACTTGATTA 500993 29 100.0 32 ............................. TAAATTTCATCATCTTCTGCTTCTCTTTGCGC 500932 29 100.0 32 ............................. GCTTTATAACCTTCATCATCTTTTCTTCCAAT 500871 29 100.0 31 ............................. AAGCTTTAAAATTAATAGTATCCCTAACTGC 500811 29 100.0 32 ............................. ATTTATCATTGATTTTCTTTGCATTACTCATA 500750 29 100.0 32 ............................. TGTTTTTGTTTCTTTTATGATTTTTTGTTGAT 500689 29 100.0 32 ............................. ATTGTCATAGGTTAGGTGTTGATAATAAAATT 500628 29 100.0 32 ............................. GCATGTAATATAGCAACAGCACCACCGAGAGA 500567 29 100.0 32 ............................. TTGACTAAAAATCGTCATAACGTTCTCCTTTT 500506 29 100.0 32 ............................. GGTTGCAGTGTGCGAGATTTACTCAATGAAAG 500445 29 100.0 32 ............................. AGAACTTGGTTATCCTGCCTCTAAATTTTTAG 500384 29 100.0 32 ............................. GGCTGAACAACTAAACCTCTGTTGAATTTTTC 500323 29 100.0 32 ............................. GAAGTCGAACTTAAAAAAGATGATGAAAATAA 500262 29 100.0 32 ............................. ATAATAAGGGTAATGATGTTGAATTAAAAGAT 500201 29 100.0 32 ............................. GTATTTCAATTTCTGACTCAAGAGTAATTGAA 500140 29 100.0 32 ............................. CCATTGCGTAAATTTCAACATCAATTTGATTA 500079 29 100.0 32 ............................. TAGGCATTTAACGGGATGGGTTTGGGGCACAA 500018 29 100.0 32 ............................. ATTATTTATAATTCTTTGTTCTGTTGGCAATT 499957 29 100.0 32 ............................. TTCACGACTCATAGTTAATCCCTTTTTACATT 499896 29 100.0 32 ............................. TATATTCGATTTTTCTGAAAACAAAGACGTAC 499835 29 100.0 32 ............................. GTTTTCTTTACCAAGTTTAGGTTATAATTTTA 499774 29 100.0 32 ............................. CCATCATGTGAAGTCATAAGAACGACCTCAGG 499713 29 100.0 32 ............................. ATTTGATCGAAGCAAAGTTGATCCATATTCAA 499652 29 100.0 32 ............................. GACAGTGTCACCCTCGCCAACAGGAAGCCCGA 499591 29 100.0 32 ............................. AGGCTTACCCAGTAAATATTGTAAGGGTTCAA 499530 29 100.0 32 ............................. TGAATTTCTCAAGCGGTCGCATGGGGTGGCTA 499469 29 96.6 32 ...........................T. TTGATGTAACATCAATTCTTTGTAAATCTTCA 499408 29 79.3 0 ...............A.AAA....T..A. | T [499385] ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.5 32 CATTTCCCCACGTATGTGGGGATGATCCG # Left flank : GTATTGTAGAAGACATTCAAGAATTACTTGGATTAAATGAGATTAATTCAAAAAATTTTGATACAGATCCCGCAGCACCTGGATTTCTTATAGGTGAAAACTCTGTAACAGCAGGTGGAAAGAATCATGGTGATCATCATTCTTGAATGCGTCCCCCAAGGATTGAGAGGAGAACTAAGTCGTTGGCTTATTGAACCTCAAGCTGGAGTCTTTGTTGGAAATATCTCTGCTTTGGTACGTGAAAAAATTTGGTTGAAATGCCAAGAGGAATCAAACGGAGGCAAAGGAACTCTGATTTATAACTACAACAATGAACAGGGCTACGAACTTGTTACGTTTGGGGACTCAAAAAGACAACCTATTGAATTTGATGGATTAACTCTTATAAGGCTTAATAAAAACTAATGGAACTACGTTATTTGAAAAGTGAATATGAATATTTTATATATTTACATGACATAGATGATAAATTATTAAACTTTTATCTGAAATGTCTTAAT # Right flank : TATTCAAATTATTTAAATGAAACAACATTCTATGATGCGCTTGAGATCAATAATTCCGCCGTTAAAGTATGAGGTGATAAAATTTTAAAACACATTGCCACAGGACTTGTAAAAATTATAAAAGAAAACTTGGACACTGATTGGGCTCTTAAAGAAACATCACGGACAAAGATTAGAATGGCAAAAAGAATGAATAAAGAAAATAATTTAAAAAAGCTTGTTGGCTCTGAAGTATATGATGTTTGGGTTAATATGATTAAAATATTAGTGCCAAACGCTCGTACGCATCGAATTTCAGTTATTGTAGCAGGAATGCTTCATTACGCTTTGGATCAATCTTACTTAAAGGAACATAAGGACAATTCACTTACTCATATTCTTCAAGAAAGCTATGATAATAATGAAGCAGATGAGGAATTATTTAATGCTATTAAATTAATTTTTAATAAAGCAAAAGTAAAATACACACGAAAGAATTCTAAAGGAGATCAATACTGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTTCCCCACGTATGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //