Array 1 8193-10789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPJ01000476.1 Xanthomonas oryzae pv. oryzae strain YN06 scaffold477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8193 31 100.0 37 ............................... TTGCCAAGTGTCCTCACAATGGTCAGAGTTTGATCCG 8261 31 100.0 34 ............................... GGGATCGATTTGCCGTGCCTGCTCTTGTTGCGCA 8326 31 100.0 35 ............................... ACAACACCGCTCGCATCGCCCGTCAACTCAATGCG 8392 31 100.0 35 ............................... TTCGTACCGCCGTTTAGCCAGCCCCTCTAGCTTGA 8458 31 100.0 35 ............................... AAGTTTAACTGGGACAGTCCTAAGCAGCGGTCTGC 8524 31 100.0 34 ............................... TCAAGAGCGTCGATCAGCAACAGCAGACGTTGGT 8589 31 100.0 35 ............................... TCGGCAATCACAACCTCACCGGGTTGCAGGTCGGC 8655 31 100.0 36 ............................... TGTGCATTTGCAGTTATGTTGCCCTCAGCCTGTGCC 8722 31 100.0 34 ............................... GCAATCACATCTTCAACAGCCGTACCGGTGGCGA 8787 31 100.0 34 ............................... CTCGTCCTGCAAGGCCCCACCAGCCTGGCTATCG 8852 31 100.0 35 ............................... ATCCATGGACTCACCAAGGTTGCTGGTGAAGGTGG 8918 31 100.0 35 ............................... TCTTCCATCTTTCCAAGCTGCTTTGATCGGAAACG 8984 31 100.0 35 ............................... GGTCTCAGTCTGATATTGCAAAGGCTGGCGGCGTT 9050 31 100.0 35 ............................... TTCAGCGCTGCGGACTCAAGCACTCCCATGTGCTC 9116 31 100.0 36 ............................... CAAATTGTGTCGCCGGCAGGCGGTGCGCGGCTAGAG 9183 31 100.0 36 ............................... CCTTTGGATCTTATGCAAGGGCACCTGGCCAAACAT 9250 31 100.0 34 ............................... TCTACGCCGGGCGACCTGAGCTCAAAGTCTGTTG 9315 31 100.0 33 ............................... CGTCAGCATCTGTGACAGTACCGATGACATCCC 9379 31 100.0 36 ............................... TGTCCACCCCGTTTGACAATGGCGTGGCTGCTGCGT 9446 31 100.0 35 ............................... GGTGCAGACCTCGAGCACATAACCTACCGCAGGCG 9512 31 100.0 34 ............................... TGCCACGGCCACGAGATAGCTCGTGGAATAGATC 9577 31 100.0 34 ............................... GCAATGGAGACAACCCATTTGCAAACTACCCCGG 9642 31 100.0 33 ............................... AGTAAATACATCTGGCCGTTTATCGGATCAAAC 9706 31 100.0 34 ............................... ATTAGCACATATGGTTCAGTGCTGATCACGTCTC 9771 31 100.0 35 ............................... GGTGCTGATCACGTCTCTTGCTATTCTGGTCGCGG 9837 31 100.0 35 ............................... AATACCAGGGCTGCACCCTCTGCATCGCCTTTAAA 9903 31 100.0 34 ............................... GCGAAAGCATAGCGGAGCGAGTCGATAGCAGCCG 9968 31 100.0 35 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCC 10034 31 100.0 36 ............................... TTGCAAGCAGACTTACCAATGCCTGCCGTATTACAA 10101 31 100.0 36 ............................... TTGTGGCTGAACAACGAAGGTGACACGAAGAACATC 10168 31 100.0 35 ............................... ACGATGTGATCAATGGTTCGTGGAGCATCTCCCAA 10234 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 10300 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 10364 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 10431 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 10496 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 10562 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 10627 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 10694 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 10759 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 40 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //