Array 1 151738-150448 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJLS01000011.1 Dickeya undicola strain FVG10-MFV-A16 Dickeya_sp._FVG10-MFV-A16_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151737 28 100.0 32 ............................ TTAATCTGAGCATCGGCCAGCTCATTGCGTTC 151677 28 100.0 32 ............................ GTAGCCGTCGCCGGAGCCGTCGCCGGAGCCGT 151617 28 100.0 32 ............................ ATGTTCGTTTTTCAACACGTCAGCGTAGAGAC 151557 28 100.0 32 ............................ GAGCAAAGGCTGAACATAAGCGCTTCATGAAC 151497 28 100.0 32 ............................ GGAATTGAGGTCAAAGACGGCGCGCGGGTTTC 151437 28 100.0 32 ............................ GATTGACAACAGTCCAGGACACGTCATTGAAG 151377 28 100.0 32 ............................ TGGCCGAGATCCATCAGGAAAACAGCCCGGAC 151317 28 100.0 32 ............................ AGCCACACATCACGCGCAAATTTTATTCGCTC 151257 28 100.0 32 ............................ GCGATAATCACAGCAACAGAAATCAGCACACC 151197 28 100.0 32 ............................ GAAAACCGTTGCGGCTTATACCGACATCACGC 151137 28 100.0 32 ............................ ACCCAACCGAACGCTGCGAACTTTTCAGTAAG 151077 28 100.0 33 ............................ AGCAGGTCATCCAGGGCATCCCAGGGGTCAGGC 151016 28 100.0 32 ............................ GTACTTCTGCGCCTCTGCCTGCGTTGCCGGGT 150956 28 100.0 32 ............................ GCTTTTCGTGATGTATGTTTGCATTAGATAAA 150896 28 96.4 32 ...........T................ GGCCACGGGCTCGGCTGTCGCCACTGCGCTGA 150836 28 100.0 32 ............................ CGGCTCCGCCATGCGATCAGCTCACTGATCGT 150776 28 100.0 32 ............................ TGCTCTGTCAGCTTTACCCAGGTGAATAAAAA 150716 28 100.0 32 ............................ CATTCGCAGGAAGCGGAACAATGGGTATGGCT 150656 28 100.0 32 ............................ TGCGGCCTGGATTGCGTTATCGAGAGCTGTCA 150596 28 100.0 32 ............................ TTCCTTTCTCTTACGGTACAGACGGTGGCGTA 150536 28 100.0 32 ............................ TGAAAGACAACGCGCTGTCGGTTTTTGCGTGT 150476 27 78.6 0 ...........T.C......A..-..CG | GG [150453] ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGATTATACCGCCATCACCGAACCGCTACCGGTGCCCGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGTGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCGTCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACCAACCGGTCGCTGGGGTGTTCTCCAGCTACGGGTTAAGCGCCGCCACCACTATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGTAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGGCGGTTTTTCTTTAACAATCAGGTGATAAGCGATAATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGTGACACGGTTTATCCCGCACGAAACCATCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTGTGTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGGTGGTTCAGGCCCGCGATGCATACGCGGCCGCTGGCGATAAGGTAGACACCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160361-163389 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJLS01000011.1 Dickeya undicola strain FVG10-MFV-A16 Dickeya_sp._FVG10-MFV-A16_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160361 28 100.0 32 ............................ AAAAATGAGTTCATTGTCTCTTAACCCGATGT 160421 28 100.0 32 ............................ GAACGCAGAAAATACTGAATCCGCCTTAATCT 160481 28 100.0 32 ............................ AAAGCCTAACTGGGACGCAACTGTTAAGCCAA 160541 28 100.0 32 ............................ CATACCGTGTCACCGCTGTCACCAGATGGTGG 160601 28 100.0 32 ............................ CGTGGCAGATGACCGGCTGAATAATTCAATGC 160661 28 100.0 32 ............................ GGGGATTAAATCAGGAGTAGTAGCATGAAAGA 160721 28 100.0 32 ............................ TTGCTGCCCGTATGGTGTAGTTGGTGATCGAT 160781 28 100.0 32 ............................ AACATGAAAAAACGTCTATCCGCCGCACAACA 160841 28 100.0 32 ............................ CAGGTCGCGGCACGCGTCCTCTTCACGTCGCA 160901 28 100.0 32 ............................ AGCACAGGAATTGGGAACCGCTGCGCACGCTC 160961 28 100.0 32 ............................ ACGTTCGATGATGTCCAGCTGATAGTCGCGGA 161021 28 100.0 32 ............................ GATGGGGGCGCATATATGGATGAGTACTGTGT 161081 28 100.0 32 ............................ TATTAGTCCGCATTGATTTTCTTCCACGTTCG 161141 28 100.0 32 ............................ CCAACCCCCTTGAGAGCGTCCGTCACTTCCGC 161201 28 100.0 32 ............................ TTCAATGTCTACCAACCATGAGCCATCAGACA 161261 28 100.0 32 ............................ AATGAAATCGTGACGGCTGGTTTGTGTTAGGC 161321 28 100.0 32 ............................ GGCTCGGGGTTGTGCCGGGGCTGCTGATGCCG 161381 28 100.0 32 ............................ TCACCAACCATGTCAACGTTGCATAGAACATT 161441 28 100.0 32 ............................ GCTTCTGCCTGTAGGCGACGCTTAGCAAAGTA 161501 28 100.0 32 ............................ AGCGACGGCTCACGACGCTGGCTTACCCGTGA 161561 28 100.0 32 ............................ GCCTGCCGATAGACCGCTACCAGCCGGTCAAA 161621 28 100.0 32 ............................ TGCAAAACGAGATCCGCAACGCGCTGGCGGGC 161681 28 100.0 32 ............................ CCGAAGGGACAAACATCAGGTTCGAATCGGCG 161741 28 100.0 32 ............................ TGGGGTGAAGCGGGGGGGTTTTGATGATAGAT 161801 28 100.0 32 ............................ ATCATCATTGTGAAGCACGTCAGCATACAGCG 161861 28 100.0 32 ............................ AGATCACCTCGCGCGTAATCCTGAATGATGCG 161921 28 100.0 32 ............................ GCCACTGGCTGGGGCACCCGAACGGCTTCAAA 161981 28 100.0 32 ............................ GAACGGCTTCAAATCGAAACGTGAATGGAAGC 162041 28 100.0 32 ............................ TGAATCCCACATCATCAGGCTTGCGGTCATTT 162101 28 100.0 32 ............................ ACAACGGAAAGGGCACTGCATTTGACCACCTT 162161 28 100.0 32 ............................ TCTTCGCCTGGTTAGTTCCGGCACTAGTCTAT 162221 28 100.0 32 ............................ TTGCCGCAGAAATGCCCGCACTGTCAGAAAGA 162281 28 100.0 32 ............................ GGCACGCTGGCAAACTGGCGGAACAAGGGACG 162341 28 100.0 32 ............................ TGCATCACGGTACTGTACCAGATTGTATAGAC 162401 28 100.0 32 ............................ AGCGCCGTCGCAGCGGTACGCTTGTACCGGTC 162461 28 100.0 32 ............................ CATCGGAGCTACGGCTATGAGCATGATGTTTC 162521 28 100.0 32 ............................ TTTGCCGCCTGGGTCAAATTATTCCCGTTTGC 162581 28 100.0 32 ............................ AGATTAAGAAGGCCCGGCAAACGCTGGGCTGT 162641 28 100.0 32 ............................ GGTTCGAGTCCGGCGCTATTCATCCCGCCGCT 162701 28 100.0 32 ............................ ATCAGTCGACAGCGAATAGGTTTCTCCTGTGT 162761 28 100.0 32 ............................ ATTACCGGCGATGCGGCAGTTCTGGCCACTGC 162821 28 100.0 32 ............................ AGCTACGCGAATGCGGAAGTCAAGTTGGCGAA 162881 28 100.0 32 ............................ GGATGCCGCCCTGGGTTCGTCGTGTGGCCCGG 162941 28 100.0 32 ............................ GAAAAATGGGTGAATAAAACCCACATGCAGCG 163001 28 100.0 32 ............................ GTACCGGAGTCCCCTTTAAGGATTTTGAATTT 163061 28 100.0 32 ............................ TATCTCTGCGATACGCCGCGCTCGCTGTGTCA 163121 28 100.0 32 ............................ AATCAAACTGACGGCTAAGTCCCTCGGTATTT 163181 28 100.0 32 ............................ GCGAAGGCATGGACTTTGTTACGGATGTTATT 163241 28 100.0 32 ............................ CAAAAAGAGCCGCAGGCGGCACAATATCGCCT 163301 28 100.0 32 ............................ ATAGTGTTCTCTTGGGTTAATGATGTGGCAGC 163361 27 85.7 0 ....................G..-..CG | AG [163379] ========== ====== ====== ====== ============================ ================================ ================== 51 28 99.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACACTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGGTTTCCCTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGCTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAATTAACGAGAATCAGCCTAGCACAACCCAAGCGGTAAAATGAATGACACCAGAAACACTTTTCCCGCATCAATACCCTTTTTTTCAGCCACCTTTTTCAGCATTGAAAAATCAATAAGTTACCAACAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGCAGGCTGAAATACAACGGGTTAGAGTCAATAAGTTACG # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCGCGGCAGGGAAGCCGCGCAAGCCTGTGCCGTGTTGGGAACACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACGCGGTTTATCCCGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTGCCGACGGTGGTGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCACCGCCGACCGGCGGACCGGTGACGGCGCGCCGCTGTTGCCCTGCTGCGTCAGGCGGAATGCGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //