Array 1 101324-101941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCW010000013.1 Clostridioides sp. ZZV14-6387 ZZV14-6387_273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 101324 29 100.0 35 ............................. AAAATATAATCGAGAGAATCTTCATTAGTATTAAT 101388 29 100.0 37 ............................. ATTGTTTTGATGTACAGTGATGCATATAGTAATTATA 101454 29 100.0 38 ............................. TTCATAGCCTTTGCGTATTCATCTGTAAATTTTACAGC 101521 29 100.0 37 ............................. TAATGATTTGCTCCTGCCCCCAATAAACTATTATCAT 101587 29 100.0 36 ............................. GCTGGTAGTGCAGGTAGTGAAGTAACTTTGACATTA 101652 29 100.0 37 ............................. AAGTTTAAACAAAGTAAATCAAAATATAAAAATATGA 101718 29 93.1 37 ............T...............T AATTTTAATTCTCTTTGAATACCTTGTGGGTCTGTAT 101784 29 96.6 36 ...............A............. AGTGTAACCATTAAAATTATTGGTATTTCTATCTTA 101849 29 93.1 36 A..............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 101914 28 75.9 0 AA......C...........-.CT....A | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 95.9 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AACCTATTATTGTTTATAGTAGATTTTATTTCAATTAAATGTTTTTCAGCATCTTTTTTCCTTTCATAACTTCCATAACTTTTCTGTTTTATTTTACCGGTTTCTTCCACATACTCCACATATACATGAAATTTTTCATTTCTTTTTCTTATGAAGGCTGATTTAATATTCATAAGAGCACCACCCTTTGAGTTAATTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAGTATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATATAAGGCATCGAGAAGGTCTGATAAGTGTTATCAATTGCACTGCTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGAAAATACTCAACTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAATTATGTGCTATAATAGTTGTAAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGCAAAAAGCCACTCTCGTGCAAAGAGTGACCTAATAGTTGAATTTAAATTTATGTTTAAATCCAAAAAATGATTGAGTTTTAATGAACTCCACTCTACGACTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTATAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACAAAATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9422-8806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCW010000017.1 Clostridioides sp. ZZV14-6387 ZZV14-6387_277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9421 29 93.1 38 G.....G...................... ACTATAGCTCCTGCTTCTCCAAATAAGATTCCTCCCGC 9354 29 100.0 33 ............................. TCAGAAAGTTGACCATCATTTATCATGTTTAAA 9292 29 100.0 36 ............................. TTTATCTAGTGCGTCCAACTCTTTTTTTATACTTGC 9227 29 100.0 36 ............................. AATGTAATTCCTTGAACAAAGTCTGAAAAGAAATCA 9162 29 100.0 37 ............................. ATAGTACTTGGAGTTGCAGCTGCGATGTTAGTGTATA 9096 29 100.0 37 ............................. ATACTAGGTCGACATTTCTTTTTTCTATATTATCTTT 9030 29 100.0 37 ............................. TTTAATACATCATTATTACCTTTTTTAACTTTATACT 8964 29 100.0 35 ............................. TGCGTTAACTGCAATAATGCTGAACTCATTTCTTG 8900 29 93.1 38 .........................G..T TCAAAAATACGTATTGATGTTTGTATTGTAGCCATTTC 8833 28 79.3 0 G..............C....AC.-....A | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 96.5 36 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCAAACACGACTAAGAGTGACTTTGATTTTAAACTTACAATCAAGTTTAAAAGAAATAAACATTAATTTTTAGAACTTCACTCTAGTTTCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTCAGGTAGGTGTTTTTTATTGAAAGGATGTGATAATAATGTAAAAATTTTACGTATATAGTATAATAGTGCTATAAAATAAGTATTATGTGAGGTGATTGTTGTGTTTTGTTCAAATTGTGGTTATGAGATAACTGGTGCAGGCAAATTTTGCTCAAATTGTGGAACAGCTACATTAGCAGATAAAGTTAACAATGATGATTTATTTATAAATGTTCATGGAAAAGAATTAAATCTGACTAATATTTATAAAGAAACTAAAGGAGATAAAATCTTAGCAATTGATATTGCAATGAAGTTACTAGGGCTGGACATAAAAGAGTGTAAAAATATTATATATCCAGCTTTTAAAGAATTAAGTGAAAAAATAAATATCGAAGAGGAAAAAGAGATATTGAGGGAAGATGAGTATAAACAAACTAATGTACTTGAAGATGATGTTGCTCGTTGCCCTAGGTGTGGCTCTGTTTCATTGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3428-4046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCW010000024.1 Clostridioides sp. ZZV14-6387 ZZV14-6387_284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3428 29 100.0 37 ............................. AATTTGACATCAAGTTGTAATTCATTAAAAACTCTAG 3494 29 100.0 35 ............................. TCAGAACTCTCAGCGAAAACGGCAGGAGCATCCGC 3558 29 100.0 37 ............................. AAAACTGAGTAGATTGAATAGTCAAGCGAGATTAACA 3624 29 100.0 37 ............................. TAGTTTTTGACATTACTTTAGCTAATGCTAACTTCTC 3690 29 100.0 37 ............................. TAGCCATATGAAGTGATTTTCCCGAGCCGGGAGTTCC 3756 29 100.0 37 ............................. AGTAGCAATTTTCTTTTTTATTGAAGTTTTTTTCATT 3822 29 100.0 36 ............................. TCAACAGAACACCTACCAATCATTTGGTCAACAAAG 3887 29 100.0 37 ............................. ATTTTAAAGGCTGGTACAGTTGGGCAAGAAAATATTG 3953 29 100.0 37 ............................. TCTTCTTTTAAGATAAACAGTAAAGTAATAGTAAATA 4019 28 79.3 0 G.......C......T....-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATAGGATTTATATTAAGTACTATAGAAAAGTACAAACTGGTGAAAAATCTGTATTAGATTTATATATTAGTGAAGATGATATTATGACTGAAGAAGAGGTTCAAAAGGGTATAGATGAAGCTAAAAAGAAAAATTATCAGAATTATGTAGACCCATTAGAACAAATAAAGAAACTAAAAGAGTTATTAGACTCAGGTGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGAATTATTAGAATAGATGATATAGTAAGCACTTACAAACATGTAGATGCTCTTAAATTGATAAATTATTCTATTTTAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGGTTGTGTGATAAGTGTTATCAATTGCATTACTTATAGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTGCTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATATGATGATAATGTAAAAAGTAATAAATAGGTAAAATATGTTATAATATTTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAGCTTTTTATTGAGTATAGTAGCTGGTATTGTATCGGCTTTCATATATGATAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCCTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAAGAAACAATGCTTATTAAATTTAATAGGCATTTTTTTATTTTAATATTAAAAAAGGAAGTGAATATATGGTAAGAAAATTGTGGTGTAGTATTTAAAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 29118-27586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCW010000027.1 Clostridioides sp. ZZV14-6387 ZZV14-6387_287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 29117 29 100.0 36 ............................. ACACTTTCAGAAAAATTAAACATTATTTTGAAGTAG 29052 29 100.0 36 ............................. TCTCATCACAACAGAATAAATATAATATATAAGCAT 28987 29 100.0 36 ............................. TAGATTTAGTCATATATTTAAAAACTTCATAATAAG 28922 29 100.0 36 ............................. AAAATATAAAAGTGAAAAAAAGAAAAAATTAAAAGA 28857 29 100.0 38 ............................. GATTATATGATGGTAAACATGCTATGCAAGGTAGAGAA 28790 29 100.0 36 ............................. TACATTTACTACATTTTACAATATTACAAAAAAATA 28725 29 100.0 36 ............................. TCAAAAAACTACTTTTTTATTATAAACTTTAGACAT 28660 29 100.0 37 ............................. GAGTCATCTTTCCAATCTTCTTTATAAATAACTTTAC 28594 29 100.0 37 ............................. CAACTAATTCCATCAAATAAACTTAATACATTCATTT 28528 29 100.0 37 ............................. AAGGGTAAAAAAGTAACAAATGTACCGATAAGATTTA 28462 29 100.0 37 ............................. TTGATAAATCTTTCGCTAGCTTTCCAAAAATACACGT 28396 29 100.0 36 ............................. TTATTAGTTGTAGTTAAAGATAACGAAAAATCTTGT 28331 29 100.0 37 ............................. TAGCCAAAAACTACGAATTTGAACTAAAATACGAGGA 28265 29 100.0 36 ............................. TAAAATTTATTTAATCTTTATTAAAAATCAATCGAT 28200 29 100.0 37 ............................. ACAGTTTTATAGTTTCCAATTTCATAATCATATTTTC 28134 29 100.0 36 ............................. ATTTTCGTCTGACAATAATACGTTTCAAGAACTTTA 28069 29 100.0 36 ............................. CAAAATAAGCATAAAAATAGACCTTTCCAAAATGTT 28004 29 100.0 36 ............................. CAAAGTATATACCTCCCTCATAAAAAGACTAAGTTT 27939 29 100.0 36 ............................. TTAAAAAATCTGAATATGTAAAAGAGATAGCAGAAA 27874 29 100.0 36 ............................. AGTCTTAACATATACAAATAAAATCCTGCACAAAAC 27809 29 100.0 36 ............................. CAGATAATAAGAAAGAACTAAGTATATATAATCTAG 27744 29 100.0 36 ............................. AAATGCTTGTAATGAAGCACAAGAGATTTTATCAGT 27679 29 93.1 37 .............A.T............. TCGTTTATCATTGCTAGCCTAGCATTCGTACTGGTCA 27613 28 82.8 0 ...............T....AC.-....A | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.0 36 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TGTAAAGTATTTACGCAAGTAAAAAGCCACTCAACTCGCGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAGTTCCACAAATTTAAATAATTACTAATTGTTTAAATTATGAACTTCACTCTACTGTCAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAACTGGCATATATATTCAAAAATAATATTTTTTATAAGTAATGAAAACTAAATAGATAATATAGTAACGAATTACAAATATGTAGGTACTCTTAAATTGATAAATTATTCCATTTTATTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGAGTGTATGATAGGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTAAAAATAATCAAAAAACACTTACTCAGGTAGGTGTTTTTTGATTGAAAGAAGGTGATTATAATGTAAAAATTTTACTAATATAGTATAATAATCCTATAAATTCATTATAATAAAGGGGGATATTATGGGATTATTTAGTGGAAATGAAAGTTGTTGTATATGTGGAGAAAAAGGTAAACAAAAAATATCTGATGGTGTAATATGTTCTGAATGTTTAAAAAAATATAAAGATACATTTTCTATAGTCGAACCAACAGATGTAATTAAAAAAATATCTTCTGAGGAAATAAAAAAATCAATAAGATTAACACTTGAAAATAAAAAAAGATTTGAATCTTTTAACGCAAGTAAAAAAGTAGGAATTTATTTATTAGTAGATGAAAATAAAAAACAATTAATTATATCTGATAAAATAAGCAATTTAAATAAGAATAAGAGAGTATATGACTTTAGGGATATTATTTCATTTGAACTTTTAGAAGATGATGAATCTATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 63442-61645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCW010000010.1 Clostridioides sp. ZZV14-6387 ZZV14-6387_270, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 63441 29 100.0 36 ............................. CCTTAAAAAGAATAATAGAACACATAATCGCAATTA 63376 29 100.0 36 ............................. CCTGTACAGTGGCCTAGTTTGGCATTTCCTGGTTGG 63311 29 100.0 35 ............................. TGAAATCTCCCCCAAATCGTGCGATAATTAACTCA 63247 29 100.0 36 ............................. TAAGGTCGTTTGACTGGAAGTATAAGTTGTAATGAC 63182 29 100.0 37 ............................. TGTTGTAAGTAAAAATAAAGATGAAATAGTTAAGCTT 63116 29 100.0 37 ............................. AATAAACAATTAGAAGTGGCTCAAAAATTAGACAATC 63050 29 100.0 37 ............................. GAAATTTACATTAAATTTTTGCTTGAAAATCCTAATC 62984 29 100.0 37 ............................. TGTTTATACGAAAGAGTACAGAGGTAAATTCTACGAG 62918 29 100.0 37 ............................. AAAAGTAAAGCTGTTGGCAAAATGACAGCTAAACATA 62852 29 100.0 37 ............................. TTGGTATGATAGTAAAAAAAACTAGTGCGATTACGAA 62786 29 100.0 37 ............................. GGGTATAAGCAATAACATCTTTTTTATTATTTTTAAT 62720 29 100.0 37 ............................. AAGTCTACAACTCTTGACTTTTTCACGAATACTGGGC 62654 29 100.0 37 ............................. CTGGAAGTTGGGGCATAGAGTTTATATTAACAGTACC 62588 29 100.0 37 ............................. ATGACATTAGTTAATTCAGCGTTTGGTGATGTTACTG 62522 29 100.0 37 ............................. GATTTTGACGAGCTATGGAATGATTTAACAGAAGAAC 62456 29 100.0 37 ............................. ATGGGAGTATACTTTTTAAACGATTGTGCTGCTTCAA 62390 29 100.0 36 ............................. ACAGTTGAGCTTACTGATATAATAAAAGTAGAAAGC 62325 29 100.0 36 ............................. AAATATTATATCAAAATATATCAGATACATGGCAAA 62260 29 100.0 36 ............................. CAAGAAGTATAAGGGACATGACTAGTCACTTTAAAA 62195 29 100.0 37 ............................. TATTATGCTTATGTAACTAGCGGAGGCGCCTTATATA 62129 29 100.0 37 ............................. TATAAATTCATGTGTGTCTTTATTTTTTTCTACCCAT 62063 29 100.0 36 ............................. TGGAATTAAAATTATCGAAAGTAGAGATACAGTCAA 61998 29 100.0 36 ............................. ATCTTCCAACTAAATTTATTGTATTCATTTAAATAG 61933 29 100.0 37 ............................. TTATTATTATAAAATATACATAATTGTAAATAATAAA 61867 29 100.0 36 ............................. ATTATATAATCTAAGGGTGAAAGCAAATGAAGCTAG 61802 29 100.0 36 ............................. TAGATTGCTATTAAATTAATCCTCTTAAAAGAACCT 61737 29 100.0 36 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATT 61672 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 28 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TAATTCATTTTTTAATACTCCTTGTAATTTTAATTTGTTTTGTTTTAGTTTTTCTTCTTTTAATAAACTTATTAATTCATCAAGTGCTGATAATGTTCTCTTTGATTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTGAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAACATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATAAAAGTAAGTGATAATTTGGGAATAGACATACACCTAAAAAATGGAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGTCTCATTCAAGACACTCTTACTTAACTTATATGATGCTTCTTATTGCAGATATAGTGAGTTAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //