Array 1 695183-693854 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSH01000014.1 Listeria monocytogenes strain NRRL B-57066 PROKKA_contig000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 695182 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 695116 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 695051 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 694987 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 694921 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC TCA [694907] 694853 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 694788 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 694723 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 694657 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 694593 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 694528 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 694463 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 694398 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 694335 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 694272 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 694206 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 694143 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 694078 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 694012 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 693947 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 693883 29 93.1 0 .......................C....C | A [693858] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 432715-435395 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSH01000006.1 Listeria monocytogenes strain NRRL B-57066 PROKKA_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 432715 36 100.0 30 .................................... AGCCAAATTAAAGCGCAAACCTTTGACCCG 432781 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 432847 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 432913 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 432979 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 433045 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 433111 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 433177 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 433243 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 433309 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 433375 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 433441 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 433507 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 433573 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 433640 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 433706 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 433772 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 433838 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 433904 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 433970 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 434036 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 434102 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 434168 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 434234 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 434300 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 434366 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 434432 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 434498 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 434564 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 434630 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 434696 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 434762 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 434828 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 434894 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 434960 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 435026 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 435092 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 435159 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 435225 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 435291 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 435357 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [435382,435388,435391] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //