Array 1 50-497 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIC01000057.1 Rhodanobacter sp. PCA2 NODE_57_length_1694_cov_26.5609_ID_1667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ TCAACGGCGTGTTGGTGCACACCGATGCCGGG 110 28 100.0 32 ............................ ATTTCGCCATCCACCAGCTGGTCTGCCTGCTG 170 28 100.0 32 ............................ ATGAAGAGGTGCACACTCGGCAAGCTGGAACA 230 28 100.0 32 ............................ TCGCGAAGCTTCGGCATTACGGGATGAGCTTC 290 28 100.0 32 ............................ ATTCGGCAAGCGAAGATCACGACATTCGTAGA 350 28 100.0 32 ............................ TCCGGGCGTTGCTGTCGGATGCGGGCCTTTCC 410 28 100.0 32 ............................ GTTGACACATCGAATAACCAGAAAGTATTTTC 470 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CGCAGGCAGCTCAGAAAAGTCCGACGCCCACGCCGACAAGCGCCGAGAGG # Right flank : AAGAAGCACCTGGCCCTTGCCGCTGGTCAGCGCGTTCGCTGNNNNNNNNNNCAGGCAGCTCAGAAATGCACCGCCGCCTCGCTCAGGCCGGCCCTGGGGTTCGCTGCCGCGCAGGCAGCTCAGAAATCCCCGGATATGCCCGCGCATAACCCGTCCACGTTCGCTGCCGCGCAGGCAGCTCAGAAAACCCTGGAGGAAACGTTGCGCCCCCCGGGAGCGTTCGCTGCCGCGCAGGCAGCTCAGAAACGGCCGAACCTTTGTCCAGTTCGGCTGTCCGTGTTCGCTGCCGCGCAGGCAGCTCAGAAATTTACATATGTTTCCCACTGCCCGCTATACGGGTTCGCTGCCGCGCAGGCAGCTCAGAAAACCGAGCAAAGTCTACCGCACGATCATGCGAGGTTCGCTGCCGCGCAGGCAGCTCAGAAAAATATACGCGCACTGATAAATGCGGCACCAAGGTTCGCTGCCGCGCAGGCAGCTCAGAAATGCACCGCCGCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37375-45864 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIC01000048.1 Rhodanobacter sp. PCA2 NODE_18_length_85656_cov_57.1467_ID_3202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37375 28 100.0 32 ............................ CGTTCGCCCCCATTCCTCTGCGCGCGTACTGG 37435 28 100.0 32 ............................ TTCGACCAGTCTACGAAGTCCTCGAAGTATTC 37495 28 100.0 32 ............................ TTCACGTAAGGCGCCTCGAACACCAGCTGCTT 37555 28 100.0 32 ............................ GTGTCGCCACTTGCTCACTGCTTGACGTGACA 37615 28 100.0 32 ............................ TTGGCGGATACCCAGCGGTGAGCCTTCAGGAC 37675 28 100.0 32 ............................ AGCAACGGCTTCGTGGACGACGATATCCCGTT 37735 28 100.0 32 ............................ TGGCGCGGCATCGCGGTCGGTCGGTTGCCGGG 37795 28 100.0 32 ............................ AAACGAAAATCCGTTTGGACGGCTAAACAGGA 37855 28 100.0 32 ............................ TTAAGCCACTTCCACATCTTGATGCCATAGTG 37915 28 100.0 32 ............................ CGTATGCTCGGGTGATGAAGTGCTTTGTGCAA 37975 28 100.0 32 ............................ ATTGGTGGCGGCCGTGATATTGCTCTTTGAGC 38035 28 100.0 32 ............................ TGGATCGGGACGGACTGGGGACGTTGCGGCAC 38095 28 100.0 32 ............................ TGATCGCCCTCACCTCGCCAGCGGCGATCGCC 38155 28 100.0 32 ............................ AGATGCACGTGCGCACTTTCGCTGTCGGCTCG 38215 28 100.0 32 ............................ AGTCCGACGCCCACGCCGACAAGCGCCGAGAG 38275 28 100.0 33 ............................ CTGCTGGGCGACGGCGTATGCCTTTCGATCACT 38336 28 100.0 32 ............................ TGCGTCAGCGTGCCGGCAAGCTCATCCTTCAG 38396 28 100.0 32 ............................ AAGACCACAGCCGGTCCGCAGCACGGCAACGC 38456 28 100.0 32 ............................ ATACAGGCGACAGCTTTCGAATCGAAGTCCGC 38516 28 100.0 32 ............................ TTCGTGATCCGCTGCACCCAGTCAGCAGGCAT 38576 28 100.0 32 ............................ GGATCAGTGACCGGAGGGTTCGGCGGCGTAGT 38636 28 100.0 32 ............................ CTGCTTACGCAGCGCGGCTGTCTGCTGGTCCA 38696 28 100.0 32 ............................ AACGATTCGGTCTGTCGTGCTCACTCTCCATC 38756 28 100.0 32 ............................ TGCTCGACGCTGCCACGGCTTTCCTCGATCGC 38816 28 100.0 32 ............................ AGCAGCAAGAGCGAAGGCCGCACCCGAGTGCA 38876 28 100.0 32 ............................ AACGATGCACTGCGCCGCAGCGACTACGCGGC 38936 28 100.0 32 ............................ ATCGCCGGGGTCTCCTGCAATGCCCATCCATT 38996 28 100.0 32 ............................ TTCACGTAAGGCGCCTCGAACACCAGCTGCTT 39056 28 100.0 32 ............................ TGGCAGAAGCAGGTCGTTATCGACATCGGAGC 39116 28 100.0 32 ............................ GCGACGGGCTCGCCAGCTACCAGATGCACGTG 39176 28 100.0 32 ............................ CAGTGTGCCGGCCGCGTTGCCGGTCATCGATT 39236 28 100.0 32 ............................ TCGTAGTCGTCCTTCGTCTTCTGCGCCAGCAG 39296 28 100.0 32 ............................ CTGCGAACCCCGAGCCGAACTGCCCGAAACAC 39356 28 100.0 32 ............................ TTCAACTCTCATGGCTTCGTGTCGCACGTTGG 39416 28 100.0 32 ............................ TTCACCACCACGGTGCCGGCGCTGCCCAGGTC 39476 28 100.0 32 ............................ TCTTGCACAACGGCAAAGGTTCCAATTCTGGC 39536 28 100.0 32 ............................ ATACAGTGCGGCCAGCTTGTCCGCGTTGGCCT 39596 28 100.0 32 ............................ ATAGGGCAGCATTCCCGAATTTCTTTGATCGT 39656 28 100.0 32 ............................ CCGCAAGCACCAGCCGAGGTCTGGTCGCCACG 39716 28 100.0 32 ............................ AACGCTGCCTGGTATTTCTGCACCGCGATGAT 39776 28 100.0 32 ............................ AGAACGAGAAGCTTAAGCTGCAGCGTGATCGA 39836 28 100.0 32 ............................ AGCTTGATCGCCTGCAGCAGCGCCGGCGTGGT 39896 28 100.0 32 ............................ GGTCGTGCCGCCAGCCCACTTGAACGAGGTCG 39956 28 100.0 32 ............................ ACGTTACGGTGTGGACCCTGAAACGTTGCCGC 40016 28 100.0 32 ............................ TATCGACGATCTCTGGATGGCTCTCAGGGCGG 40076 28 100.0 32 ............................ ATGCGGACATTCGCAAGGTGGTTGGCGGGTAC 40136 28 100.0 32 ............................ AGACGAAACACAAGCGCCCGGCGAACCCCGTG 40196 28 100.0 32 ............................ AGCCATCCCGGCGGGGCGAAATGAGGAAAGCG 40256 28 100.0 32 ............................ ACCCACACGTAGCGAGCACGCACGCCATTACT 40316 28 100.0 32 ............................ CGGAGTCGTCGGTTTCGTCGTCATCGGTCTGA 40376 28 100.0 32 ............................ TCATGGCGCGACGAACATCAAGACCGCGCACA 40436 28 100.0 32 ............................ ATGGCGTGATCAGCGTACTGACTGGGGGCAAG 40496 28 100.0 32 ............................ GCCTGATGGCGCGACAGAAGAAGCTGAACGAT 40556 28 100.0 32 ............................ ATTTGACGACCCCACATCGCCAGGCTTCTGAC 40616 28 100.0 32 ............................ CGATTCTCTTTCGCGACACGACCAATCCGCCG 40676 28 100.0 32 ............................ AGCGGGAAGGTGGCGACGTCGGCATCCTCGCC 40736 28 100.0 32 ............................ GGATCAGTGCCCTTCGGACCACCGCCATTCGA 40796 28 100.0 32 ............................ GACTGGTGACGATGAAGGTCGCCATTGAGCCA 40856 28 100.0 32 ............................ ATGCCCCGCGCCCCTCGCGCCGCTGATCAGCC 40916 28 100.0 32 ............................ CGGATCAGCCGCCTACGGCGGCGCCGGGCGGG 40976 28 100.0 32 ............................ GATGATAATCGACGCCTTCAGAATCTTGGAGC 41036 28 100.0 32 ............................ ATGCAGCGGCCCCACTCGTATCGAGTGACTAC 41096 28 100.0 32 ............................ GCCAGGGCAACCGGGTGCACGGTCGTGCCATT 41156 28 100.0 32 ............................ AGTCGCCGCGCTTCATCTTGCGGCCCGGCAGC 41216 28 100.0 32 ............................ ACGCCGCTGGCCATGCCGCTGCCGTCGTACAG 41276 28 100.0 32 ............................ AGTGACGGCTGCGCCGATTGCCATGTTCGCTC 41336 28 100.0 32 ............................ ATCGAGCAGCTCATCTGCCGAAACTTCTTCTC 41396 28 100.0 33 ............................ CTGAGCGGGGCTTTGAATTTCACGGGGCGGCGA 41457 28 100.0 32 ............................ GAGTAGCGCCTTAAGAGCCCATTGTCCGACAG 41517 28 100.0 32 ............................ TGACATTTAGACGTTTAGACGTCCAAAAAGGA 41577 28 100.0 32 ............................ TTTGAGCTGTTTGCCGAATCACGCGGATGGGA 41637 28 100.0 32 ............................ AAGGAATACCGTCAACGCGAGGGCGCATCCAC 41697 28 100.0 32 ............................ CGTTTGGGTGCGGGATGTCCTGGGCGGCCATG 41757 28 100.0 32 ............................ GGTGTGGATCGGCTACGACCCGAAGGGCGACG 41817 28 100.0 32 ............................ TGCCAATCGCAAACTCCCGCCGACAACGCCCC 41877 28 100.0 32 ............................ TGATCCGGAATATGTGAATGGTAAAGCTGAAC 41937 28 100.0 32 ............................ GACCTGGCGTTCGCGTAGCGCATCGCCTTGAC 41997 28 100.0 32 ............................ TGGTCCTGGGTAAGCTCAGGGCAAGCGAGGCT 42057 28 100.0 32 ............................ TACAGTTCTGCGTGGCAGCAGTGTATTGCGGC 42117 28 100.0 32 ............................ TGCTGCGCCTGGCACGGCGGCAGGGGATACGG 42177 28 100.0 32 ............................ GGTACAGCGGCGAAGGCTCCACCGGAGTAAAC 42237 28 100.0 32 ............................ TCAGACAGTCAAAGCAGCCGCACTCGGGACAG 42297 28 100.0 32 ............................ ACATTATCGTGCGCGCCAAGATTGAGCATGGG 42357 28 100.0 32 ............................ GTAGACATCGGCGTCGATGGGCACGATGGCGA 42417 28 100.0 32 ............................ GCTCCCGACCCTTAGCCATTAACTCGCAGGCG 42477 28 100.0 32 ............................ ACAGCGCTGCCCCTACGCTTACGCGGTTTGAT 42537 28 100.0 32 ............................ GTCTGCGCGGCGGCATCGGTCGCGCGAGGCGT 42597 28 100.0 32 ............................ TTCCCGACATCGACCAGCCCTCCGCAACTGTC 42657 28 100.0 32 ............................ TTTGAGCCGAGGCTTGGTCGTGTGCGTGTTGC 42717 28 100.0 32 ............................ GTGGGGATGCCCCAGGAGTTGAGCTGCTGGGC 42777 28 100.0 32 ............................ ACGATCATGCGGCGACCGGTGTCCCCGTTGTT 42837 28 100.0 32 ............................ ACTTCACGGGATCTGCATTGATCCCCTGATCG 42897 28 100.0 32 ............................ TGTCGCGATCTGCCAAATGTAGGCAGGAGTGG 42957 28 100.0 32 ............................ TTCGCTGTCGCCAGGCGCGCGCGCCATTGCGT 43017 28 100.0 32 ............................ CGCCGGATCAGTGGGGCGACGCCTTTCTACGG 43077 28 100.0 32 ............................ ACAGGCAGCTGCCGCCGTCAGTGCAGGACAAG 43137 28 100.0 32 ............................ CAACCCGTAGAATTGCTTAAGGGCCTATTCGG 43197 28 100.0 32 ............................ AGTGGGGGTGCGCAGATATGCGTCCCCGGTAA 43257 28 100.0 32 ............................ AGCGTGACCATCTCGCCACTGGCGGTGTAACC 43317 28 100.0 32 ............................ TAATGTCAACAATTATTTTTGCCGCCCTGGCC 43377 28 100.0 32 ............................ TACACGATCCGGCGGATACGCCTTGCCCAGCA 43437 28 100.0 32 ............................ GCAACGCTCATCAGCGACCCGGACGCGATGTT 43497 28 100.0 32 ............................ ATTCAGGAGATGGGCGGCATGCGCAGCGGCAC 43557 28 100.0 32 ............................ TCCAGCGTGCCGGGTTTCCAGCAGGTGGAGGG 43617 28 100.0 32 ............................ ATTCAGATGTCGATATGTCGAATATTCCTGCA 43677 28 100.0 32 ............................ ATGCAGAGCCCACAGCGACCAGCACACCCACC 43737 28 100.0 32 ............................ ACAAGGAGATCGACTTCGGCAACGGCAAGGCC 43797 28 100.0 32 ............................ ACAATGGAGGCTCCATGAACATCCGCGCAAAC 43857 28 100.0 32 ............................ TCAACGAACCATCGGCAACCACCGAACAGGCC 43917 28 100.0 32 ............................ GTCGCGACCAGTTGCGGGAGCTGCCACAAGAT 43977 28 100.0 32 ............................ GCATTCCGGGCAGCGCGCCGCCTCCAGCATGT 44037 28 100.0 32 ............................ ACGAAAGAGCGTGGTGCAGTGGCTTGGGCCGC 44097 28 100.0 32 ............................ ATAAAATGCAACCGGCCAATCAGTCGATCCTT 44157 28 100.0 32 ............................ TATGCTTCGGCTGCCCACTCGTCCTGAAAGCA 44217 28 100.0 32 ............................ AACTCGCCGAAGTTCAGGTCTTCGGGCGGCAT 44277 28 100.0 32 ............................ TCGACAACCTCGGCGCGCTGCTGGGTGTCACC 44337 28 100.0 32 ............................ ATCGTCCAGTGCCTGATCGCTGGTCGGCCCTC 44397 28 100.0 32 ............................ AGTCAGCGTTGCGGCGGACACGGCGCGTCCAG 44457 28 100.0 31 ............................ TGAAGGATGCCGCCAAAGCCGTGCAACAACT G [44483] 44517 28 100.0 32 ............................ ACAACACATGCTGGCCGCACGCACTGGCACGT 44577 28 100.0 32 ............................ GATGTACGCATGCGCTTGATGCGCTGCGCTTC 44637 28 100.0 32 ............................ CGTCTCCGATCAGCGACCCTGCTACCGCAGTT 44697 28 100.0 32 ............................ GTGAGCTCGGTAACGATGGCATCGGACAGGTT 44757 28 100.0 32 ............................ AGCCGCATGCATCGGCGTGGGGAAGATACTTG 44817 28 100.0 32 ............................ TAAGAATAATGGCGATGTTGTGGCCCGTCGCA 44877 28 100.0 32 ............................ TTCTCGCGAATGATGTTGAGGTCCAGCAGAAA 44937 28 100.0 32 ............................ CAGTTCGCTATTTTCTCGCCAAGCGGCGCACC 44997 28 100.0 32 ............................ CATTCGTGGACGAGGTTGTCGTCCGCCAGCGC 45057 28 100.0 32 ............................ TGTCAAGCCTACGTGAGTTCGTGGAACGCCGG 45117 28 100.0 32 ............................ ATGTCGCCATACGCAACTTCACGGCCGCAGTG 45177 28 100.0 32 ............................ TCGCGGTGGAGGAACAAGATCACGTCGGCCTT 45237 28 100.0 32 ............................ AGTCCGGCCACATCGACTTGCGGCGACGCCGG 45297 28 100.0 32 ............................ CTATGTCGAGCGTCTCTCGACACAAGGGGCCA 45357 28 100.0 32 ............................ TTGCCTCGCTATTCGATTACCAGCAGACGTGG 45417 28 100.0 32 ............................ AACGCCGATAAGCGCCGAGACCGCCCAAGCGC 45477 28 100.0 32 ............................ ACTCAGAATTTTCCTGGCCGCATCCTCGCTGG 45537 28 100.0 32 ............................ TCAGCGAGCATATCCAGCGCATCCGTTATCGA 45597 28 100.0 32 ............................ TGACCGCGCACGTGAACGGCATCCCCAAGATG 45657 28 100.0 32 ............................ GCGAACAGCAACGCGATCACGTCCAATACCGC 45717 28 100.0 32 ............................ TACGCCGGCGCCGAGACGGCCAATCTGCCCGA 45777 28 96.4 32 .................A.......... TCTTCCACGCTGAGCACGGCGGGAAGCGAGCC 45837 28 85.7 0 .......C....A..A...........G | ========== ====== ====== ====== ============================ ================================= ================== 142 28 99.9 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : GCCACACTGAAGCAACTGCTCGCCACCGACTGGCTGAAAGGTATGCGCGACCACGTCCGCATCAGCGACGTTGCCGCGGCACCGGCCGATGCCCCGCATCGCGCGGTGCAGCGCAAGCAATTCAAGACCAACGCCGAACGCCTGCGGCGCCGGCGCATGCGCCGCAAGGACGAAACCGCAGAGCAAGCCCGGTCCGCCATTCCATCCAGCGTGGAACGTCGCCCCGACCTGCCCTATGTCCACATGCACAGCCGAAGCACCAGGCAGCCGTTCTGCCTGTTCATAGCCATGGGCCCACTGCAGGCCAAAGCCACACCGGGCAGCTTCAACAGCCATGGACTCGGGGGAGCGGCCACCATCCCCTGGTTCTGACCCTTTTCCCAACGACACTCACCAGACCATAGATATCAATCACCTGGAAGCCAGCCTCCCAATTGGGAGCGCTGGCTTTTTTTGCAACAATCCGTGGGCGACCAAGTACTTGGTCGTGCAGACATGTA # Right flank : GTGATCGGCGATGGGGGTTTGGCCCAGCGCTGAGCACATCCGGAATCGAGGGCGCATATACAGGTCACACGAATCTGCTAGCGTCAGCGGCCCTACCGCCATGATTGCCCTTGCATGTCCGCACGACACCCTGCACTCGCCTTACTCGTCGCCACCCTGCTCGCCGGCTGCGCCCACCAGCCGTCGCATGCGCCCGCCCTGCCCGACGGCACGCGGGCCACGGTGGCGATCCTGGAAACCACGGACCTCCACACCAACATCCTCGGTTACGACTACTACAAGCAGAAGGCCGATCCGTCGCTGGGCTTCGAGCGCACGGCCACGCTGATCGACGCGGCGCGCAAGCAGTTTCCGAACAACTTCCTGTTCGACAATGGCGACACCATCCAGGGCACGGTGCTGGCGGATTGGCAGGCGCAGGTGCAGAAACTGGCCTGCGACCAGGAGCTGGCGGTCTATCGCGCGATGGACGCGGTGGGCTACGACGGCGGCACCGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //