Array 1 1984893-1975555 **** Predicted by CRISPRDetect 2.4 *** >NC_009767.1 Roseiflexus castenholzii DSM 13941, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1984892 37 100.0 37 ..................................... TTTTTGCGCGTGTGCGTCTATTGATGATTGCGACCGA 1984818 37 100.0 36 ..................................... AAACTAGCCGCGTCCGATAGCGCGTTTGACCGCAAT 1984745 37 100.0 36 ..................................... CGCTTGCGTCGTCTCGTGACGCTTGCGCGCATATCT 1984672 37 100.0 36 ..................................... CCACTAGTGCATCAAGGCTAACCCCGCGACTATCCG 1984599 37 100.0 37 ..................................... GTCGAGCTGTATTTCATCCGGCAGCGCCGCAATCCGA 1984525 37 100.0 38 ..................................... GAGCCTCCGGAGCCCTGGGAGCAGCGCTCTGACATCAT 1984450 37 100.0 35 ..................................... CGATCCCCGCGCGACTCTTTCCAGCGCGCTGGTGC 1984378 37 100.0 37 ..................................... ATCGGTCAAGACCAGCTCGGGGTGTCTGTATGGCGAA 1984304 37 100.0 36 ..................................... ATGATTTCGATGTAACAGGTCCCGGCTCGATGGACC 1984231 37 100.0 36 ..................................... TTCGCCATCACCAGTTCCCATCCCGTACCGAGCGCC 1984158 37 100.0 39 ..................................... CGGTTGAACTTGCGGTTGTTCAGCGTGGCGGGCGACCAA 1984082 37 100.0 36 ..................................... TTCAATCCCCCCTTTCTGTGCTGTTTTCAGCATAAG 1984009 37 100.0 36 ..................................... AGACGCGACGTAGCAACGCCTAGTCAATCGACGCAC 1983936 37 100.0 35 ..................................... TTCGGCGTTGTAGGCGAGGTCAAGCCTGCGTTTCG 1983864 37 100.0 35 ..................................... CCTGATTACCCCTGGGCGGGGCGATCCGGCGGCGG 1983792 37 100.0 39 ..................................... AGGGCGAGCGCATTCGCGCCGATGACGCGCCCGCCCTCG 1983716 37 100.0 35 ..................................... TCTGTTCGCCGTTCGCCATTGTTTCCTTCCTTTCA 1983644 37 100.0 35 ..................................... GACGAGTTCGAGAGCCTGGCGATGCTGGCGTTAAA 1983572 37 100.0 36 ..................................... AGGACAATCACGATTGTCACCGGCACACGCAAGTAC 1983499 37 100.0 40 ..................................... TACAGCACCTCACCTATCAGGTCATCCAACCGTCCCGCCT 1983422 37 100.0 37 ..................................... TTCTTCGTATTGCATCCCTGTGCGCGCCTCAAAATAG 1983348 37 100.0 35 ..................................... GCATCATCATCATCGCACAAAAAACGACGGAAACG 1983276 37 100.0 36 ..................................... GGTCGGGGCGATCCGGCTGCCGGGCGGCGCGAGGGC 1983203 37 100.0 37 ..................................... GTCGAATACATGCTGCGTCCCGTCATCGTCAAAGTCC 1983129 37 100.0 35 ..................................... TACACAAAAATCGCACAAAATGGACAAAAATCGAA 1983057 37 100.0 35 ..................................... GCCCTGACGAAGACGAAGAGGCGCACGCCCAAGGA 1982985 37 100.0 37 ..................................... CAACGCCAAACGCTGCTACCCGCTCCGGGGTCGGTTG 1982911 37 100.0 32 ..................................... CCTGATACGCAAGGCGCGCCCCTCCGGGCAAT 1982842 37 100.0 37 ..................................... GGATGGTTCGGGTTCAGAGAGCTACACAAGCGCGTGG 1982768 37 100.0 37 ..................................... TTTTGCCACGAAAATGAAACGCGGATAGCCCCGGTTG 1982694 37 100.0 36 ..................................... ACCAGTGAGCGCAGCCAGTGCTCGAAGCGCCGCAAC 1982621 37 100.0 38 ..................................... GTTAACGATATCTTTTACGTTAGTTCATCGCCATCTCC 1982546 37 100.0 38 ..................................... TCGGACCGCCCGCAATGACTCCGCCAAACTCATTCTTT 1982471 37 100.0 35 ..................................... CGTAATGCCTCTGCGGGATACGCACCTCGTCTGTC 1982399 37 100.0 34 ..................................... ACGCGCTTTCCGTGCGCCGTCGCGCGCACGATAA 1982328 37 100.0 37 ..................................... AAATCTCCAAAGTCGGCTCGTCCTCGTCCCACGCCAA 1982254 37 100.0 36 ..................................... CGACGCTGGCCGCGCTCGGCGCGCCCAATGTGATCG 1982181 37 100.0 36 ..................................... ATCAACAAAGTCACGGGCGGCGCGCTCGCGGGCGCA 1982108 37 100.0 38 ..................................... TTTTCACGAGGACGGCGATCGATTGATCGCCGTCCATA 1982033 37 100.0 37 ..................................... TCGCTTTCGACGTTTTCGACGCGCCCGGTCCAGACGG 1981959 37 100.0 36 ..................................... CGTCATCGGTGTCGGCATCGACGACAACCAACGTAG 1981886 37 100.0 36 ..................................... TGGCGATTGTTTAACCGGCGCGGCGTGGTTGAGGCG 1981813 37 100.0 35 ..................................... CCGCGCCTCGCGCGCGGCGGCGATGGCGCGCCCGA 1981741 37 100.0 36 ..................................... CCTGAAACGAGGTCTCGTAGTCGACCTCGTACTCGG 1981668 37 100.0 36 ..................................... CCGTCAAGCGCCAGAAGATCGCGAGCAACGGCCGCG 1981595 37 100.0 35 ..................................... TCGCGTTCTCCAATCTAGCCCCCTAGGCTTCGACT 1981523 37 100.0 37 ..................................... TCCCACGCAGACCGCACAGCGCCGACAATGCCGACGA 1981449 37 100.0 36 ..................................... AAAGACAGCCCCGACTACAGACGCGCAGTCAGCTAT 1981376 37 100.0 36 ..................................... TCAATCGAAACGTCGATCTGGAAGCGGCCCGGGTAG 1981303 37 100.0 36 ..................................... ATTCACCCGACGATCAGCGCGTATGCGAAGCACTGA 1981230 37 100.0 36 ..................................... CGCTCATCCACATCGAGCGCGCCGCTTCCAATCGGC 1981157 37 100.0 36 ..................................... CTGTCGGAAATCGCGGATCCTGCATCGCCCGCTCCA 1981084 37 100.0 37 ..................................... GCCGCCAACTCTTTTTGCGCCTTGTACAAACCTGGCA 1981010 37 100.0 36 ..................................... TTGGAGTTGGGTTCTTCGGCTATTGAAGACAGGTAT 1980937 37 100.0 35 ..................................... AGGATGGCATTGAACTCGCACAGCACCGACATGCC 1980865 37 100.0 38 ..................................... CTCCGCGCCGTCGCCGCCGCGCTCGCTCTGGCGCAACA 1980790 37 100.0 36 ..................................... ATTTCGGAGCGCGCGTTCGGCTCCCAAAGCCACGCA 1980717 37 100.0 36 ..................................... ACGCAATCGCGTCATCGCACTCGCCGTTCCAGTACG 1980644 37 100.0 36 ..................................... TGCGCGCGGGGGGATCGCGCGCGAGCAGCCAGTAGT 1980571 37 100.0 36 ..................................... GTCGGCTGGAAGTACGCCGTCCAGCGACGTACTTCA 1980498 37 100.0 36 ..................................... CGCGGAGTGCTTAAAAACCACGCAGAGCCGCGCTCG 1980425 37 100.0 37 ..................................... GTAATACCTGTCCGCCTCCTCGTCATATTCGTCTCCG 1980351 37 100.0 37 ..................................... ATAGCCATCTGTAAAACCATATTTTCCCTGCAATAAC 1980277 37 100.0 35 ..................................... CGGTTGCTGTGGACGCGCGCTGTCTATGCTTCCGG 1980205 37 100.0 36 ..................................... CGACTCACCCAGCGCCGCCGAGAATCGCAGCACCGG 1980132 37 100.0 36 ..................................... CCATATGTCACCGCCGAAACGCATCGACAATACGAG 1980059 37 100.0 35 ..................................... AGACCGGAACCGAACCGTTGTCAATATCCAGTACG 1979987 37 100.0 36 ..................................... TCTTTCCTTGAGGATGCTCCTCATCTCTCCTCTCGG 1979914 37 100.0 36 ..................................... ATTGTTTCTCGAAGAACCAGAAGACCCATATAATCA 1979841 37 100.0 36 ..................................... CATCAAAATCAACAGCCCGTCGCTTCACGCCATCAA 1979768 37 100.0 36 ..................................... TTTGATTTCGGCATGGGGTCCATCCTCGCGCGCGCC 1979695 37 100.0 35 ..................................... CACGAGGCGCTGGCGCTTTTGGTGCGAGGCGCGGC 1979623 37 100.0 38 ..................................... GTGACGCCTGCAACCAGGATCGTCGTTCCGTTCTCCAG 1979548 37 100.0 36 ..................................... AGCGCCCGCACCGCTGCTCCCGCCTTCTGCGTTACG 1979475 37 100.0 36 ..................................... TCAGGCGTTCAACGGCGGGCGGCGGCATCTTCTCCA 1979402 37 100.0 37 ..................................... TTCGTTCTACCCGTGATCCCGCCGCTGGCGCTGCTGG 1979328 37 100.0 37 ..................................... TCCGCGAAAGCCTGCTGCGGCCGTCGCGGGCGCGTTG 1979254 37 100.0 36 ..................................... GCAACGGCGCGTGACGGTTCAGGCGCGCGGCGGCGA 1979181 37 100.0 37 ..................................... TCGACCGCACGCTGGCGACGACAATGCGCTCGATTGA 1979107 37 100.0 35 ..................................... AGCAATGTGAGAAATGCGACCTGATTGTCTTGCGT 1979035 37 100.0 36 ..................................... CGCGTCGGAACCGCGCATGTTTGAAGCGTTGCGGCA 1978962 37 100.0 36 ..................................... TTGGCGACCGCGCCGACCGGACGCCAGCGGACGGCG 1978889 37 100.0 35 ..................................... CTCCTAATCGGCAAGGTGTGGTTGAGCCACACCGG 1978817 37 100.0 39 ..................................... CGCGGTCGCTTCCGGCACCGTCGCGGATTCGGCGGTCCA 1978741 37 100.0 35 ..................................... CCATCCGCCACGCAAATACACCACCCCCGTCGCGG 1978669 37 100.0 37 ..................................... CGGCGATGGACAGCGCGGCGTCCATCGCCTCCGCCAG 1978595 37 100.0 36 ..................................... GTCATCCTCCATGACACCCATGACACCGCTCCTCAT 1978522 37 100.0 36 ..................................... CCACTGCTCAGGTCGCAGCGTCTCAAGCGAAACTGA 1978449 37 100.0 36 ..................................... TGCATCAGCGACGCAGACGGAACTTGCGTCCGCAGC 1978376 37 100.0 37 ..................................... GATGCACGCAGCGACGCCGTCCATGCGTCGAGCACCG 1978302 37 100.0 36 ..................................... TGAGCACGTGCAGACTCTCGCGCAACGACTGAGTAC 1978229 37 100.0 37 ..................................... GAAGGTCTGATGGCAGGTCTCACCGGCGCGCGTCCAG 1978155 37 100.0 35 ..................................... TGACCAGTTGACCACGCCCATACCTCCCGGAGCGC 1978083 37 100.0 36 ..................................... GCGTTCCACACGGTTGACGTCCGAGTTCGGCGTCTC 1978010 37 100.0 36 ..................................... TTCGGCGTCCCTGGGTGCCCGCCGTCGTCGTCGTCC 1977937 37 97.3 36 T.................................... GTCTTCAATTGGTTCCCCTCTCATTGGAGTTCCCCG 1977864 37 97.3 36 T.................................... GGCGTTTGCGCAAAGGCGCCGGGCGATGGTCGGATG 1977791 37 97.3 38 T.................................... CTGTGCAACTGATAACGATACTTCCGCTCACGGAACGA 1977716 37 100.0 36 ..................................... CTGGCGCTGAATCGGTCTGAATATACCAATCCCTAC 1977643 37 100.0 37 ..................................... TGCCAAACGCAGAGTTTGCCAACGCCACGATGCACGG 1977569 37 100.0 35 ..................................... CTGGGGTTTTCGGTCGACGGCGGCTGCCGTCCTGA 1977497 37 100.0 35 ..................................... TAAGACCGGGACGATGATGGATCCGCGGTATCAGG 1977425 37 100.0 37 ..................................... GCAAGCAACATTGCGCGGCGACGAATCGTCCATGTCT 1977351 37 100.0 36 ..................................... GATAAATCCTGTCTGGAAGCTGACCAGGGTAACCTG 1977278 37 100.0 36 ..................................... CGATATTCGTGATGTGAATGCGATCTTGCCGGATCG 1977205 37 100.0 36 ..................................... TCTTTTTCGGTCACTGGCGTGCTCTCTCTCGCGAAA 1977132 37 100.0 35 ..................................... CAGGCAATGGTACTAGTTCAGAATAGTACCAGGGT 1977060 37 100.0 37 ..................................... TCGCATCTGTCGCGGTTGCAGGCAATCCAGACGCAAG 1976986 37 100.0 36 ..................................... ATTCCACCGATATGGACGCATTCATCGTGGGTATAA 1976913 37 100.0 36 ..................................... CTTCTTTGACGCGCAAGGGCGGTTCATCGGCATGGA 1976840 37 100.0 35 ..................................... TCGTGATGGCGTTTCAAATGGCGCAGACGCAAACG 1976768 37 100.0 37 ..................................... GTGGACAAGTCGGAGATGGGCTGTCGCCCGATGTATG 1976694 37 100.0 38 ..................................... GAAACTCAATCAGCACGGGGTTGCTGGGTGCGGGGGTA 1976619 37 100.0 37 ..................................... CTACGGTATGGAGATACAAGCGCACAAAAAGGTTTAC 1976545 37 100.0 34 ..................................... GCGACGATTGGCGAAGATGTAATTGCGCCAGTCG 1976474 37 100.0 35 ..................................... TCATTGGTCTTACGCGTGAGCGTATTCGGCAAATC 1976402 37 100.0 37 ..................................... TTCGACGTGAATGACCGTCGCGCCATTCTTGATTGGC 1976328 37 100.0 40 ..................................... GACGCCGGTCCCTCGAATGAAGTCGTGCTCTTTGCGCGCA 1976251 37 100.0 36 ..................................... TCGTGCGAGGTTCGGCGGGCGTCGGCGTCAAACTGG 1976178 37 100.0 38 ..................................... CTATTCGCGGCGGGGGCGGCGACGCTCATACGCCGCAT 1976103 37 100.0 39 ..................................... TAAAGAACGTATTCAATGCGCTCAACAGTGCGCATCAAA 1976027 37 100.0 36 ..................................... ATAGGAGAAGATAAAGGTCGGCAATACCTGAAGTCG 1975954 37 100.0 38 ..................................... CTCGTCACGGAAAACGGCGTCGCTCGCTCGGCGACGAA 1975879 37 100.0 34 ..................................... TCCACGCACACATCCCGCGCACGGCGTAGATGGC 1975808 37 94.6 35 GA................................... ATCGAACGCGCGCGTAGTCCAGCATGCAGCAGCCG 1975736 37 94.6 35 GG................................... ACGGCGGGCTAGTCGTGCTGCCGGCGGCGCTGCCG 1975664 37 94.6 36 CG................................... CCAGCGTGCGCTGGAGGCCGTCGTGCAGCCCGTGGC 1975591 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 128 37 99.8 36 ATTTCCGAATTTTCGGCTCGCAGAAGAGCACTGAAAC # Left flank : GGTGCAGCAGCGAAACGTAGCGCGAGATTCATCTCGCGGTGCAGCAGCGAAACGTAGCGCGAGATTCATCTCGCGGTACCGCGACACCGCCAGGAGTGCAACGCAACCGCGACGTGCAACCAGGTATTTTGCCCCAACTCCCGGCAGCTCCATGCAAGTTGCCGCGCAGATCGACGACGGCGGATCGGCGACATAGAGCGGGGAGAAAGGGATCGCTGACAGGCGTTTGGAGTGATGCTTTCGCAACTCGCCAACAACATGCCTCAAACGCCGTGTTCCCGAACCGGCATGTCAAGAGTTTCTAGAGCTATTTGCCGCTTCAAGAAGGGAAGATGAACGCCTCGCAACTTGACACGGTTTTCGCACAAAAATCGAGTTGCGAAACGCGCCTGTTCATGTTATAATTTGTCCGTTGCGGCGACGCAGCAGGAAGGCTCAAGAACGATGAAACGTTGTCGTTGCGATAGATCCCCAGGGTAGAGAAGAACATCGAAGACGGG # Right flank : CTCGCGCGGGTCCTTGCGGGCGACGGGCAGGGCGGGATTTCCGAGTCGGGGATGGGCGGCGATTTCCGACAGGCGCATCCCCACCCGTCGTTCCTTCCGCCCGATGGTTTACCACCTACGGTCGCGGTCGTCGTGTGATGGTGACGGACCGAATGCGCCCGTCGTTCCTTCCATCCAATGGTTTACCACCGCGCGACGGCGGGGATCGGGACGCCGCGCCCCGCCTGCACTGCTCAACACCGTGCTATAATGTCTCCTTAGTCGGTGCAGCGGCAGGCAGGGGCGAGCAATGGATCAAATCTATGTAGCAATCGATGTCGAAACCACCGGTCTCGAGGCGGGAGTCGATGAAATTATCGAAATTGCAGCGGTCAAGTTTCGCACCGGTGAGGTGATCGAAACGTTCGACACCCTCGTGCAACCGCGTCATTCTCTGCCCCTTAATTCCAGCCGTCTGACGGGCATCACCGCTGAGATGCTTGCCGGTGCGCCGCGCTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCGAATTTTCGGCTCGCAGAAGAGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2544138-2549947 **** Predicted by CRISPRDetect 2.4 *** >NC_009767.1 Roseiflexus castenholzii DSM 13941, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================= ================== 2544138 37 100.0 41 ..................................... CGCGCCAACTGATCGCGAATATCCGCTGCGGTGCCGATTTC 2544216 37 100.0 40 ..................................... TTGCTTGCGCTGTCGGTCATCGAGAGCGCGCCGCTTGCGG 2544293 37 100.0 38 ..................................... TTATCCAGACCATCAATGCTACGACGAGCAATGTTGCC 2544368 37 100.0 38 ..................................... GTCAATCAACTGCTGCGTTATCGTTATCATCGCTCTAA 2544443 37 100.0 41 ..................................... AAAGAAACAAACGAAGAGCCGCCGAAATGGAGAGGGAGGTG 2544521 37 100.0 40 ..................................... GTGAGAATTTCCATCTCCTCCTCTGTCAGCAGCGCGCGCA 2544598 37 100.0 35 ..................................... CTCTCCATATTCGCTCCTTTGTTAATGTACCCGGC 2544670 37 100.0 43 ..................................... GTAGTAATAGTCGCCGTAGCCACCGAGTTGTCTATAGAACGAC 2544750 37 100.0 37 ..................................... CTCCTCCGATAAGAGGAATGTACAGCGAGGTGGCGGA 2544824 37 100.0 36 ..................................... GGTTCACAATCGGCTCGATCTTACCAATCTCCCTCG 2544897 37 100.0 40 ..................................... TTTCCCCCCCCCTATATTTCAGCCTCTTTGGAGGCTAGGG 2544974 37 100.0 40 ..................................... TTTCGTGCCGCTTCCGCTTGCGGCGATCACAACAGCGCGA 2545051 37 100.0 40 ..................................... GAAACGCTGCGGGCCTCAATGCCGGATTGTCCGCCCAGTG 2545128 37 100.0 37 ..................................... ACATGAACCCCATCGTCTCGATTGACAAGACCGACCG 2545202 37 100.0 36 ..................................... ACTATTCTGTCCTCTCGGACAAATGTGGTGGAAAAA 2545275 37 100.0 39 ..................................... AAGGGGACCAAGTAAATGATCCGCTATCGTGCTCAAAAC 2545351 37 100.0 40 ..................................... TCAACTCGAAAGTTGAGCGTGAACGCGATAAGAAATGCCG 2545428 37 97.3 42 ........C............................ GGGCTGTACGCGGATATCTTCCCCGATCTCTCGCCCAGAGAG 2545507 37 100.0 44 ..................................... TACCATATCGCTACGGTAATTAAAGGTGAGCGCCACCGATCTAA 2545588 37 100.0 37 ..................................... CCGCTATAAGCGCGAGATCCACCTCCTGAAACGAGGG 2545662 37 100.0 39 ..................................... AATCGAGTAAACCGTGGAATAGTCTGTTTTTAATTCGGA 2545738 37 100.0 38 ..................................... CATTTGTTGCGCTAGTCGATTGTTTCGAGAAGTTCAAT 2545813 37 100.0 45 ..................................... TCAACAGCAGCGTGGCTGTTGCTGTTAACCCAGGCTGGCGACTGT 2545895 37 100.0 40 ..................................... GGGCTTGACCTCGTCGGTCAAGCTCCAGCCTTTGGTGGCG 2545972 37 100.0 39 ..................................... TCGTGTTCTCGACGCAGGGGATCGAGGGGGTGGAACAAC 2546048 37 100.0 37 ..................................... GATAAGGTAGGTAAAATATTCCTCCTTTCCGAGGAAA 2546122 37 100.0 35 ..................................... CTCGGTTTCTGCGGTTGAGATGGCGCGGGCGGCAT 2546194 37 100.0 43 ..................................... TGGAGAAAACCACCTGCGGGTTTTCTCTAATCTGGTGGGCGAG 2546274 37 100.0 45 ..................................... CGCCCGCCGTCTGCCGCGCCTTCAGCGGGCGCGGCGCGGGAGCGG 2546356 37 100.0 39 ..................................... TTGGCGTTCGGGAGCATGATCGTCTTGGCGGAGGCATGG 2546432 37 100.0 40 ..................................... CCGGATTGACCTAAGCCTGGTCGAGTAGGAACTCCCTCAA 2546509 37 100.0 36 ..................................... ACGGACGCGCATGGCAAATTGCCAAAACGCAACCAG 2546582 37 100.0 34 ..................................... TCAAAGACCCATATAATCATTCCCCTCTGTGTCT 2546653 37 100.0 43 ..................................... TACCAGATCGGGTAAAACCGGTTCTGGTACCGAATTTCTAGTG 2546733 37 100.0 39 ..................................... CGGGCGCAAACTCGCCGCTGTGCAACTGATAACGATACT 2546809 37 100.0 40 ..................................... GTTCGCCGTCGATTTCGCTCACGCACAGGCGGGCGACGAC 2546886 37 100.0 40 ..................................... GCAAATCATCGACGAGTCTGGAAATGATGTGACATCTCTG 2546963 37 100.0 39 ..................................... TAAATACGCGATTGCGTATTACTGGAATGGGGAACTTTT 2547039 37 100.0 35 ..................................... CTTACATTCCCAGCGGTGTACGTCGAGCATTTTGG 2547111 37 100.0 39 ..................................... ATGTCGGCGTGGCGGCGCTGTACCGCACTGCGCCGGAGG 2547187 37 100.0 42 ..................................... TTTCGTCAAGACCTCCATTTCCTCCTCTGTCAGCAGCGCCCG 2547266 37 100.0 39 ..................................... TCGCCTCCCGCAAGCTCCTCCTCGAATCCCCACGAAAAC 2547342 37 100.0 41 ..................................... TTTGTTCGAGATACGGCGGATAGATACGCTGATAAGTTAAA 2547420 37 100.0 43 ..................................... GTACAAACCCCCCCACCCCGACGCCTAAAAGCAAGTTCAGTGC 2547500 37 100.0 36 ..................................... ACAACGCACCTTCATGCTCCAAGAGCATGTAATCGC 2547573 37 100.0 41 ..................................... CGTATTTGCGCCTTCGACCACAGAAACTGCTATATAAGCAG 2547651 37 100.0 37 ..................................... GAAGAACACAAAAACATATTAGAAAAATTAAAACGAG 2547725 37 100.0 39 ..................................... GGCAATGTTGATGTCCAACCAGACATAGTTTCTGGCGCT 2547801 37 100.0 36 ..................................... TTGATAAGACTGACCGTTACGCGAGCCTTCATGATT 2547874 37 100.0 39 ..................................... TCAAGTATCATTGATCACCACCTTCATAAGAGCGATGAA 2547950 37 100.0 41 ..................................... CGACATCCACGCCCGCAGGAAACGCCACCCGCGCCATCTCG 2548028 37 100.0 38 ..................................... GTTAATAAACGCGCATTGTCGACCAAGCGACTACGGCA 2548103 37 100.0 38 ..................................... CGAAGCCACTCTCGCGCAGGCGCGCGCGGCGGCGTATG 2548178 37 100.0 40 ..................................... CTCCTCGCTGTTCGGGTCACGAAGCAATCGCCGCATCTTC 2548255 37 100.0 40 ..................................... GCCAAGTTAGCCGCCGGTCTCGTATCGACCGCCCATTGTT 2548332 37 100.0 37 ..................................... TACAGCCTAATCAGGCTGTACGCGACGATCTCATAAG 2548406 37 100.0 35 ..................................... CCAAGGAAACTCACAATTGCTTAATCTTAGAAACA 2548478 37 100.0 38 ..................................... ATTGAAAATGCGCCGGCTGGCATCGTCACGGTGCTAAA 2548553 37 100.0 39 ..................................... TAAGGGTGTACGCGGCGATTTCGTAGGTAAGCCAAACAA 2548629 37 100.0 39 ..................................... AACGGCGGACATATCCGCCGAAATTGAAGAGGCGATGAA 2548705 37 100.0 36 ..................................... TTGAGCGAGTTTTTCGGTGTGAAACGCTACCTCAGG 2548778 37 100.0 41 ..................................... GTAAATTATTACTGACGCAACAAAAGCATTGTTTACAAAAA 2548856 37 100.0 40 ..................................... AGAAAACCCCCGAATGACCAACCGAACCTGCACACCGTAC 2548933 37 100.0 42 ..................................... GCGTTCTCGATGCCTTCGATGCTTTCGGGTGGTGTCTCGCTG 2549012 37 100.0 44 ..................................... TCGTCTCGCGCCGCCTCCACTGCGCGCTCCGCGTCAATAATCGC 2549093 37 100.0 36 ..................................... GTACAGGAACGCGTGTACGCTTATCCCGTGAACTCA 2549166 37 100.0 41 ..................................... CGCAACCGCCGCGCGATATGCGACGCCTCGGTCCACGTAAA 2549244 37 100.0 41 ..................................... CCCCGTGCGGGCTGCGAAATACATCGCCCGCGCTCGTTCGA 2549322 37 89.2 108 .................................GCGT ACGGGCAGGTCTGAGACCTGCCCGCGCCAGGGGATCGGGGTGGGGGCGGGTCTCAGACCCGCCCCCTACCGTGGAATTCGCTCATTGTTCACAGGTTCCGCCGTGCCG 2549467 37 86.5 185 ...............................C.GCGT ACGGGCAGGTCTGAGACCTGCCCGCGCCAGGGGATCGGGGTGGGGGCGGGTCTCAGACCCGCCCCCTACCACACACATGTGCGTATGTGGAGCAGGCGGGTCGGGCGGGGATCGGGGTGGGGGCGGGTCTCAGACCCGCCCCCTACCGTGGAATTCGCTCATTGTTCACAGGTTCCGCCGTGCCG 2549689 37 86.5 185 ...............................C.GCGT ACGGGCAGGTCTGAGACCTGCCCGCGCCAGGGGATCGGGGTGGGGGCGGGTCTCAGACCCGCCCCCTACCACACACATGTGCGTATGTGGAGCAGGCGGGTCGGGCGGGGATCGGGGTGGGGGCGGGTCTCAGCCCCGCCCCCTACCGTGGAATTTGCTCATTGTTCACAGGTTCCGCCGTGCCG 2549911 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================= ================== 72 37 99.4 44 GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC # Left flank : AGGAGCGGACTACGAACCGTTTGCTGTGCGATAAAGGAGCGCCCATGCTGTACGTAATCGCTTACGACATTCCGGACGACGCGCGACGCCTGAAACTGGCGAACGTACTCGAAGGATTCGGGCAGCGCGTGCAGCGCAGCGTCTTCGAGTGCGACCTGACCGAGCGCGAATACCGCGCACTGATAAAAAAAGTCGAGCGCGTCGTTAACCTAAACGAAGGGGACAGCGTGCGCATCTACCGATTGTGCGGCGCATGCGTAGCGAACGTCGACGTCAGAGGAGAAGGACCGCCGGTGGAAAAGAGCGTTGACATCTATATCGTCTGACGCACCGGCGCGGCGCAACGGAGGCCCGATTGCCGCGCCACCTCATCAGGATGCCATGAAAGACTGTCGAATGACACCGGTTGCGCCCAAAATGCCTGACACATTTCTCCCGAAATCGGGCGACCGCGCACACCGCCTTGTGTGTCTCGTTCTGATGCGGTATAATCATCGAGG # Right flank : CTTTTGCATCGTCCGGCAGGGTTCTTTCCAAATGAACTCGAAACATTGTCGTTCTTCAATGCTATACTATCAACGAGCGACCTCACGCGTGATCGCTCTCGCACCCGTCACATTCATGCCCCATGCGTCCAGGTTAATGACTATGAGAAGACAAGCCGTCATCCGTACTAAACCAGATCGCGCGCTCTGCGCTCGACGCGCGTTCCCGCTCATTGCCGCGCGGATGCTCACCCGTCGTCCGCACCTCGTGCATGCCCCGAAGCGATGGGCGCGCCTTGCGCAAGCGGCGGCGCACGACCCCGACAGCGCCGCGTTGGTGTTGGCGCGCGCCCATGATCGCGTATGGCGCACGCTTCCGCATGCCGTCATCGCCGATCTTGCGCGCAGCGCAGCGCGGACGCCGGAAACGGCGACGGCGGCGCTTAAGGACGCGCCGGAACCGGTCTGGCGGATGCTGTCCGTTGACGATATCCGCGCCGTAATCCAAAGCGTCGTCGGTC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 3 3186005-3185796 **** Predicted by CRISPRDetect 2.4 *** >NC_009767.1 Roseiflexus castenholzii DSM 13941, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 3186004 25 100.0 36 ......................... GAATTTGCGTCAACTATTATTGGATTGAAACATCTG 3185943 25 100.0 37 ......................... ATTCTGGCAAACTCGCGATTTCCGCATCAGGACCATA 3185881 25 100.0 36 ......................... GGTCATCTCGATAATGATGTGCGGCTCCAGTCCCTG 3185820 25 92.0 0 ........A........A....... | ========== ====== ====== ====== ========================= ===================================== ================== 4 25 98.0 37 CCCCCCGCGCGCGGGAGGGTTCAGG # Left flank : CGATGCATATTTCTGGGCAACCCATAGCGGCGCCGAACTCGATCTGCTGGTCCATCTCCGCGGCAGGCGTTATGGGTTCGAGATCAAATATGCCGATGCTCCTGGCGTCACCCGTTCGATGCGTATTGCCCTGAGCGACCTGGGTCTGGAACACCTGTGGGTCATCTATCCAGGGAGGCAGGAGTACGCCCTCACCACGCAGATCACCGTCTTGCCGCTTGATGCATTGCCTCGCATAGCATCGGCATTGCGTTAGAACGGATCGGAAAACCCGCCTTACGCGGCGCAATTGGGCAGGCAAAGGCGCCGCCTTCGCCTGCCTGATCGACCGGTTCAGATACACTCTCAGCGGCGCCATTGTCTCCGACGGCGACTGTTCGCGTTTTTCCCGGGCACACAGGCATTTTGTCTGCATCTACCCTGGATTTGTTTTAACCTCCAAGCGAACCTCGGCACTCCCACAGGGGGACGGACCCGCGCGCGCGGCGCAAGTCCCCCTG # Right flank : GCAGGGGGTGAGAGGAAAACGGTGCATCCCAGCGCCATGCACGCCCTCCATGCTCATGATGCGTGCTGTCCGCCCTTGAACCCTGGATTGACGGGGTGCGGCCAGCAGGTCGTGGCAACGCCTATCGTTTCGCAAGCGTCTCCCTCCGGTATGCCTCTTGAGTGTCGGTTCACAACCGGGTACAATACTCTGGGCTGCTTTCACGGGAAGGATCGATAGTGAACCACCGCATCCTTATTCTGTCCACCAGCGCCGGTTCGGGGCATAAAGCCGCCGCCGCCGCGCTCGAAAAGGTCTTCCGACAATCGCCGCAGGTGGCGGAACTGGTCAACCTTGACGCTCTTGAACGCACCAACGAACTGTACCGCGCTTTCTACTCCGACCTTTACCTGCGCCTGGTACAAGAACGGCCCCAACTCGTTGGCTGGTGGTATCAGGCAAGCGACGAACCGTGGAAGACCGACGCTTTCCGGTTGCTGTTCGACCGGATCAACGCCGAC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCCGCGCGCGGGAGGGTTCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 3453072-3447454 **** Predicted by CRISPRDetect 2.4 *** >NC_009767.1 Roseiflexus castenholzii DSM 13941, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3453071 37 100.0 37 ..................................... GCGAGCTGGTCAATCAAGCGGCGGCTCCGCTCCTCCC 3452997 37 100.0 41 ..................................... GCGCGCCTCAGGAACGTGTTTGAGAAGGAGCCGCGCCTCTT 3452919 37 100.0 36 ..................................... GCATGGGGCCGGCAAACCACCCGGCGACCTGTAAGG 3452846 37 100.0 37 ..................................... TCGGCGTCCCGTTCGATCCGCTCGACCGCTTCCCGCG 3452772 37 100.0 37 ..................................... CTGAGCAACCGCCGCGCCAGGTGGGCGGCGTCCCGTT 3452698 37 100.0 37 ..................................... GGGATGGGTGGGTCGCACGGATAGCCGGCCTCCCCGG 3452624 37 100.0 38 ..................................... AAAATCATCCCCATTCCACACGGCGAACTTTTCGCCGA 3452549 37 100.0 38 ..................................... GCGCCTTCCCTCTCCCATTCGGGAGAGGGAAGGAATGG 3452474 37 100.0 36 ..................................... TTGGCGGTGCCGTTCAGGCTGCAGTCGGCCGTGCCG 3452401 37 100.0 37 ..................................... GCGGCGTCGGCGTTGCCCTTCTGCGTCTCCAGCGTGG 3452327 37 100.0 38 ..................................... CCCAACTCCGCCCGCATCGCACGGATGCGGGTGGAGGC 3452252 37 100.0 39 ..................................... CGGCCTGGTGCGCCGCCCAGGCCGCCTCCGTTTCGAGCG 3452176 37 100.0 38 ..................................... ACGACGGCCACGCGGCGGTGGGAACGAAGCGCCCCCAG 3452101 37 100.0 37 ..................................... GGAGCGCCGCTTCCTCCTCGGGAGGAAGCGGAAGCGG 3452027 37 100.0 37 ..................................... TTGTTGCCGAAGACCCGGCGGAGGGCCTCCTCATCTT 3451953 37 100.0 37 ..................................... GCGAACCATCTCCTCCACCACATGCTCCCTCCTTCCC 3451879 37 100.0 37 ..................................... ACATGCTCCCTCCTTCCCCCGCCTCCGGCGGGGGGAT 3451805 37 100.0 38 ..................................... GCCGTTCCCCAGCGCTGGAGGCGCGCGCAGGCGTCCAG 3451730 37 100.0 38 ..................................... ATCACGCGTCGGCTCCGCTCCTCCCCCAGGAGCGGAGC 3451655 37 100.0 37 ..................................... CCGCGATAAACGATTCAGGCGTCACCATCTCCGCCTG 3451581 37 100.0 37 ..................................... GCGATGCCGGCGAGCAGCCGCGCAAGCGCCTCGCGCC 3451507 37 100.0 37 ..................................... TGGTCCGTATCTCCGTATCATTGATGGAGTCCCCCGC 3451433 37 100.0 35 ..................................... CGCTCCTCCCCCAGGAGCGGAGCCGCCGAGACCAG 3451361 37 100.0 38 ..................................... GTCCTTCCGGGAGACATGCCACCATCTGCATGACTCCC 3451286 37 100.0 40 ..................................... CTTCTGGCGCTTGATCTCATCGCGAAGCTGCTGAGCCTTG 3451209 37 100.0 37 ..................................... GTCCGACAGGCGAACGTCCGACTGGATGATCTGAGAC 3451135 37 100.0 37 ..................................... CTGCACGGGTCCGGGGCTACGCAGTACCGGATGATCA 3451061 37 100.0 38 ..................................... ACGATGAGCGCGTAGCCCGTCAGCTCGCGGGCGCCCGG 3450986 37 100.0 40 ..................................... AACGAGACGTTCCATCGTCTCGCCAGGAATGCGGCGAAGT 3450909 37 100.0 38 ..................................... ACGCGCCGCGCCGCCGCCCGCCCCGCCGCCGGCGCCGA 3450834 37 100.0 38 ..................................... GCGCCATGGGCAGCGCCTCGGGACGCGAAGCGCTGCAC 3450759 37 100.0 38 ..................................... CAGCGCCTTCTGCTGCACGCGCGCGGCGTGGGCGCCTC 3450684 37 100.0 38 ..................................... ACGCCAGCTCCACTTCGAGCTGGCGCACATGGCGCCGA 3450609 37 100.0 36 ..................................... CGCGCTGGTCTGCGGCCCGCTCGACCGCGGCCACCC 3450536 37 100.0 40 ..................................... GCGCGGCGCTTCCGCGCGCGGAGTTCCGCTTCCTCTTCGG 3450459 37 100.0 38 ..................................... ATCTCATGGCTTCCTCCTTCCCCCGCCTCCGGCGGGGG 3450384 37 100.0 38 ..................................... GATGCGGTGGCCGGAGCTTTAGAGAAATTCTCTCTACG 3450309 37 100.0 37 ..................................... TCCCAGTACCCCGTATCCAGGATGCCGGAGCCGGGGA 3450235 37 100.0 37 ..................................... CGGTCGGGGCCTCGCCGTTGCCCTGGGGGGCGGTGGC 3450161 37 100.0 37 ..................................... CTACGGAAGTGAGTCCATAAGATGTCAAATGCAGCCC 3450087 37 100.0 40 ..................................... GCGGCTTGGGCGTCTCGGTCGGCTTGGGCGTCTCGGTCGG 3450010 37 100.0 37 ..................................... GTCACGCTGAACCTCACATGGCCCATCGTGATCACGT 3449936 37 100.0 37 ..................................... CAGTAGACATCAAGTAGAGGACATACGGCGGCGAGGG 3449862 37 100.0 37 ..................................... ACTAAAGATACTGTCATCACCGACGCAATGGATACGG 3449788 37 100.0 39 ..................................... TCGCCCTTCTCGCCATCCTGGCCGCCGTTGCCGCCGTTC 3449712 37 100.0 37 ..................................... ATGGTGCCCTGGAAGCAGTCCAGGTCGATGGTCTTGG 3449638 37 100.0 38 ..................................... TCGAGGGTTCTTCATGAATATTACAGAGAATACAATAT 3449563 37 100.0 36 ..................................... TTTCGTCCCGAGTGGTTACACCGCACCTGACCATCA 3449490 37 100.0 39 ..................................... AGGTCTACCTCTGGGTCACCGCGTTTACCACTGCGACCC 3449414 37 100.0 36 ..................................... TTTCGTCCCGAGTGGTTACACCGCACCTGACCATCA 3449341 37 100.0 39 ..................................... AGGTCTACCTCTGGGTCACCGCGTTTACCACTGCGACCC 3449265 37 100.0 36 ..................................... GCGCCGCCTGCTCAGCCTCCGCGATCGAGATGATCC 3449192 37 100.0 40 ..................................... GGGTGCTCCTTTCAATGAAGCACGACACGCGGCGGGATCC 3449115 37 100.0 37 ..................................... GAGCTCGATGGTGCCCTGGAAGCAGTCCAGGTCGATG 3449041 37 100.0 39 ..................................... ACCGCCGGGTCGCCTCCAGGTCCTGGTGCTGCGCGCAGC 3448965 37 100.0 38 ..................................... ACCGGGGCGGCGGTGGGCTCGGCCGTGGGCTCCTCCGT 3448890 37 100.0 37 ..................................... ACTGCGATACGAGAGCAGTGCAAAGGGAAGAATAATC 3448816 37 100.0 37 ..................................... GAGCTTCTCGAGGCCGACGATGGCGGCGGCGATGATC 3448742 37 100.0 26 ..................................... ACGTCGCCGCTGCGAGCCGTACGCGC Deletion [3448680] 3448679 37 100.0 37 ..................................... CGGGTCTCCTCGAAGTCGAGGGCGAGGGCGGGACCGG 3448605 37 100.0 40 ..................................... CCAGCGTACCATCGCCGCGCGGCGGCGGTCGACCCGGCGC 3448528 37 100.0 36 ..................................... TTGTCCAGCCAGATGACCCGCTCGATCTCTGGGCGG 3448455 37 100.0 37 ..................................... ACGCCGCGCTGCCGCCAAGGGTTTGGCTCGTTCCACA 3448381 37 100.0 37 ..................................... ACCACGAACGCCACCAACCTCTGATCATGGATCCCTC 3448307 37 100.0 41 ..................................... ACGCTGCATGGCGCCACGGCGGAACCCGACCAGACGCACAG 3448229 37 100.0 38 ..................................... CTGGTCGGCGGCCTGCTCGACGCGGGCCACCCCTTCCC 3448154 37 100.0 37 ..................................... TCGACGTGCTCGGGGAGGAATTCCAGCCGAACCCGGT 3448080 37 100.0 37 ..................................... ATGCGGTTTATTTCACCCGCACCCGCGCGCCAAGGCG 3448006 37 100.0 37 ..................................... CTGAGGGTGGGTCAGCAGGAGGAAGTGGGATGCAGGC 3447932 37 100.0 38 ..................................... ACCGCGAGGTGCAACCCGACCACCATCTCGGCTGCGGT 3447857 37 100.0 37 ..................................... ACATGGCGCGGGCGCTGTGCTCCTCGGTCTGCCGGTC 3447783 37 100.0 38 ..................................... GAGCGCTGCCACGCTCGGAAGCTTGTTTTCGCGGGCTA 3447708 37 100.0 35 ..................................... GTGGCCATCGCATTCATGCGCCCCCCGTGCATCGC 3447636 37 100.0 35 ..................................... AGGTAGTCGAGGTCGACCTCGCCCGCCGGGTGTTT 3447564 37 100.0 38 ..................................... ACGGGGTGGGTGTAGGAAGGTCTACCTAGGGGCAGATC 3447489 36 89.2 0 ...............................-..CCG | ========== ====== ====== ====== ===================================== ========================================= ================== 76 37 99.9 37 AAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC # Left flank : CGGCAGCAACCAGCCGAGCAGAATCAACCGTTCGGCAACCGAACGCGGCTGCGGGTCGCGCGACATCTGGCGCAGCGGGCGAACGATGCCATAACGCAGCGCCAGTTCATTGGCGGAGATGCCGCCGCGCTGCTGGCGCAGATCGGCGAGCGCCGCACGGGTTTCGGCATCGAGCGATGCATACACGGAACGGACGACGGCAGCAGAGCAGAGTGCCGCGCGCAGGCGGCGCAGGCGTTCATCGGCAGAACAGGAACGCGGCAACGCAATACGCTGTGTGCGCGCAATCAGGCGTTGCAGTTCAGACGGAATCTCACCCAGCAGCGCAGCCCAGCGATTCATACTTGACCTCAGAGGCAATGACCTGCTATACTGTTCGTACCGTGTCATGATACCTCTCACCCGCCAAAATCACAAAACGGCGCAGGCAAGCCGGTCAGGAGCATCGAGCGTCGAGCGCGCGCAGATGCCGTGGATGGCAGGAGGAGTCGTGAGAGGGG # Right flank : CATCTAGACGAGCGGGGTGCAGCCCTGCTCCGGCCTATCTCCCGCCCCACGGAAGGGCGGGGCTGCGCCCCGCCCCAACTAGCCCCGCTCCGGCCTGGAGAGGTGATCCACCGGCTATCCGTATTTTCCTTTTCGCCACTGAATTTGCTTTTACTGGGGGCGCAAACCGTCTGCGGGATTCGGCACTGATGATGAGAGGATTAATACCAATGACCTGTGACCATCCGGCATGGTCACCCCGAGCAGCGCGAGGGGTCTTGTGCGACCCGCTCAGATTCCTCGCTGAGTTTACCCTGAGCGAAGCGAAGGGCTCGGAATGACACGCATGCGGTATCTTCAATCGTCATTGGTATTATGGCGTTGCCGTGGCGCTGCGAGGCGTCGGAGTGGTGGTGGCGACAGACGAGGGTGTCGCAGTTTCGGTTGCCGTCACCTCTGGTGTTGTCGTGACCGTTAGAGTTGGAGTAGGCGTGGTGATTGGTGTTGGTGGCGCCGTTGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 4297314-4312795 **** Predicted by CRISPRDetect 2.4 *** >NC_009767.1 Roseiflexus castenholzii DSM 13941, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4297314 36 100.0 35 .................................... AATGATTGAACCAATCCGCCGCCTGGGCCAGCCAG 4297385 36 100.0 37 .................................... ATATTTCGAATTCGACTAACCCGTACCAGTGTCCAGC 4297458 36 100.0 35 .................................... TCAACATATCTGAGACCGGGGGGGAATATTGCAGG 4297529 36 100.0 36 .................................... GCCATAGGTACTCCTCTGACCTATGACCGGCGTCAC 4297601 36 100.0 36 .................................... GGACGCAAGCGGTCTTATCCAGGCGCTTGCAGATTC 4297673 36 100.0 37 .................................... GAGCACTGGGCGGATAACCCGGCGCTGCGTCCTGCGC 4297746 36 100.0 39 .................................... TACGTGATCAGGTTGTGTGTTAATTATTACTGGATTAAC 4297821 36 100.0 36 .................................... TTCGCGACCGCGCCGACCGGACGCCAGCGCACCGCT 4297893 36 100.0 37 .................................... CGCGACGGACCGCGCGGCGCGCGGCGAACACGGCATC 4297966 36 100.0 36 .................................... TTCTCAAGGGCAACCAGTTTGTCAACCATATCGCGG 4298038 36 100.0 35 .................................... TGTCCGGGTTGACGCCTTCCTCACTGAAATGCAGG 4298109 36 100.0 36 .................................... CGGACAGCACCGCAGGCAGCAAGACGCCCAGCAGGC 4298181 36 100.0 38 .................................... CAGATCAACGAGTGGATATTGGTACTGTATATAACCGC 4298255 36 100.0 36 .................................... TTGCGCTTGGCAAGAGCCTCTACACGCACGGCGCAC 4298327 36 100.0 36 .................................... TTGCGTTCCCACAAGGTCGCCGTCGAAGACGGCGAC 4298399 36 100.0 37 .................................... GCCAGCGCCGTGTCGCCCGGCTCGGGGGTTATCGAAC 4298472 36 100.0 37 .................................... GGGGTTGGGGTTAAGAGGGGCCCACGACAGGACGCGA 4298545 36 100.0 37 .................................... CTTGATTTGCCGGGCCCGGAAAGCGGGGCGTATGCAC 4298618 36 100.0 35 .................................... CGCAGAGCACTGGGCGGACAACCCGGCGCTGAGGC 4298689 36 100.0 36 .................................... CGCGAAAGGGGGGGGGATTGGGGCAGTATGGTTAAC 4298761 36 100.0 37 .................................... TCGACGCGGAGACGGTCGAGGAGGCGGTCGAGGAGGC 4298834 36 100.0 37 .................................... ACCGCTCCCTCGCTTGCGTAGACGAACAACGTGCGCC 4298907 36 100.0 37 .................................... AACGCCGCGCCGCGCTCCTCATCAACAGCGCGCTCGC 4298980 36 100.0 37 .................................... TCAATGCTTACATCGATCTGGAACCGACCCGGATAAC 4299053 36 100.0 37 .................................... ATAGCGATGAAGGGGGGGATAACCTTCCCTTCTTTTC 4299126 36 100.0 36 .................................... CCCGTCCGCACGAGCGACATCGCGCGCGACGTGATC 4299198 36 100.0 36 .................................... CGTGGTGCCACGGCGCAGTCAACGACATGCGTCGAC 4299270 36 100.0 35 .................................... CGCTCGGCGTCGACGTGCTGCTCAATTACGCCGGC 4299341 36 100.0 36 .................................... TCGACAACACCGCGTCGCAGCAGTTCTTCCGCTACC 4299413 36 100.0 36 .................................... AAATTCGGCATCACGAACCTCCTCATCAACAAAAGA 4299485 36 100.0 36 .................................... GCGCGACTGACAGCAGCCCCATCGCCACGTTCACCG 4299557 36 100.0 37 .................................... TCCGGGTTCGTCCTTCTGGGCGCGTGGCGCGGCGCTC 4299630 36 100.0 38 .................................... CCCCGCTAGTACTTTAGTACCACACACACACCACCACC 4299704 36 100.0 36 .................................... TCCTCGCTCTACGACGGCGAGGACGGGCTGGCAGCC 4299776 36 100.0 36 .................................... ATGTGAATATGCCCGCCGATTGACCGGTAAGGATAG 4299848 36 100.0 36 .................................... CTTTTGCGGCGCGCCAGCGCACCCAGTCGCCGAACG 4299920 36 100.0 38 .................................... CGTCCAAACGTTCGTATCCTCAACCCAATCGCCGCCGC 4299994 36 100.0 37 .................................... CCAAAAGACGCCGGGCGTGTTCTACGCCCGCGCCGGC 4300067 36 100.0 35 .................................... TCCGCGGCGGCGGCGGCGATGCTCATCACGCGATG 4300138 36 100.0 39 .................................... GATGTCATAAACGAGCACGAATTTCTCGACACGCGGGTC 4300213 36 100.0 36 .................................... CGACTGCGGTCAACAGCGGCTCATCGCGCATTCGGC 4300285 36 100.0 37 .................................... ATCTGCTCATCGACCTGGGCGAGGTGACGCTGCCGCC 4300358 36 100.0 35 .................................... CCTCGTCGTTGTAAACAGAAACCGAGACCAACGTA 4300429 36 100.0 35 .................................... GTGTTCGACGCCGCGCGCGGGCTGTCGGGCTTTGA 4300500 36 100.0 37 .................................... CCTGAACCTCGCCAGGAATATCGACGCCGCCAAACTC 4300573 36 100.0 36 .................................... CAGACATGTGCAGCGTCAATGGAGTGACGCACGCAC 4300645 36 100.0 36 .................................... TGCTGCATTTGTAAAAAACGGGGAGTTTAGTCCTGA 4300717 36 100.0 36 .................................... AAAAAGGCCTCTGGGAGCCATTATAAGGCGCGAAAA 4300789 36 100.0 36 .................................... CCTTATGCTCGACATCGTAAGCGCGCCGCTGCCGAC 4300861 36 100.0 37 .................................... CAAAACCTGCAACGGCGAACAACATCGCATCCATCAC 4300934 36 100.0 37 .................................... CATCATGGATGAGTCGACGATGAGTCGCACGATAAGC 4301007 36 100.0 38 .................................... GCGTCAGCGCGGTGAGCGCAGGCAGCGCCAGGCTGCCG 4301081 36 100.0 38 .................................... GCTGGTATCGTCACGGTGCTAAACCGGCGAGGATTGGC 4301155 36 100.0 37 .................................... TGTCTACACGACAGGTACTCGGGAGTTTATCGAGGCC 4301228 36 100.0 39 .................................... GGCTCGATGTACTTGCCAGCGGGCGACGATCAAATTGGC 4301303 36 100.0 36 .................................... CTGATCTCATTCCTTGTCAGACCAACAACACTGCGT 4301375 36 100.0 36 .................................... GTCTGGACGATCGATGCGGGAATGTTAGCAAGCACG 4301447 36 100.0 36 .................................... TCGGTCTTTGTGGCGGTCAAGCGGGCGATTGGACGC 4301519 36 100.0 35 .................................... CTGTCACTGATGAGACGCTCATCAGTAACCGCAGC 4301590 36 100.0 36 .................................... GATGACATGGAACGGCGTTCGCGGTTGGAGCGCCTG 4301662 36 100.0 37 .................................... TGCGTGCATGAAGGCGTCTTGGCCTGAAGACGCTCAC 4301735 36 100.0 36 .................................... AAACTCGCGCGCGCGGGCGAGGAGGGGGTCGTCGGA 4301807 36 100.0 36 .................................... TGAAGGTATACGTAACGGTATAAACTGGTGACGGAC 4301879 36 100.0 37 .................................... GATGGAAGATCGAGGGAATCGAATTCGCGTCGCCGGC 4301952 36 100.0 38 .................................... CACGCATTCACACGCGTCCGCCTACAGGCATATACACC 4302026 36 100.0 37 .................................... TCGCGCGCGCGCGAGTACTGCTTCCACCGCCGGACCC 4302099 36 100.0 34 .................................... CGTTCGGCGCGTGATGAGTTGATTACGCGCTCAA 4302169 36 100.0 37 .................................... GCAGGGAGGGCATGAGATCGGCAAGCGCATCGTGCGC 4302242 36 100.0 35 .................................... TTCAGAGCCTTGTCCAATTCCAAGGCGACTTCCGC 4302313 36 100.0 37 .................................... GCTGGTCGAACTTTGTGGGTAGGAGGCACTAAACCGC 4302386 36 100.0 39 .................................... CACCTTTACTGAATAATACATGTTGACAAGAATGTCATC 4302461 36 100.0 36 .................................... TTGACGTGCGTGTCCGGCGTCTCACGCGACGCTGCT 4302533 36 100.0 35 .................................... TCGACCGCGCGCGCGCGGCGGTTAAGCACAAATGC 4302604 36 100.0 36 .................................... TCAGGACGGTCACCAGCGCTGGAGCATCGACGTAGC 4302676 36 100.0 36 .................................... CAGATTACACTAATGTACAATTTACATCTATCCTTC 4302748 36 100.0 37 .................................... CCATATCTCTTATATTCCTGACGTGATAATCATACCC 4302821 36 100.0 36 .................................... ACCAACGACGCCGAAGCGCCGGCGGTTATGGTGCGC 4302893 36 100.0 37 .................................... CTTATGCCTTATGAGGAGGACAAAAATGTGACTCTTC 4302966 36 100.0 37 .................................... GGCGCAATACACGGCGCCTTGGTAATTGTTGAAAAAC 4303039 36 100.0 36 .................................... TAAGTACGGTCGTCAATAGTACTTCCGGCGTGCCAA 4303111 36 100.0 38 .................................... CAAAAGTACAAAACTTCTTCTCACCGAAAAAATCGAAC 4303185 36 100.0 35 .................................... GCTGGGTGATGCGGGGCAAGCTGTTGAATCGTTGG 4303256 36 100.0 35 .................................... CCGTCGTGGTGCGGGTACAGTCCAAGCAATCCGTC 4303327 36 100.0 37 .................................... GCATTAAGCGCTCTATTTTTGCATCGAAAATAGTCGC 4303400 36 100.0 36 .................................... CTTACAGTCAATTGACAATATTACAGGCGATTGGTC 4303472 36 100.0 37 .................................... TCGGGATCGTATGCGTGGTACTACAAAGGGCCCGCGC 4303545 36 100.0 37 .................................... TCTTACCCCGCCAATAATGCAGCGCCGGACCATCCGC 4303618 36 100.0 35 .................................... TTCTAGTTTGATGATGAGCGACTGCGCGTCTTAGC 4303689 36 100.0 36 .................................... GTATATGACTTGTACAGGCGAACAGTGTACACCTCA 4303761 36 100.0 37 .................................... CCAATCGTATATATCTTATATTCCTAACGTGATAATC 4303834 36 100.0 34 .................................... CTCGCGACTTGACGCGCGACCTGATGCTCTGGGG 4303904 36 100.0 40 .................................... AGAAGTTTTGTTTTGGCGGGAAAACTGTGGTTTTACAATC 4303980 36 100.0 37 .................................... CGGCAGGAACAGCGCGCCAGCCTTCGAGCTCCGTGTA 4304053 36 100.0 35 .................................... TGCCCAAAAAAAACCGGCGACACGCTTCCATTGTG 4304124 36 100.0 37 .................................... TGGTGCAGTCTCTGGACTCCATCCAGGCGCTGCGTGG 4304197 36 100.0 35 .................................... CGATAATACGCCTGATAATACGTTGTTGCATGCGA 4304268 36 100.0 37 .................................... CTTCCGCGGTTTTGCGTACTTCCGCGTACTCCGGCGT 4304341 36 97.2 35 ..................A................. TCGGCAGATCCATGTCTTGCACGTTGACCGACCAG 4304412 36 100.0 36 .................................... CTTCCGACGCCGACGCCGGAGTACGCAGAAATTCGC 4304484 36 100.0 36 .................................... ATGTGACGGTCTGCGATATGTTTCAGGGCAACATAC 4304556 36 100.0 36 .................................... GTGCCATTCCGCACGAAGGAAGGAATACCGCTGCGA 4304628 36 100.0 36 .................................... CCGATCCGAGCGTGCTCTATTTACCGTGTTTTCGAG 4304700 36 100.0 36 .................................... ATTCTGATTTCGACGCTCTCTTGTGGCTTCAACCAC 4304772 36 100.0 35 .................................... CCTCTCACCACCATTTTCGCTATGTCGGCATCGGC 4304843 36 100.0 35 .................................... GCATTCCCTGATGGAGGACGGCATGGATTGGATAA 4304914 36 100.0 35 .................................... CGAGCGCCGACGGGCGCTGGTGGTCAGCGCGCTGC 4304985 36 100.0 36 .................................... TGAACAAAACTTTGGTCGATACCGGCCACTTTTTTC 4305057 36 100.0 35 .................................... AAAGTTCAATACCTGGAAAAACTTTACCTCGCAAA 4305128 36 100.0 37 .................................... ATTCGTAGTCCGGTTATCTGCTGGTCCTTATCGAACC 4305201 36 100.0 36 .................................... ACAATCTCGACGTAGCACAGTCGCCAACCCGGGTTA 4305273 36 100.0 36 .................................... CCCGAAGTGGTATGGACAGACCCCGACATATGCTCG 4305345 36 100.0 36 .................................... CTTGTACCCGCTGACAGTATTCCCCCCCCGTTTCAC 4305417 36 100.0 36 .................................... GTCGCTCCCTCTCCAACGCCGCCGGATTGACCTAAA 4305489 36 100.0 37 .................................... TGAAACGAATGTCGCTTTCGCCGCGAATGTCTCATCC 4305562 36 100.0 37 .................................... CCGGTCAAGCGCACCGTCAGGCAGCACCAAGCCTGAC 4305635 36 100.0 37 .................................... GCGATCCAGAGCGTTCTCCAACTCGTAAGGTTGTAAG 4305708 36 100.0 36 .................................... CGCTTTTCGCCGCGTTCAGCGCGCTGCGCACGGCGT 4305780 36 100.0 36 .................................... CGACTGTCATATGGGGATGCCGGTACATCGAGTGAC 4305852 36 100.0 40 .................................... TCGAGCATCAGCACTGGCGGGGTTGTTGGACACGGCAAGC 4305928 36 100.0 36 .................................... CCCTGCCGCCAAAACGCTTGCGCGGCAGGCTGGAAC 4306000 36 100.0 35 .................................... TTGACTATCTTGTTGCAACGTATCCTTATGGGGAA 4306071 36 100.0 38 .................................... TTTCCCTTTCGAAATTGCTCGATAGAGAAGAATCGCAC 4306145 36 100.0 39 .................................... TGCTATCGAGCATCTCTCCAGAACGTCGTCCGGTATCAC 4306220 36 100.0 35 .................................... ACAAGCGCAGGAAGTCAATCCATTGACCGCCGCCC 4306291 36 100.0 37 .................................... ATGAACTCACCCGCACCGGACACCCAATCGCGGAGCC 4306364 36 100.0 36 .................................... TCCTGAAGGAAAGAAGCATTCTGTACGACCTAGTTG 4306436 36 100.0 36 .................................... GCCGAGGGCGTCGGCGTCGAGGATTGCGCGGAGACC 4306508 36 100.0 36 .................................... ATCAGTACTGTGGCCGGTTTCCTGGCGCTAGCGCCA 4306580 36 100.0 37 .................................... TCTTCGTGGGCGACGCAAAGGCGAGCAAACTCACGCG 4306653 36 100.0 37 .................................... TGTTACACTTCATACTCGGAGACTGGCTTCCGCCACC 4306726 36 100.0 34 .................................... AGACGACAACCGCGCCGCGCAGCGCCTGGACGGA 4306796 36 100.0 35 .................................... CCATGCCTGTTGCTACTACCATTGCCCTATTAGCG 4306867 36 100.0 36 .................................... TTCGACGACCTGCGGCGGCATCTTCTCCAGCGCCTG 4306939 36 100.0 39 .................................... CCGTCGGAAGTTGCGCGAAGGGAAGTCGGCGCGATGATC 4307014 36 100.0 36 .................................... CTCGCAATCGCGCTCCACGCCGCAGACGCAGCGTTT 4307086 36 100.0 39 .................................... CCGATTGTGCGGCAGTTCCCGACGCCGCCATCGCTGCGC 4307161 36 100.0 37 .................................... TCATCAACCATCACAGACGCTCTCACCATCCGATACC 4307234 36 100.0 35 .................................... GTCGAACATGTGCCGCGTCCCGTCATCATCGAAAT 4307305 36 100.0 38 .................................... GCGACGCATGCGACGCTTGCGTGAGAAACGTGACATCC 4307379 36 100.0 37 .................................... TTCGTCAGCGCCTTCATCAACCATCACAGACGCTCTC 4307452 36 100.0 37 .................................... GCAAGCGTCGCGCACAAAACAGTTCGTAATCCGAACG 4307525 36 100.0 39 .................................... GCGCCGGTCGGGTGCTCGATATTGCCTTGTTGCGCCGAC 4307600 36 100.0 37 .................................... TTCGGCATCTGTGAGGAGGGGGCGCGAAAGGAGGCTT 4307673 36 100.0 37 .................................... CCTTCCCGGCTTCCCGGCGCCGGTTCCGGCTGCCGGT 4307746 36 100.0 36 .................................... TATTGCAATCGCATCGGTCGCGTCGTCGGCGATTGC 4307818 36 100.0 36 .................................... TCGATCAGTTTTGTCAAGACTTCTCGATATGCCGGA 4307890 36 100.0 34 .................................... TCCGTTTTTCGTCTTGTCGTCTCATGTTGTCACC 4307960 36 100.0 36 .................................... GCACATCGCGGATAAGCGCGTAGAGCGTTATATGCA 4308032 36 100.0 37 .................................... TGGGTGTTGTATGCTTGACTATGCGCGCGTTCGATGC 4308105 36 100.0 35 .................................... CCGGTCGGTCTTGTCGCGCGGCGCTGCGCATCGTA 4308176 36 100.0 35 .................................... CGCAGCGCCTGGATGTCATCCAGCGAGCGCAACAC 4308247 36 100.0 36 .................................... CTCAACCGCGCGCCGGAGATCGCTGAACAACTCCTC 4308319 36 100.0 37 .................................... TGCTCAATGCTGCTGGCGCCATTGCGAGGATGATTGC 4308392 36 100.0 36 .................................... TGAGATCGCGCGTCGGATTGGATGCTCGCATATCAC 4308464 36 100.0 36 .................................... CCGGTGTGCTATGAGCGTGATGTTCCGGGCGACGAC 4308536 36 100.0 36 .................................... ACAAACGCAGGAAGTCAATCCATTGACCACCGCCGA 4308608 36 100.0 35 .................................... CGCAGCGTGACGGCGTGGGGGGTCAGATTTACCAG 4308679 36 100.0 36 .................................... TGGTCGTCTCCGTCGCCGCTCCCGCCCTCCCCGGAC 4308751 36 100.0 39 .................................... CTACGAGTCAAATAATCGACACAATCACGCCGCGTCATC 4308826 36 100.0 37 .................................... GCGTATGACTGGCGCCTGAACGCGAGTAGTTGATTCC 4308899 36 100.0 36 .................................... TGTCCAGCCATGCCAGCCTTCTTTCCACCCAGTCTC 4308971 36 100.0 35 .................................... ATGAAGGTAAGTACGGCGGAGCGTATGGATTGACT 4309042 36 100.0 34 .................................... CGCGCTCGATAACCACGCGCGCGCGCGCGTCGTC 4309112 36 100.0 38 .................................... GTCATACTCATCAACGCTGATCCCCATCAACACGTTGC 4309186 36 100.0 36 .................................... CCTCTCGCTCACGTCGAGCGCGATACATGTCGAATC 4309258 36 100.0 37 .................................... TCGTAATTGATCGCTTCGCTCAGCATCCGATAGTGAT 4309331 36 100.0 38 .................................... GCGTAGTAACACGGTAGCAGCGTACTGTGTTCATCGTC 4309405 36 100.0 37 .................................... CTGTACGTGGTGTCAGCAACAAGACAGTGCCACTTTC 4309478 36 100.0 35 .................................... ATGTCGACAAAAATCAGCGCATCAACCTGTATTAC 4309549 36 100.0 37 .................................... TTTTCGAGCGAAACAAGCTTATCAACCATATCGCGGC 4309622 36 100.0 36 .................................... TTTTGACCGAGCAAAAAGTTTACAGAGTCAATTAAC 4309694 36 100.0 36 .................................... CCGAGAATCAGGGCGTTATTGTAATTCAATCCCGAC 4309766 36 100.0 37 .................................... ATGAACTCACCCGCACCGGACACCCAATCGCGGAGCC 4309839 36 100.0 37 .................................... CTTTACCACAAGACATAACACAAATATCCTTTGTAGC 4309912 36 100.0 39 .................................... TGTTAAACAACGTGCATTGGTTTAGAAGGACTGGTAAAC 4309987 36 100.0 35 .................................... TGTACAAACCTGGCAATCGGTGTAAACGGGTTGAA 4310058 36 100.0 37 .................................... GATTGTCTTGCGTGTCGCTCCACGAGACCTGACTCGC 4310131 36 100.0 37 .................................... TGCAGGTTTCGGGAAATTATCAGGAGGAACGGTAGCC 4310204 36 100.0 35 .................................... CGGAAGGGATGTCATCTTCTCCTTGGTCGATAGAA 4310275 36 100.0 37 .................................... ATCTCATCGCCAATCGATCGCTCTCGCCGCAAGTGGC 4310348 36 100.0 37 .................................... ACGGTTCGGGTTACAACAAGCGCCCCGGCGAGTTTGC 4310421 36 100.0 38 .................................... GGCGTTACGCGCCGCCGAGCGTTGCGCGCCGCGCACTC 4310495 36 100.0 36 .................................... CTTCAGATCGAGACGCCTCCAAAAGTTTTTTCTTTC 4310567 36 100.0 36 .................................... CAAGATTGTCGCCAATTCGCCTGTCTGCTCTGTGTG 4310639 36 100.0 38 .................................... CATGGACAACCACGCGCCAACCCCGATCGGTGGTCGTC 4310713 36 100.0 37 .................................... CCGTACTTACCTTCATTGGTGTACGGCGGCGAGATGC 4310786 36 100.0 37 .................................... TCTGTCCGAGACGGTTCACAATCGGTTCGATTTTGCC 4310859 36 100.0 36 .................................... CTAAGAGCATACGAAAAGAAGTTACTGCTATAAAGA 4310931 36 100.0 36 .................................... TGAAACTCAAGGGTGGGTCGCACCGATGTTTCCTGC 4311003 36 100.0 34 .................................... TCCCTTTTTCCTTGATCCAAACCTCGATGTCCGC 4311073 36 100.0 36 .................................... ACCCTAAGATTTTCTTCTTGTTGTTTTACGACAACA 4311145 36 100.0 37 .................................... AATACTATTTGAGCGTAGCAATGCGCATGCTTGCACC 4311218 36 100.0 36 .................................... ACGTCATGGCGCGCCGCCAAAAAGCCGCGCTAACGC 4311290 36 100.0 35 .................................... AGGTCGAGCGCGAGTTGCCTCACGTCCTCAAGTGA 4311361 36 100.0 38 .................................... TTCCGCCCGCGCTGGCGCGCCACGCGCGGGCGACGGCC 4311435 36 100.0 39 .................................... CGGTGCTGTTGTAGCGTCGTGACGGTGCGATTTTCTCGC 4311510 36 100.0 35 .................................... TTCCCGATTCGTGGTGGTCGTATGGATGGGATGAC 4311581 36 100.0 38 .................................... CGCGGGGTGCTCAAAAACCACGCAGAGCCCCGCTCGTG 4311655 36 100.0 39 .................................... CACAGGCGGCGGCGGACACAGCGATGCGTTGATGGCGCG 4311730 36 100.0 41 .................................... CTTTGTGATGCCGGTATCGGCGCGACAAATGTCTGATTACG 4311807 36 100.0 36 .................................... ACAATTATTCCTTCGGCCGAGCGTTTGCGTTCAAAG 4311879 36 100.0 38 .................................... ATTTATTGCGCGACGCGCAGACACGCGGCTTGATTGAG 4311953 36 100.0 39 .................................... CTCGTAGAGCTCGGAATGACACGCAAGGATTGCATTCAG 4312028 36 100.0 35 .................................... TATGACGGCGACCCCGGCTGGTATTGCCGTGACGG 4312099 36 100.0 37 .................................... ATCAGATCGTTGAGCCTGGGGAAGAGTACATCATAGG 4312172 36 100.0 37 .................................... ATACAGTAGATCATGCTGTCTGCTTGACTATGTGCGG 4312245 36 100.0 37 .................................... CGGCAAAACAGATCGCGCTCGCGCGCCCGCGCGCGGG 4312318 36 100.0 38 .................................... ATTTCAGAGAGGGCCATCCTTTCAATTACGTCGCCGGG 4312392 36 100.0 39 .................................... ATCAATGACCTATTCTCACCATCTTGCACCCGCGCAAGG 4312467 36 100.0 36 .................................... TGGTTGGTCGCTGGGGGTGGAGCGTCACGCCGCCGG 4312539 36 100.0 37 .................................... GTTATCAGAGCAGAAGATCGTTTCGCTCATCGATACG 4312612 36 100.0 39 .................................... TCAGGGAACGCGGGAATAAGCGCGCGACAAGCGCCAAAG 4312687 36 100.0 37 .................................... AGGTCGCAATTGGACCGCCGTCAATATGCAAAACGTG 4312760 36 88.9 0 ................................CCCC | ========== ====== ====== ====== ==================================== ========================================= ================== 214 36 99.9 37 TTTCCGATTTTTCGGCTCGCAGAAGAGCACTGAAAT # Left flank : TGCGCGAGCGTGTGTACACAACCGTTGCCACGATCCGCGAAACAGTCGATCACGAACGCATGCCTGCGCCGCCCGCCTCACGCCGACAGTGCGCCGTCTGTGAATTTCGCCGGTTCTGTAACGATGTCGTCTGAAGAGGTAAGGGGTCAGGGGTTAAGGATGAGGAGCAACACCTTTACAAGTGTAAGAATAAAAGACATTGTAACCCTGGCTCCTGACCCCCGCCTTTCAGCGACGCTCTCGCAACTCGCCGGTCACGTGTTCAAAACGCCGTCTTCTGTAATCGGCGTGTCAAGGATTTTTGCAGGCATTTTCCGCTTCAGAAAGAGAAGAATGATGCTTCGCAACTTGACGCGGTTTTCAGACAAGAATCGAGTTGCGAAACGCACCCATTCATGCTATGATGTTAGCGTTGCAACGACGCAGCAGGAAGGCTCAGGAGCGTCGAAGATCTATCACTACGACAATCCACACGCACGAGAGAGGTGATGGAAGTGGGC # Right flank : CCCTAATCTCCCGCACGCGGGGGGGTAAGGGGGGTAAGGGGGGCAACTTGCCGAGGTCGGGCGCAGAATGCGCATGGCACGAGCGGCGGTTCGGCGCTGCACCGGGTAAGGGGGGCAACTTGCCGAGGTCGGGCGCAGAATGAGGGAGATTGCGAAGGAGCAACCCCCCGCACGCGGGGGGAAGGGTTGTCAAAACGGGTAATCCTCCTCGTTCTCCTCGGCAACCCCCCATACACGGGGGAAAGGAGGCTCACCGGCGAGACATATACCGGCGGCAGCGGGCAACCCCCGCACGCGGGGAAAGGGATAATGCAGGCTCACAACACAAGGAGACCGGTTGGCAACCTTTACGGCGCGAATGTAATCTCGATAATCCTGCATAAATGCAGGCTCACGACACAAGGAGACCGGTTGGCCCCCCACACGCAGGAGAAGGGGCGATTTCCGATTGTTTGGCTCGCAGAAGCACCCGCGCGGGCGTTCACGACCACACTCAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGATTTTTCGGCTCGCAGAAGAGCACTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //