Array 1 25043-30314 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOD01000062.1 Brevibacillus agri strain NBRC 15538 sequence062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25043 32 100.0 35 ................................ CCCGTCCGCCCGTAAAAACAAGAGGTTGGACGTGT 25110 32 100.0 32 ................................ ACGCCAAGATAGCGTTTGACATACTGGTCAAC 25174 32 100.0 33 ................................ GGGTGTGTTCGTGTTGATTTTAACCTTATAAGG 25239 32 100.0 36 ................................ TATACGGGATGTCCTCGATCAATTCTTCGTTGACAC 25307 32 100.0 36 ................................ GTCTTTGCGTCAAAACAAAAACACCTCCGTGACCAC 25375 32 100.0 34 ................................ CGCCAGCAGTTGCTTCGCGCGCTGCTCGACTTGG 25441 32 100.0 34 ................................ ATCGTTGATTAGCTGCACGTTCACTGTCCCGCCA 25507 32 100.0 36 ................................ AGATGCAGACCCCTCAACCGGCAGCGTGTTTCCTTC 25575 32 100.0 33 ................................ TCAATCGTTGTCCGTCGCGGTGCGTAATCGCGA 25640 32 100.0 34 ................................ CGCGACCAACACGTCATCCGCTTCGAGTTCGAGC 25706 32 100.0 35 ................................ TTGCGCAGTCAACACGCGCTCCCCTTTGTGCAGTC 25773 32 100.0 35 ................................ AACGAAGGTGCCGAGGGCGTACGGAAGTTCCAGCG 25840 32 100.0 34 ................................ TCTTGACGATTAACGTTTAAACGTAAAGGACGGT 25906 32 100.0 33 ................................ GACCCGATTGTCCAGTTGGTGCAGGGCGTGTCG 25971 32 100.0 34 ................................ GACGCGAGTCATTAGCGGGCACACCGGGCAGGTC 26037 32 100.0 35 ................................ CTCGACATACCGGCAGAGAAGCACGGGAACAAGTG 26104 32 100.0 35 ................................ ACTTTCGAGGGATACGAAATCCTCGACCGAATTGC 26171 32 100.0 35 ................................ GCGAATAACGGACTCAAAGGGTCTGACGCAGGTAC 26238 32 100.0 34 ................................ CTTAGACTCGATTATGTTACGACGGATTTTTGCA 26304 32 100.0 36 ................................ TCCACTGTCTCTACTATCGTAAAAAAAAGACTCTCA 26372 32 100.0 35 ................................ ATTTCGCTCACTCCTTTGTTTTGTTGACTTTATAA 26439 32 100.0 35 ................................ AATGTTAGCTGGGGTAATTGTGCTGGCGGCGGGGA 26506 32 100.0 35 ................................ CGCCTGACCAGGCGGCGTCGCCCTTGCAAAAGCTG 26573 32 100.0 35 ................................ TATACTTAACCGTTTGTGGCGGGAGTCTTGAGGGG 26640 32 100.0 34 ................................ GACAGGCATTGTCTAATTTTGTCGAATTGGCTTT 26706 32 100.0 35 ................................ CCGGATAGCCCGTTTCGCACCGCCCCTACGGCGCC 26773 32 100.0 36 ................................ CCTACAACGTGACTTAGTAAGTAAAACTGCAAAAGG 26841 32 100.0 35 ................................ ATTAGGCACGTGATGCGATCCCCCTATAACCATTT 26908 32 100.0 34 ................................ AAAAATAAAAAGCCCGCGCTTGGCGGACTTTTTG 26974 32 100.0 35 ................................ ACGCGGCGGCTGGACGAGATGTTTGGTTGCTGCGC 27041 32 100.0 36 ................................ CCCGTCCGCCCGTAAGAACAAGAGGTTGGACGTGTA 27109 32 100.0 35 ................................ CCCGACCCCCGGCGGCAGCCTGTGGCTGCCGCAAC 27176 32 100.0 37 ................................ CTCCCCGCCGCCGCCAGCAGCACAATTACCCCAACTA 27245 32 100.0 34 ................................ CCGATGTGGTAGTTCTCCCAAAGACAAAAATAGC 27311 32 100.0 33 ................................ GCCATTGCAAAAACTTTGGAATAAGTTTTTTAC 27376 32 100.0 35 ................................ TCCCCTTTATAAAAATAAAAAGCCCGCGCTTGGCG 27443 32 100.0 33 ................................ ATAGACTCGGACTTGTAGCCTGCTTTGAGGCGA 27508 32 100.0 33 ................................ TGACCAGCCCGTCGAAGGGTACTTCTGCACATT 27573 32 100.0 35 ................................ AGATTCCCACTCAATACCTACTCCGTAGATGTGAC 27640 32 100.0 34 ................................ ACCGGAGTTTACGGCTACGATGGAGTACCAACTA 27706 32 100.0 34 ................................ ACCTTTTCAAAAGAGGACGACGCACTAATCATGA 27772 32 100.0 34 ................................ TACGGCTGCAGCAACCATCCGAATTGTGATTTTA 27838 32 100.0 35 ................................ AGAGACAATCGGCGCTCCATCTGCATCGTATCGGC 27905 32 100.0 34 ................................ ACCGGAGAGAACCTGGGGATGGCCGGGAAAACCA 27971 32 100.0 36 ................................ ATTTGGGTGAGGAGGAAAAAGGTGATGAGTTAGATG 28039 32 100.0 33 ................................ GCATGAGGGCGGCAGCTCGCGCTCGATCCGCGC 28104 32 100.0 35 ................................ AACGACTGGTACGAGAGTGGAGGTAAGGACATGAT 28171 32 100.0 34 ................................ TATAATTATGTTTTTTAAAGGCTTATTTGTTGCT 28237 32 100.0 35 ................................ CATGTCTCGTAAGCATGCTGCTTGATCTCGTCGCT 28304 32 100.0 36 ................................ CTCCTGATAATGGTCGGGCAGCGGTCGAAGGGCCTC 28372 32 100.0 36 ................................ CGTCAAATCCGCGCACAACCGTAATGACGTCGCCGT 28440 32 100.0 34 ................................ GCCGACCATCCGCTTGATCGCGCCCTGCTCCATC 28506 32 100.0 33 ................................ CGGGAGCTGGCGGAGGAGTTGGCGCCGTTTACC 28571 32 100.0 35 ................................ GATCGGTGTTTACCGGGTAAAGGCGATCCTTCGCA 28638 32 100.0 35 ................................ TGAAAAACTCCATGGTTAGAGCCTCCCTTTGATTA 28705 32 100.0 35 ................................ GCGGATACGGCAACGACACAGAGAGCACGACAAGC 28772 32 100.0 33 ................................ CCTCTTTGCCATGTAACCTCATCCCCCTTTATA 28837 32 100.0 36 ................................ GCACTGTGTCTTTGTTTATTGGAGATGGCGGCAAGA 28905 32 100.0 35 ................................ CCGGAAGAGACGCTGGAGATCATGGAGCAGATTGA 28972 32 100.0 34 ................................ CATAGCCATTGCCGAGGGAGAGCGATGGTTGGGC 29038 32 100.0 33 ................................ CCCCAGCAAGTTAAAATTCGCGTCGATTATTCG 29103 32 100.0 34 ................................ TCCGGGGACAATCAAACAACTGTTCAACTTTTCC 29169 32 100.0 35 ................................ ATCGAAACTGTAGGGCATCGCTCGCTCATCTTGTG 29236 32 100.0 35 ................................ CAATATGGTTGCCAGCTTGGCGGATGGCGCAAAAA 29303 32 100.0 35 ................................ AACCGTCGTTTCTTCGAGCTGGCAAGCACGAGCGA 29370 32 100.0 35 ................................ TAAAATACTCGGCGAACTCGTCCGCCGTGTAAAAA 29437 32 100.0 35 ................................ ACTCGGCGTCAGAGCCTGTGGGCTGTTAAACGTGT 29504 32 100.0 34 ................................ TACCAGTTTTACACCGGCGAGATCGTGAACGGTA 29570 32 100.0 35 ................................ TGTAGGCGATATGAAGAAGTGAATGGTGAACTAGC 29637 32 100.0 36 ................................ TGTTTTTCGGACTGTTTCTTTGTTTATTGGTGATGG 29705 32 100.0 34 ................................ ACATAACCGTGATCGCGATAAGTTCCGCACCCAC 29771 32 100.0 33 ................................ AAATTGCGCCTGGTAAACTGGTGCAATAACGCC 29836 32 100.0 17 ................................ TGCTCCAAGTACGCAAA Deletion [29885] 29885 32 100.0 35 ................................ CTGATCGTTCGACGTTCACGGGATACCGCAATTAC 29952 32 100.0 35 ................................ TTTTGAGGTTTTTGTGTGTACTGGTGATAGTAAAA 30019 32 100.0 34 ................................ AGGTAAAACGCCCCGTCGTCGTGTGGAACCTCCA 30085 32 100.0 36 ................................ CATCTGCTGCATCAATCGTTTTATGTGCTCGATGTA 30153 32 100.0 35 ................................ TTATCGATCTGTGGGGGGATCATCTTGAAGTTGGC 30220 32 100.0 33 ................................ TGCGGGGCGACGGGAAACAAAGGTCCAGACGGA 30285 30 90.6 0 .............................G-- | ========== ====== ====== ====== ================================ ===================================== ================== 80 32 99.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCTTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTTTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : | # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4751-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOD01000049.1 Brevibacillus agri strain NBRC 15538 sequence049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 4750 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [4733] 4683 36 94.4 41 .......C.A.......................... TTCTTAACACGCGACGACTCTTTCCCCACACGATTTCGATG 4606 36 100.0 38 .................................... TCGATGTTCGCGATCCATTGGCGATTAAACAGGCTGGA 4532 36 100.0 38 .................................... ATGTGAAAGATTGGAACATGCTTGCACAAAAGGCGCAT 4458 36 100.0 37 .................................... AGATAATAAATGCCAATTGTAACGATACCGAGTAACC 4385 36 100.0 40 .................................... CAACACAACAATCATGGTTCGGGAATGCCTCAGCTTTTAG 4309 36 100.0 38 .................................... AACTATAACATAACCCAAGCAACCGCTTATAGTTTCTG 4235 36 100.0 40 .................................... ACCAGCGCCTTGTCTGCCATGTATTGCTGTGCCAAAGCCA 4159 36 100.0 35 .................................... TAACCGTAAGCCTGTAACGAAGCGTTCGCTCCAAC 4088 36 100.0 35 .................................... TGGGACGGTGCACAGCAGACCGTAAAAGATGCGTT 4017 36 100.0 36 .................................... ATCTAGTCACCCCAAGGATAATTGTCGTCGTAGTCC 3945 36 100.0 38 .................................... CTCTAGCTTGCTGTCGAAGTTAGCCCTACTGTTGATGA 3871 36 100.0 38 .................................... ATCTGCATCACGGGTAGCAACGCCCGCAGTCAGGTCTT 3797 36 100.0 36 .................................... GAGGATCGTGTCTGTCAACGGGTATTGCACGCTTCC 3725 36 100.0 36 .................................... TATGAGGTTGTCAATGTCGAAAAAGTGCAATACAAT 3653 36 100.0 37 .................................... AGGAAATAAATATGCAGAAATTGAAGATTCGCAAAAT 3580 36 100.0 38 .................................... GGTGAATTGTTGCCAACATTGATTGAAAAAATTGATGA 3506 36 100.0 35 .................................... AAATGATAGTCAGTAAAGTCAGTATAGACCCATTT 3435 36 100.0 36 .................................... GCGAAACGACTTCTTTTTCTACATGCGCTGCCCGAT 3363 36 100.0 36 .................................... GAGTCCAACAACAAACGAATGGGATCGTATTATTGT 3291 36 100.0 34 .................................... AATACTGTTACTGGCAAAACAATGAGTTGCTTGT 3221 36 100.0 40 .................................... CTGAATTTCATCGTGAATGTTTGCAATCATTCTTGTTTTA 3145 36 100.0 37 .................................... ATTCAGCTTATGAGGAAAAAGGGGCTTTCCATCGGCG 3072 36 100.0 39 .................................... GATCAACTCCTTTACTTCCGAATTTTAAAGCGAAAAAAC 2997 36 100.0 34 .................................... CGCTAATGGACGAGTACGCCCGCGCCATCCACTC 2927 36 100.0 36 .................................... TTCCCTATGGACATTCAATATTTCGCGGAAGATTCC 2855 36 100.0 38 .................................... GAAACATGATCCAGTGGCATAAGAGTGGGCCGCGACAG 2781 36 100.0 35 .................................... CTAACGGTCAGCTTCTCACCCTCCCCCATTGGGAC 2710 36 100.0 39 .................................... CTGCGTCTATATCTCGCATCGTGTGTACGGCCTCTTTCC 2635 36 100.0 36 .................................... TTTGCCGCTATCGGAGGATGATTTGCGATATGTCGG 2563 36 100.0 44 .................................... GACTTTACTTGCACAAACGATAGCAGTCGCTTTGTTTTGGTGGG 2483 36 100.0 35 .................................... TTAGAATTTCGTAATAGCTGTCCTGCTTATTCCCG 2412 36 100.0 36 .................................... GGTAAAGTAATGTTTCTGATCGACTTTTCCGGCTTC 2340 36 100.0 37 .................................... GCGGATGTAACCGAGCAGCAGCGACTGGAGCAGCAGC 2267 36 100.0 36 .................................... ACAACTCATCGTGATCGCCCGTCGGCATGAATATCG 2195 36 100.0 38 .................................... CTGATAACCAGTATTTTTATGATCGCTGGAAAGAGTTG 2121 36 100.0 34 .................................... CCTGCCTGTCGCTCTAGCATTTCCTGCTCTAAAG 2051 36 100.0 39 .................................... CAGGAAACAGATGGAGCGCCGACTAGCTCATAAAAATGA 1976 36 100.0 36 .................................... AAAGAGGCTTCAAACCCTAGAAGCATTCCATTTTGC 1904 36 100.0 35 .................................... TTGTTGAATTCGTAGAACTCTTCGATAGCACGCAC 1833 36 100.0 38 .................................... TACTTTTTTTAGGTATAAAAGACCAAAACGTTCGACAT 1759 36 100.0 35 .................................... GATGCCTTCCACTCATCAACACGCGCCTGCAAATA 1688 36 100.0 34 .................................... GAAAAAAGAGAGAGAACACAACGGAAATCAGAAG 1618 36 100.0 41 .................................... CCGTACTGGAAGCGTTCAGCGATCATGCGAAAACGGTACTT 1541 36 100.0 38 .................................... CTCTTCTCTGAAAAACATTATGGCACTCGTCGGACAAG 1467 36 100.0 37 .................................... ATCCAACGACGGAACTTCCCGCGCGATCAACGTCCAA 1394 36 100.0 40 .................................... ACGGAGCTTTGGGAGCAAGAACGGGTGTTTGATTGCGATG 1318 36 100.0 37 .................................... GAGCCGCAAGACCTGCGACACCGAGCGCAGCACCCAC 1245 36 100.0 35 .................................... TCAGCAAGCCAACTGGCAGGACGAAGTGGCGAAGG 1174 36 100.0 39 .................................... AATGGTTTTGCGGTCGATAATTTCTTTCCCCGTGCGCTT 1099 36 100.0 39 .................................... CGACCATTACGAGAACTGACATCCAACCGTTGCTGGATC 1024 36 100.0 39 .................................... CAGGATACCGTCCTTGTTCAACTCATCAAAAAATGACGA 949 36 100.0 38 .................................... CCTACACCAGTGAACACCACGGCACGATAACGTACAGA 875 36 100.0 34 .................................... CGCAGATGACGCGGTTGATCTCCGCCATTTCGTC 805 36 100.0 42 .................................... CAGTTACCGTTTCCCCAACGTTATACCTGGTCTTGTCTGTAG 727 36 100.0 36 .................................... TGAGGTTGTTATACCTGATGCTGGTGCTGGTACTGC 655 36 100.0 39 .................................... GATGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 580 36 100.0 35 .................................... TCAGGAACCTTTTGCGCTCACGATCAAAATGTTCC 509 36 100.0 39 .................................... GGCTGAGTTAATGGCGCGTTTGGCTTATTTGGAGTCTGA 434 36 100.0 36 .................................... TCAGCTCATCCAGGTTCACGTTCAACAGGTGCTTGT 362 36 100.0 39 .................................... TTACTTACAAACTCCATTCTTTGTCATCTCCTTTTAATA 287 36 100.0 36 .................................... TGTGACTTGCGTAGTGTCCACCGTCGGGTCAGCCGC 215 36 100.0 38 .................................... TGAAGATGGCTGTGATCGCCTTAACGAAAAAGATCTTG 141 36 100.0 34 .................................... GATCTCATCTGTAAAGTCTATTTGGCATCGATCT 71 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 65 36 99.5 37 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TCGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGATTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : CTCTAGGGCTTGAGAATTTATTTTTGATACTATTGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 13487-10973 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOD01000049.1 Brevibacillus agri strain NBRC 15538 sequence049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 13486 36 100.0 40 .................................... TAGAACCTGATAAAGAGTATGTATATCGTTTTGTTGCTGA 13410 36 100.0 37 .................................... ATTGACCACTCCGGCGTTCGCCGACTCCGGGGGAATG 13337 36 100.0 37 .................................... ACGTACCGGCGTCCGAACCCTTCAATCCGTTGTTCGC 13264 36 100.0 37 .................................... AGTGCCGATTTTTGATGACGTAACGAAGTTGAATAGA 13191 36 100.0 40 .................................... CTGCCTGCCCGAAAACGAAATGGGCTACCATGTCGGGGCC 13115 36 100.0 38 .................................... CAGGGTATCCGGGAGACGAATTCGACTATAAGAGTGAG 13041 36 100.0 35 .................................... GTCCAAGCACGTACTGACGGTGACCAAGCTATTCG 12970 36 100.0 35 .................................... GCCGCCTTGCGGGAGTACATGAACACCATCATTAA 12899 36 100.0 36 .................................... TTCGCTCCTTCGTTGATTTCTTGTCTTTATTATACT 12827 36 100.0 37 .................................... AACACCTCACCCGTTGCGCTACTTGTCCGGTCACTTA 12754 36 100.0 34 .................................... GTGCGGGTGATCTTATTGCCCGTATCGACTTCGA 12684 36 100.0 36 .................................... CGAATTGGATGAGTATGCAATGGCTGAAGCCGACAG 12612 36 100.0 35 .................................... GCTGCCGGAAGAAGAATAGGAGGGATTGTATCATG 12541 36 100.0 35 .................................... ACCTGAAGGGTAAGAACATGAAGTGGCATTTACTG 12470 36 100.0 35 .................................... GTAAACACCAATGGAAGGCAACAATCGTTTGTTAA 12399 36 100.0 34 .................................... GGAGCAGCGGAAGCAATTCGACTCTCTCTATCCG 12329 36 100.0 40 .................................... GGCCTATGTTGGAGTCCTTTGTTACGGTATTACTTGGTGA 12253 36 100.0 37 .................................... GGAGGGAGATTAGATGCCAAACGAGTTCAACGAGCAG 12180 36 100.0 37 .................................... CGAGCGGCAGCAGGCGCAGCCGCAGGGCGAGAAGCCC 12107 36 100.0 37 .................................... TCTGCCGCGAGCTGGCCGAGCGCGAACAGGGTTGCGA 12034 36 100.0 38 .................................... GTCGATTCGTCCCGTGTTTTTGCTTTTGACCAGTTTCA 11960 36 100.0 36 .................................... TCTATGTTATTCTATGGGTGTCGAAAGGACGCTATC 11888 36 100.0 34 .................................... GACCACGGCCTTGTTAGCTTGGTGCGAGCGCGAT 11818 36 100.0 39 .................................... AAGAGACAGGATGATTGCCACATCAAAAGCCAGTATCAA 11743 36 100.0 34 .................................... GACTTGGCTATCGACGACTTTGGACGTATCGACC 11673 36 100.0 37 .................................... GAATGAGTAGCATGGGACAGTTTTTTATCGACCTTTT 11600 36 100.0 37 .................................... TGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 11527 36 100.0 40 .................................... ACGTTACTTAAATGCTTTACTTTTGGTTGCTACTATCGTA 11451 36 100.0 38 .................................... AGCGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 11377 36 100.0 38 .................................... GTGATATGATTATGTGTTTAAAATGCTTCCCGTAAAGC 11303 36 100.0 39 .................................... TTCGTATAAATACATGTTACAATGTCTAAGAAATATTCA 11228 36 100.0 40 .................................... GCGCACGTTGCGGCGCTGCATGACGGTGGTCGAACCGTCC 11152 36 100.0 34 .................................... GGACAAGGCGAAACGGTCGATATGGCATCCTTCC 11082 36 100.0 38 .................................... CGAACGAGCAGGAGACGACGATTCGTGCATCGTCACCG 11008 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 35 36 100.0 37 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGAAAAAAAGCTTTTCGACTTTTTTTGTTGGACACGTGGCAATTGTAGGACCGGACTACGATATCATTCACGTTCATCCAAAAGGACCTTGGTTCGTTGAAGATATCGATTACTATGTATCTCGATTTAGGGACGGCGATAAGATCGAAGTTCTCCGTCCCAGGAGTGGAGCTTCTAAAGCTGCTAAATGGGCAATCAACCATATTGATGACGTAAAGAAATACTACTTCAATATGGATTTGGATAATATTGAGCTTAGTTATTGTTCTAAGTTCATCTGGCAAGCATTTTACTATGGTTATAATCTCGATATTACCGGCATGGGTCTTACCGATCGCAGTAGAGCAACCCATATTTATCCAAATGATGTTCGAGATTCCGATCACCTTGCATCAACAGAAACCATCGACGTTGAGAAGTAAGAAGCTGAAACCTCGCATTAGCGAGGTTTTTTATTTGAGCGCCGATTTAAGATCTCAGTAGTTTAGACGGACTTTAGC # Right flank : TCCTTCCCACTCAACCCCTACAGCCGCAAGCCTTACAGACCCGTTTTTCGAGCAAGCCAAAATTCAATCGCCATTCCTCTTATCCATCGGCTGCCTCTTCCCCTAAAAAACTCTGGAAAGCCTACGCCCACAAAGAGTTCGAGCATCCCCCGGCTTTTTTGACCTGAGAGGATGCTCGCATCATAAAATTCGAAAGCTTAGTGGAAAGTCGTGATTATCCGTGGGAATAGACCTGTGGATGGGCCCATAATGCACACGCACGGATATGTAAGTCGACTTATGGCCTATAGCGTGCGACTGACACCTTTATTTTACTCTTTTTCCACTTTTGTTACAACTAGCTTTCTTCATTCCTTAATAGATAAATTTGGTCAAATCGCGAGGCAGAAACTCCCTGCCAACAGTAGAAATCCGCTTGTCCAGTTGATCTCTCGTCACTGGGCCGATTTTTACAAACATGACCTGGTCTTCTCCATGGTGAACCAGCTCCGCCAGGCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //