Array 1 2207-2612 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLW01000222.1 Myxococcus sp. AB025B NODE_222_length_17057_cov_39.0193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2207 36 94.4 35 ...T.......................A........ TTCGGCTCCGACGACGGCTTCGGCTCCGGCGACGG G [2208] 2279 36 100.0 36 .................................... CATCATCACCGCCGCGAAGGACGCGGGCGAGATTGG 2351 36 100.0 35 .................................... GCTAAGTGGACAACCCTTCGCGACGACTTCAACCG 2422 36 100.0 43 .................................... CGGAGAAGGTTGCGGAGTACAAGACCAACCTGCGCCGCTGGAG 2501 36 94.4 40 ...................G......A......... GCTTCGACCCCTCGGTCTACGGCATCATGAGGGAGATGAT 2577 36 94.4 0 ...............................GG... | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 97.2 38 GTGCTCAACGCCTTCCGGCATCACGGCGAGCAACGG # Left flank : GCGCCGGAGGTCGTGTAGTTGCGGAACGTCCCACCCGCCTTGGCGTGGAGGGCGGTCTGAATCTCCCCCGAGAGCGCGAAGATGGAGTCGCCCAGGAACACGACGTTGTTGTTGTTCGCGTTGGTGATCCACGGGGCGCTCATGAGCTGACCGAGGCCGCAGCCGACCAGCAGCATGGGCGTCGTGACGACGAGGGCTTGTGCCCACCGGGGCAGACGCGCACGACCAGAGACTTGGAACGCCTTCATATGGTTCCTTCCCGTCAGCAGGGCTCACCCGCCGACGTGCCGTTTGGGGATACGTCCGTGATTGCTCCGTCCTCCGGACTTTCCGGATGACGTCCGATTCGCGCACAGGATTGATTCGGAAGTCAAAGCTGAAAATTGCCAATAAGCCGCAAGGACGACCCTGCGATAAATTTCCAGAACTGTTGGGCTGGACCTGTTCGCAGCGTGAAACATGTATCCGTGTGACAGGGCCGCGAGTGGAGCCACGAGTCC # Right flank : GGAAAATCGTCGCGGCGGTCAACAGCATCACTACTTGCGGCGGACGCCTTCCCCTGGAGAGCGCTCGGCGCCCGCTCCGCTGCGGGAGGCCCATTCGCTGGGTTCTGGTCGTGGCCCGGCCTCGTCGCGGAGGATGGAGACCTTTCCCGCTGGGGGCTGGATGAGGATGCATCGCGCTGCCGCGCTGCTGCTGGTTTGGCTGACGGGCTGTGCTTCGGGGCGCGTGGTGCGCCTGGAGACGAGCCGGGGTCCACCGGTCGTCTTCACTCCTCACAGCGGCGAAGCCGGCCCGGTGGAGGTGGAGCGGCGCGAGTTCAAAGAGGCCGTGGCCCGACTGGCGCGGCACATGCGGCCCGCGGCCAATCCCCAGTGGGCCGCACGGGACCTCTTGGGCGTGGAGGCTCGCGGCGGCGCGTACCTCTTCAACCCGCGCACCCGGCAGATGACGCCGCTGGAGAAGGCGGCACTGACCTCCGACATGCCGCCAGCGGAGGAGGAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 7361-4919 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLW01000222.1 Myxococcus sp. AB025B NODE_222_length_17057_cov_39.0193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 7360 36 94.4 39 T.....................T............. ACGAAGCATTCGGGCTTGAAGTCCTCCTGAACGGTGATG 7285 36 94.4 40 ..T.......G......................... TTGATCCACCCACCACGAGGGTTGACCAGAGAGGTCACTT 7209 36 91.7 34 ..T..............A..............T... TCCGTGCCGCTAGCGGAGAGGTCGGGCGTCACGA 7139 36 100.0 40 .................................... ACCTCCCAGTCCGGGTCCATCTGCACGAGGGTCGTGATCG 7063 36 100.0 38 .................................... CAGAGAATGTAGTAATGTGGCCCCTTACCTTGTGCAGG 6989 36 100.0 35 .................................... CGTGCTTCTTCCGCATCCTCGAAGGCACCACGGTC 6918 36 100.0 38 .................................... ATGGCATCCACCTCGGGGGGCGCTCGAACTCGAGCTTG 6844 36 100.0 38 .................................... GTGCCAGCCGAGCAGGTGTACACGCGATCATCGGGGAT 6770 36 94.4 38 ...TT............................... CGCGTGAGCGCGTTGGGGCTCGCGGCGTAGATGGGCGT 6696 36 97.2 34 .A.................................. CCATGGACGAACGTAAGCTGATGCTGATTTCCCG 6626 36 100.0 38 .................................... GCGTACTGGTTGGCTCGCCGTGCGTGCACCACGTCCTT 6552 36 100.0 39 .................................... GCCGTGGGCGTGCCGCTGATGCGCAGCAACGGCTGCACG 6477 36 100.0 42 .................................... CATTTGCCACTCCTTTACAGATATCGGAACAGGACGACGGTG 6399 36 91.7 38 ...TT.......A....................... CTGGCTTCCAGCTCACAGGCGAGTTCGCTGGCCCGACG 6325 36 100.0 34 .................................... CGCTCCTGCGGCGTGGGACGGCACAGGTGGACGA 6255 36 91.7 38 ...TT..G............................ ACGCGGCGCACCTAGAAGTCGTCCACTTTTAATTAGCA 6181 36 91.7 41 ...TT........A...................... AGCTGGCGGGCCTGCCCCTTCGACGCCCGCGCCCGCTGCGC 6104 36 86.1 35 T..TT........A....................T. TGGTGCCAGCAGCGCTCCTTCGACTAGCCCACGGT 6033 36 88.9 35 ....T..G..T..A...................... CGTTCCGGATGTCCAGCAGACTCCAGATCATTCCT 5962 36 100.0 34 .................................... GAGGATGCAGCGCTCGATGATTGAGCGCGCTGGG 5892 36 94.4 40 ....T.......A....................... GTGTGCACGCACATCGGCTCGAAGTGCTTCTCCGGGTCAC 5816 36 100.0 38 .................................... GTGGCGTCCACGTGCCGGAGGAACGCCCCGCGCTGCTG 5742 36 94.4 35 G...........................C....... TGCAAGAAGTGATTGTCCGTCGCGAGCGCGAGCGG 5671 36 94.4 35 ....T.......A....................... CTCGGCGTCAGCGACCCGTACTCGGCGCGTTCGTT 5600 36 100.0 33 .................................... AGCGCGCCGTCCCGGACCTCAAACCGCTTCCAG 5531 36 97.2 37 .......G............................ TCGAGCATCTGGACGAAGGGCTCCGCGTCCTTGGACT 5458 36 100.0 35 .................................... TGTCCCTCGGGGGAGAGGCGCACGACGTGGTGGAC 5387 36 94.4 38 .............C.....................A AGGCAGCGGTCGTTGACGACCGTGTAGCCGGGCAGGGG 5313 36 100.0 34 .................................... AGTTGCTCGACAGGTGAGACGAGGAAGATGTCCT 5243 36 94.4 36 ...TT............................... TTCGTCCACAACACGCACAGCAACCCCTGTCTGTCG 5171 36 91.7 32 ...TT.............................G. CGATCACACCATGATCGCCCCCCGTGTTGGGG 5103 36 88.9 41 ...TT.......TC...................... ATCTCGATGGAGCCCATCAACTTCGCCTTGGCGGCCGCCTC 5026 36 94.4 36 ...TT............................... TCAAATCAATCATGTACTTTCTATTCGCATCTGCGT 4954 36 94.4 0 ...TT............................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 95.9 37 CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TGCGCTGGGCCGCGGACCGGTTGTGCGAGGCGCTGCGTGACTTTGGCGTGGGGGGCAAGACGGCCGCGGGATACGGGCGGCTGGTGCCCGAGGGGAGCGTGGTCGTCGCCGCGCCGCGGGTGGTGTCTCGGCCGTCACCGGAGCGCGACGCGTTCAAGGCGTGGGGGGAGGCGCAGCGGGCGGCGAAGACGGAGCAGCGCAAGGTGCTCGAGGACTTCGACGCGCAGTGGCGACCTAGGTTGATGCCCCTGTCGCGCGAGGCGCGGAAGGAGTGCGCAGAGGCGCTTCGCGGGTGGGTGAGGAACCCCAAGCTCCAGGAGCGTCGCGACGAGCTGCTCAGGCTCCTGGTGGACGGCGCCTGAGGAATTCCTTCTGGGAGCGTCACGAATGCGGCGTGACGCTCCTCACGGGATGCATGTGGCGGATGAACAGCGTCCGCCCATGGTTCGACGAAGCGCTCTTTGTCAGATGAATAGGCGTTTGGCGTTTCGAGAGAGACT # Right flank : GCGAGGACGCGATCCTTGATGACCGCGAGCACGGGACCGAGGAGCTTATCCTGTATGCGGAGACAGCCCGAACGCACGCCGAGCAACACCTCGGGGCCATGAAGCTGGCCCGGCGCGTAGTGGTGGCCCGTGTCAGCGCCGAGTCCCACCGGTGAGTGCTGGCTGCCGGTGCCCGCGCCGAGCAACCCCACGGAACCCAGGGGCTCGCCCACTAGACTTCTTCAAACGTCGCCCCGGTGGCTCCCATGCTTTCCAAGGCGTCTTTGATGTCCTCCCGGACAATCAGCACGATAGCCCAGCCCTGGGGACGGAAAACCTTGGCGTCACCTACCCGCGCGGGGTCGATGCGCATGCCACGCACGTCCCGGTACTTCCCCAGCTTCTCGGGCCGTCCATCCTCCGGGGTCCATTTCCTGACGAGCCTGGATGCTCGCTCGTCAATGCACTGGATGAGCTGGGTCGCCACGAGAATGACGAACGGCTCAGGCTGGCCCTCAATC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 537-288 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLW01000475.1 Myxococcus sp. AB025B NODE_475_length_5045_cov_30.3638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 536 34 97.1 40 ................................A. GGTAGAAGCTGAAGCGCATCCCCTCCAAAATCACTCCCTA 462 34 100.0 41 .................................. GGCCAGCAGACGGCCCTCGAGCAGGCGTACTACGAGGGCTA 387 34 97.1 32 ...........................A...... GCCGACTACGCCGCCTACGCTGCCGCTGACGC 321 34 97.1 0 .................A................ | ========== ====== ====== ====== ================================== ========================================= ================== 4 34 97.8 38 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGC # Left flank : ACGGAGGCACGCCGGGAGGCCGCCCCGAGCTGATGCTCCCCACGGACATCCCGGGTGGAGCGCTCCAGTCCATCCCCGTGACGCTGCCCTGAGGCTGTGACCTCCCGGCCTCACACCTCGTCGAATCGTCCGCCCTGGATGCCGTTCGCCTCCAAGGCATCCTTCACCTCTTCGTCGACGATGAGCGGCACCCGCCAACCCCACAATCGAAACACCTTCTCGGCGCCGACCTTCGACTTGTCGATTCGCAACCCGATGACGGAACCATACTCTCCAATCCGGTCCTCATGGTCCTCCGCGGTGCGGAGCTGGACCTCTTCGGAGGCTTCGTCTCGAAGAACCGTCGCTCCACGACTCACTCCTCGGCGCCCTTCACGACGAGCTTCCGCAGCTTGGACCCTTCCCTTACGAGATCCCGCGCGATTCGAGCAAGCTCCCTCTCGAGCGCGACCCGACAGGCCGCGACGGAGCCGCATCGGCATGAATCACGACGTCGCCAC # Right flank : CAGCCCATTCTGTACGGCCCCTCACCCCGTCTGCACCGTGAGCACGGGCACATACCGTCCATCCAGCGCGAGCTCATGCACCACCACGGGCCCGACGGCGTTGAGCCGCTGTCCCAGGAACAAGGCACACGTCGAGGGCGCGAAGAGCAACAGGTGTGTCATCCTCACCCGGTACCGGCTCCGCGCGCGACGAATGAACTCCCGAGCCTGCACGGCGAACGCCACCGCGTCCCCCGCCGAGCGCACCGCGCCGTCCCCCGTCCCCTCCTCCGGCTCCAGCACCAACAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 30655-30414 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLW01000057.1 Myxococcus sp. AB025B NODE_57_length_40368_cov_34.4778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 30654 28 100.0 41 ............................ GGCCGCTCGCCGTCGAGCAATACGGTGGCGGCTCCGACCCC 30585 28 92.9 44 ......G.................T... AGCCGTGGCGCATCCCCGGGCAGCTCCGTTCCATCCACGAGCCC 30513 28 100.0 44 ............................ AGTCGGGGCTCGCCGTCGGCCAGCACCGTTGCAGCGCCGAGTCC 30441 28 89.3 0 ......T..C..T............... | ========== ====== ====== ====== ============================ ============================================ ================== 4 28 95.5 43 GAGCGCCCGGGACATCGCCTCGGGCGCG # Left flank : ATCTCCCAGGCCCTTCCTCCGCCCGTGCCTCGCAAGCGAGGGCTGGGGCCGCTGGGCGTGGGGCTCGTCGCCGCGGGCGTGGGCTCCACCGTGGCCGCGCTGGTGACGGTGCTGGCCGTGGGATTGAGTTCGAGTCGCACGGTGAACCCCACCGAGGGCGCGACGACGAACGCGGGCGCGACGACGGCGAGCGGCGAGACGAACGCCGAGCCGCCCCTGCTCGTGGACCCGGGCAATGCGCGCGCCGTGACGGGACGCGCGGCCAACGAGGGGCCTGGCGGAGAGAACGCTGGCACCGCGAAGGTCGAGCGGACCGCCTCGGAGGAAGGCTCGGGCACGAAGCGCCGCTCGTCGCCGGCTGGACTCAGCGCCCGCGACATCGCCGGGAATGGCAGCCGGGGCGCACAGCAGGACACCGGCTCGCGGGGTTCGCGGACCGATGAGGTCTCAGACGGTCAGCGCGCCGCCGGCTCCGGCAACCCGGTCGCGGCCACCGGCAT # Right flank : GTCCGGCCGGGCAGTGCCAGCGCGGACGTGGAGGTGGCGGCCTTCCCCGAACCCACCGCCCCCAAGGCCGCGCCGTCGAAGCCCACGGGCCCCGTGACGGAGGCGGACGTCCTGCGCCTCTACGAAGCCAATGACCTGGCTGGCGCGATGGACCTGGCCAAGGGCGCTCGCCTCAACACGCTCCACGCCCAGCTCGTGCGCTTCGAGGCCACCAGCGCCGAGTCCCGCAAGGCGCTCGCGAAGGGCGACACGGCGCGCGCCATCTCCCAGCTCGCGCTGGCGACGCAGATCGACCAGGAGCTCTCCAAGGGCTGGAGCCGCCAGGGGCCGCAGCTGCGCAAGCAGCTCTCCATCCTGTACGTCCGCTCCGGCGTGGACCACGTGAAGGCCCACGACTCGAGCGCCGCGCGGGCCGCCTTCCAGCAGGCCCTCAAGTACGACTCGGGCAACCGCAGCGCCATCGAGGGCCTCAGGCGCCTGGAGACCACCGCCGAGTCAGC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGCCCGGGACATCGCCTCGGGCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 25212-33834 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLW01000013.1 Myxococcus sp. AB025B NODE_13_length_62987_cov_37.6656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 25212 37 100.0 34 ..................................... CTCACCCAGTTCGCTGGTCTCGGTTGCGCTGAGG 25283 37 100.0 32 ..................................... GGGACTCGGTGCTCTGGTAGGCCATGTGCGTG 25352 37 100.0 33 ..................................... TCACGTGCGCGCAGATGAAATACGCCGTCGCGG 25422 37 100.0 36 ..................................... ATGGCGTCGAACTTCGCGATGAGGTCCACCATCGGT 25495 37 100.0 33 ..................................... ACCGTGCCGGCCGCGCTGTAGAACTCAATCTCC 25565 37 100.0 35 ..................................... AAATCACCGCGCACTTGCACTCGGAGGACCACTCC 25637 37 100.0 33 ..................................... GACGTCCACCATCGCCGTCCCCTACAAGGGCAT 25707 37 100.0 36 ..................................... AGGACGGAGCGGCCATGCTCCTTCCAGCCCTGGAAG 25780 37 100.0 34 ..................................... ACGGGTGGTGCAGTCGCCTGTGGAAAACTGGGAT 25851 37 100.0 32 ..................................... AGGCACCGACCGTGCCAGCGTTGTTTGCTGGC 25920 37 100.0 32 ..................................... GTGCGGATGCGCTGGTTGAGCGTCATGTGGTG 25989 37 100.0 32 ..................................... TCGGCGTAGACGGTCCGGATGACCTCGGGGAA 26058 37 100.0 32 ..................................... TCGAAGGACTGCACGCGGTACTGGTCCGCGAA 26127 37 100.0 34 ..................................... CACAGCTACGACGTGGGCATCGGCCTGAAAGAGA 26198 37 100.0 35 ..................................... TCGGCGGACTGTGGACGGAGCATGCGCACCGCCCA 26270 37 100.0 33 ..................................... CCGCTCACGTAGTCGGGCGACGACGCCAGCCGG 26340 37 100.0 33 ..................................... GCGATGCGCTCGGACGTCGCCTCCGCGATACGC 26410 37 100.0 36 ..................................... TCGTTGTCCTGGCCGGACACCATCCGGCTGGTCCAA 26483 37 100.0 36 ..................................... CGGAACACCACCTCCTGCCCCTCGCGGAGAATCTGC 26556 37 100.0 34 ..................................... CTTCAGGGCCTGGGCTCCGGCGGCGAGCTGGGCG 26627 37 100.0 37 ..................................... CTTGCCTGACTTCGCCATGGCTACCCCCATCTGCGTT 26701 37 100.0 34 ..................................... TCCACATCCACGTTGCAACCAGACACCGTGCACT 26772 37 100.0 35 ..................................... GCACCTTCGCGCGTGGACAGGTACGCCGCCGAGTG 26844 37 100.0 33 ..................................... CGCCCATGTCACACCTCCCCAGGTGCGAGCCTG 26914 37 100.0 38 ..................................... CCGGACAGCGCGCGGTCGAACCGCTGCGGCTGCTCAAC 26989 37 100.0 35 ..................................... GCGCACCTCGCCGCGCAGCTCGACGCGGGCGGGAA 27061 37 100.0 33 ..................................... TCGCCGGTCGCGCCGTTCGCGACGTCGCCGGTC 27131 37 100.0 33 ..................................... CAGTCCGTCACCCTCGACCGGTTGCGCCTGGAC 27201 37 100.0 36 ..................................... CCGTCGCTCTACGTCGCACTCGACCTTCCGGCCCGG 27274 37 100.0 33 ..................................... AGCGCAATGGACTGGTTGAGGGTGCGGTTGGAG 27344 37 100.0 35 ..................................... GGGAGGATGTACTTCATCGCCTCGCCGGCCGCGGT 27416 37 100.0 35 ..................................... ACTCCGGTGGCCAAGAGGTAGCCAGGGCGAGAGGA 27488 37 100.0 34 ..................................... TAGAGCGGGAGGTCTGGCGGCTTCGGCCTGTCCA 27559 37 100.0 34 ..................................... TTCACCTTGCTGGGGTCCAGGCTCCAGCCGTTGG 27630 37 100.0 34 ..................................... AGGTGCTCCTGCTGACGTTGGACACGGGCATCTG 27701 37 100.0 34 ..................................... GGCTTCGTCGTTTCGCAGCATGGCTAGAGTCTCG 27772 37 100.0 32 ..................................... AGGAGCACATCATGCAGCTCCGGACGTTGGAC 27841 37 100.0 37 ..................................... TAGAAGCACCGCGCGCGGGCCGAAGTCGGGCACGGAG 27915 37 100.0 34 ..................................... TTCGCCACCGTCGTGTACGGGTGGCCGGGCGACT 27986 37 100.0 35 ..................................... AGCCGCATCATGGGCGGGTGGATTAGCGAGGCTGA 28058 37 100.0 33 ..................................... TTGGGAGCTTTCGGCGCGGCAGCCTCGGCGGCG 28128 37 100.0 34 ..................................... CCGCCCATGGAGTCGACGATCTCCAGGGCTTTCA 28199 37 100.0 35 ..................................... CGGTATGAATGCCTTGGGCGGGCGCATCACGAGGT 28271 37 100.0 33 ..................................... CTGCCTCCGGGCGGGATGGGGTACGCCAACGTC 28341 37 100.0 34 ..................................... CACTTGCCGTACTGTGTCTGCGAAATCCCGAAGA 28412 37 100.0 34 ..................................... AACGAGTTGAAGGTGAAGGTGAAGGACGCCTCCG 28483 37 100.0 32 ..................................... CGCTTCTGCCCGGGCTCCGGCGGGGGCGCGCC 28552 37 100.0 31 ..................................... TGCTCGGGATGCTGCTCGGCCCCAGGGTCAT 28620 37 100.0 34 ..................................... CCGCTCGCGCTGTCGCATCTGGGCAAGGGAGTAG 28691 37 100.0 35 ..................................... ATATGCAAATGTGAGCCGGGGTGGCAGTGCCTTTC 28763 37 100.0 34 ..................................... ACCTCGAAATGCATGTCATTGCGCGCGTCACGGC 28834 37 100.0 35 ..................................... CACCGCGCCAGGCCGAAGCCCGGGGCCACCCGGTT 28906 37 100.0 36 ..................................... CTCTTCGCCATCATGGACCGGGAGAGCCTCGGCGTC 28979 37 100.0 35 ..................................... CGGTGCAGGCGGGGACGCCCCACCAGCAAGTCCTG 29051 37 100.0 34 ..................................... GTCAACAGCGCCAACTCCTTGATCGTCTTGTCCT 29122 37 100.0 35 ..................................... CACGTCTTGTCCGCGTCGACGTCGCCCGTCAGGAA 29194 37 97.3 32 ............................A........ TTCTTGCTCCTGCCCTCGTGGCGCTGGGCCTC 29263 37 100.0 32 ..................................... GGGTTCCCGTGCTCGGGGCGCGGGCCTGTCTG 29332 37 100.0 36 ..................................... GGTTTCTAGGTGGCGGCCGTTCCAACGGCGGCCCGC 29405 37 100.0 35 ..................................... CGGGTGACTCGTGCGCGTCCGCCACCGACAGACCG 29477 37 100.0 33 ..................................... CCGATGCAGCGGCACAGGCGGCCTGAGCGGCTT 29547 37 100.0 37 ..................................... ACCGGCTGCCCCGTCTTGGACGACAGGAACTGATAGC 29621 37 100.0 35 ..................................... CCCGAAGTCCGCACGTACATCGCGCCGACGGGAAT 29693 37 100.0 35 ..................................... CTCCTCCGGAGAATCGACTTCCACCGGAGCATCAT 29765 37 100.0 35 ..................................... CTGGAGGTGGGCGTCTCGCGGGGGGCGGGTGCGCG 29837 37 100.0 32 ..................................... GGTTGGTGCAGGCCCTGTTGGTGCGGTGGGCG 29906 37 100.0 37 ..................................... AGCGCTACCCACCGCGCCGGGGGGCCAGCGGTGGGCA 29980 37 100.0 35 ..................................... CTGACGCTCGACCTGCGCAAGGCCGAGGAGTGGTC 30052 37 100.0 34 ..................................... CGCTCTCTGACTCAGGGCCGGAATCCCTGACTCC 30123 37 100.0 34 ..................................... GGGTCCTCGAGGGCCTGGTTGCGAAGGCGAAGGC 30194 37 100.0 33 ..................................... TCGGTGCTGGCTCCGGTGAGCGGTAGAGGACCG 30264 37 97.3 34 ...................G................. ACGTTCACGCGAGAGCCCACCCCACCACGCCCGC 30335 37 100.0 35 ..................................... ACCCACTGCATGTTGAGGTGGCAGAACCGGGTCCG 30407 37 100.0 33 ..................................... GGAGTAATTCCACGGACCATAGTGGAGGCCATC 30477 37 100.0 33 ..................................... ACGCAGGTCTGTCAGCAGCCCTTCGAGCCGAAG 30547 37 100.0 32 ..................................... ATGAGCAGGTCGTGGTACGTGATTGCGCGGAG 30616 37 97.3 33 ...................................G. ATCGACACCGCCGGCAAACCCTTCCCGCGCCTC 30686 37 100.0 36 ..................................... CAGTTCCCCACGGTGGTGGTGCGCCACCTGTACCGA 30759 37 100.0 33 ..................................... CGATGCACGTGGTGGTGAGGGTCGGCGTCGCGC 30829 37 97.3 35 .......G............................. CCCGACACCGGCAAGGTGACGCCCACGGTGTCCGA 30901 37 100.0 33 ..................................... ATGGCACGTACAACGCCGCCTATCCCCAGTGCT 30971 37 100.0 32 ..................................... TCGCCCGGCACCAAGGCGTGGCCGCGTCGGTA 31040 37 97.3 33 ........C............................ CTCACCGGGCAGATGCAGACGGTGGGTGGTGAC 31110 37 100.0 34 ..................................... GGGTTGCTCTTCATCGACCTCGAGGCGCAGTACC 31181 37 100.0 32 ..................................... TCGAGGAGGCGGCCACGCGCCGGGCCATAGAG 31250 37 100.0 34 ..................................... GTGAGGTGTCCTTGCTCGCGGCCTTCTGCGCGGT 31321 37 100.0 33 ..................................... GATGATCATGCTCTCCCCCTTCGTTGCGGAGAA 31391 37 100.0 33 ..................................... AAGTACGCCTCGCGCGTCACCATCTGGAAGGAC 31461 37 97.3 35 .............................C....... CTCGCTTTGCTGTCCGCGCTGGGTCTTCGTCTCAA 31533 37 100.0 32 ..................................... TTCGCCGGCTCCGCGAGCACGGCACTGGCGTG 31602 37 97.3 33 ...............T..................... TTCACCAGCCGCGTCGACCTGCGGAAGCTCCTG 31672 37 100.0 33 ..................................... TCGCTCACGGTCGCGATGCTGCCCGCCTGCACT 31742 37 100.0 32 ..................................... GTTCCCCTTCGGCTTGGGCGGGGCCTCGGGCT 31811 37 100.0 37 ..................................... CTCTCAATCCTTGCTGACCGCTCCACCCGCCTCACCG 31885 37 100.0 34 ..................................... CGGTGCAGGCGCCTTCTGCTGCAAACCCCTAGGA 31956 37 100.0 32 ..................................... GTCCAGGACGACGTTCGCGGGCCAGCGGCCGA 32025 37 100.0 34 ..................................... GCGCCTTGCCGAAGAGTCGTCAGACGTTCACGCA 32096 37 100.0 32 ..................................... TCGGCGTAGACGGTCCGGATGACCTCGGGGAA 32165 37 97.3 36 ...............T..................... ATCGCGCCGACGTCGACGTGGCTCCAGGTGCAGTTC 32238 37 100.0 32 ..................................... AATCCGCTCGAGCGGCCCAGCGACACGGACAA 32307 37 100.0 33 ..................................... TCCTGGAGGATGTGGCGAACGTTGGGCCGGTGG 32377 37 100.0 34 ..................................... TGGGGGCGCTACGAGGCGGTGCTCTCGTACTTCT 32448 37 100.0 36 ..................................... CAGGACGCAGTGGAGGCGAGCGCGGCCCGCCTGGAA 32521 37 100.0 36 ..................................... CCAGCTCGCGCGCTGAAGGGTGGGTGCTGGACAGGA 32594 37 100.0 34 ..................................... AGCACCTCAAGCGCGTCGTAGTCACGCCCGCGCA 32665 37 100.0 34 ..................................... CCGGGTCGGTACACGCGGCAGAGTGCCCCGGGAG 32736 37 100.0 33 ..................................... CAAATCAGGCGACCGCGGATGTGGAGTTGCCGC 32806 37 100.0 34 ..................................... CCGAAAACGCCGGGGTCCGACGCGTAGCGACCGA 32877 37 100.0 34 ..................................... ATCCCGTCGGGCATTCGGGTCTACGACGAGACCG 32948 37 100.0 36 ..................................... CAAATCGACGGTGGCGACGTACCGGATGCTGCGGTC 33021 37 100.0 34 ..................................... ATTCCCAGGTGCGTACCCTCCACCATCGCCCCGA 33092 37 100.0 33 ..................................... GCGTCGGCCGCCCTGTGCGCGCTCGCCTTGCGC 33162 37 100.0 34 ..................................... AGCACTATTCCTGCCTCCGCCTGTGTCTGTCCGT 33233 37 100.0 33 ..................................... ATCCACTGGAGGACGTAGGCGGGCATATTCTCC 33303 37 97.3 32 .......................A............. CCGGCGCGGGTGTAGTTGGCGAGGCCCGTCAA T [33308] 33373 37 100.0 35 ..................................... ATCGCCCTGGGCGTGGCCACCCGCGATGCGGCGCA 33445 37 100.0 35 ..................................... TACGTGGGGAACAAGCCCCAGTTCGCCGCGACGGT 33517 37 94.6 33 .........T.............A............. GCCAGCACGGCGCGGCGCACCCAGGCGCGGTAC 33587 37 97.3 35 ....................A................ AGTTAGCCGAGAGGTCGACAGCTTTCGTGATGACG 33659 37 97.3 35 ..........................C.......... TTCTCTCCGGTGGCGGGGTCGACGCTCACCACGAT 33731 37 91.9 30 ............A.T........A............. CAGCATGCTGGTTCAGTTGCATTGCGAGAG 33798 36 83.8 0 ..........C..TTTT.-.................. | C [33810] ========== ====== ====== ====== ===================================== ====================================== ================== 122 37 99.5 34 GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Left flank : CGGAAGGTCACCGTGCTCGTCTGCTACGACGTTCAGGTGAGTGACCCGACGGGGCCCAAGCGGCTCCGGCGGATGGCTCGGATGTGCAAGGACCATGGGGTCCGGGTGCAGTACTCGGTGTTCGAGTGCGTGCTGGAGCCGAAGGATTGGGTCGTGCTGCGCGCACGGCTGCTCTCGGAGATGGATGCGGAGAGCGACAGTCTGCGGTTCTACTTCTTGAGCGAGGATGTCGCTCGGAAGACGGAGCACCATGGCACGCGGGTTCCATTGGATGTCGAGGGGCCGCTCATCCTGTGAGCGGCCTGCCTGCCCTGACTGGGGCGCGCGAACCTGTCTCGGTGCGTGCTTCGTCGGAGGTTCGCGCTCTTTGAAATCTCCAATAGTCGTAGGGAGTTACGCGGAGGTGACGAGGCACGCGGACTGGATGGACGGGCCTGTGGACCCAGGTTCGCGCGGACCGGCCGGATTCCCGAGTGATTGTGGTAGCTTGGACGGGCAGG # Right flank : CGACTGTGTCGGACCACTCATGCAAACGCGGCTCGTTTGCTAGGGGGGATGGGGCGAGGTCATGGAAGCCTCCACATGGGAGGGGCGTGCAGTACCCAGTCCCCCAGCCGGTTCGACGACAGACCGGGATGGTAGGTCCTGTTGCCTATGCCCTCCCTTCGACCCCTCTGTCTCTGGCTGCTTACCCTTTTCTGGCTGGGATGCGCCACCAACGAGAAGCCTCCAGTGCAAATGGCATGGGAGGCGGCGGAGCTGGAGTGCGAGGATCCCCGAGAAGACCAGTGCGTCTTTCTCGCGTGCCTCGGAGATGCCTGCGGCTTCTACCGCTGCGAAGACAGTCCCGGAACGTTCGAACTGGCCAGGTTCCCGCCTGCTCGGCCACCCGCGGCTGCCGCCTCTCCCGGCAGTCCAAGGAGAAACTGGGGAGCAGCGCAGAAACTCCCTCCAGGGGCCGTCATGACGTTCCCGAACTGGAATGGAGCCCCTGAGCGGGTCGTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //