Array 1 3-1435 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000028.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 .............................. GACTAAGCTGTAGAACATCCACCGCTCACTTGCCACGA 71 30 100.0 37 .............................. ACAAAGATCCTAGAAGTAACTGTGCCTGTAAAGAGGG 138 30 100.0 38 .............................. ACAGTCCTACAGCGTAAAGTATGAAAGCGAACGGCATG 206 30 100.0 37 .............................. ACTCAGGTAACAAAAATTACCTGAGTAACCATAAGAC 273 30 100.0 35 .............................. AAAGGGGTAAAAAAAGGTGTAGAAAAAGAAATTCG 338 30 100.0 36 .............................. CTTTACCGTCTTTCTTTACTTGGGCTCTCCATGCGG 404 30 100.0 36 .............................. GTCGCAGGGATTTCTTCTAGCGCATCTACCAGCCTA 470 30 100.0 36 .............................. GATACGAGACCTGAGACCAAACGCATCTTTGTTCTG 536 30 100.0 35 .............................. AATATTAGTGAATCATTTATGATTCATAGGTGAAT 601 30 100.0 37 .............................. TCTGCGTAATTTCGTCAATCCTCTGGGCCCGCTCTGT 668 30 100.0 36 .............................. AGAATGACTTAACAAGTATTATTTGTGACAGGACTC 734 30 100.0 39 .............................. AAGGAGTACTCTCTCATCACTGCTACCCTGATAGCCCCG 803 30 100.0 36 .............................. TGACGATCTTCTTCTTCGGGATCTGTCCCGAAGCTT 869 30 100.0 36 .............................. TAGAGTTCAATATTACAGGGCCCACGAATGTGTACG 935 30 100.0 38 .............................. TTTGCTGCGGAGGCGTAGCCTGTGACGGTGCTGCTGAA 1003 30 100.0 36 .............................. TTCTCCGCTATGATTTCCCAAGCCTTCGCAAAGGAG 1069 30 100.0 38 .............................. TCATCTGCAATTCGTCAAAGTAGCGATTGGCAACATAG 1137 30 100.0 35 .............................. TGGGTTTCCTTGTGTTGCCACTTTTTTCACCTATC 1202 30 100.0 39 .............................. CCGAACAAGTCGCACTGAGCATGCTCGGAGCTGCTGAGA 1271 30 100.0 38 .............................. GCAAAAGAGAAGGCAAAAGAGAATCAAGCCCCCGCAAA 1339 30 100.0 37 .............................. AATGATTCGGATCAAGTCAATAGTCTATTCGTAGCGG 1406 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.7 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : CGG # Right flank : TGGAAGAGGAAAGACAGTGAAAAGGAAGCGCTGTCCTGAGTGTATTCCTAGCAGGCAATATTTGCAGCTCTGAACCCGATACCGACACATACGCTGGACAAAGCCACGACTCTGAATCCAAGTCTTCGCCCGGGGAAGAGGAGGTGGTCTCTGTGGTCACTGCTATAAGGGTTACATATGCGGGCAGCTGATACTTAAAGGCCCATAGCTTGTAAATAGCCAGAAGTCAAAACCGCAACAAGGTTCCAACTTAATATAAAGACAGTTCCTCCAGCGAAAGGCAAGAGCCCTATCCACTTGTATGCATTCACTTTTAAGTAATCAAAGAGTCTGGTGAACCAATAGATCCCGCTCAGAGATAGCAACTTCACCCCAGTCAATACCATGAAGACGTTCAGGAAAGCCGTATTACCTAATATCAAGGGGTTGTAGTCACACTGCAATATCTCTAGGTGAGAAAAGAAGAGGGTCTCTGCGTAATCTATTAAATTGCCTACTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 13255-11890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000029.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13254 30 100.0 38 .............................. CGGATAATGAGATAAATCAGGTGAATCTCATACAGCAA 13186 30 100.0 37 .............................. GATTTCGGTGAAAACACTAAAATATATTCAACATGGG 13119 30 100.0 37 .............................. TCCTGCTCTTCATTAGACCTATTGTCTTCAACGTAAA 13052 30 100.0 35 .............................. AGTAGTTGAGAATTGACTAGATTCGATTAGTTCGT 12987 30 100.0 36 .............................. TGTAAGTGTGGAAGATAGACCGAATCTTCTTCTAGC 12921 30 100.0 36 .............................. TATCCCCGCACCTTGAATTCTGACTTCCTCGCCGCC 12855 30 100.0 38 .............................. TTTTTAGGGGGGCTTACACACGTTCCTTCCTCCACGTG 12787 30 100.0 37 .............................. GAGGAGTAATAGACGTAGCTTCCTTAACGGGGATCCT 12720 30 100.0 36 .............................. TCATCACAATCATGTTGGAAATTAAACCACTGTTAA 12654 30 100.0 38 .............................. TATGCTATTTCTTTCTTCTCCTTCTTCTCCATCTTCTT 12586 30 100.0 38 .............................. ATAATGATACCGACAACCTAACTCGTTTAATAATAAGG 12518 30 100.0 36 .............................. CAATTTAACACGGCACAACCCATAACCATAAACCTG 12452 30 100.0 38 .............................. TCTTAAGCCCTTTCTGAAATCCTCTAAGTTTGAGAAGA 12384 30 100.0 37 .............................. TCACTATACGGTCAATATGGAGGATTCATAGAAAATG 12317 30 100.0 36 .............................. ATGATACAACTAGCGTGACCCAATCGAGCAATGGAA 12251 30 100.0 36 .............................. ACAGTTTCAAAACTAAAAAACTCCTCATCCTCTTCA 12185 30 100.0 36 .............................. GGAGCTGAGCTAGCGGTACATTGAAAGTGGGGATTT 12119 30 100.0 37 .............................. TCTCGTTCCTCAACAATTCAGCCAAATCCTTAAGTTC 12052 30 100.0 38 .............................. CAGTTAGCCCCTATATTCATAGCACCTTTCGTGTTATA 11984 30 100.0 35 .............................. TATATGCTTGAGAGGTACTTATACCCCTCTGAATG 11919 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : AAAGCTCTTTGTATTTGCTATTTCGGTATTTGC # Right flank : TGGAGTGATTTTGCTATCGTTATGTTCTCAATTTCTCCTGGTTGCTACGAAGGAGCTCAGTATAATGACGGCAAACCCCGCTAACTGAAGCAGTGTCAAGGTCTCCTTTAATATCAACCAAGATAGCACAACCGTAAACACGGGCTCCATCGAAGTCACTATCGAGGCTATTATCGAGTCTGTCCTCCTCATCCCCCTGTAAAAGAAGATGTAAGCTATGACTGTTGCGACAACTCCAAGGTAGATCCAGTAAGTAGAGGAGACCGACACGTCTGGAGACAACAGGAAGGAGATCACCATGGTCATGGGGAGTCCCCATACAGACTGCGAGGAGATGATCTCCATGTCTGACATCCCCTTCATCTGCATGAACCTGGAGAACACTATGAGGAGGGCGTAGGTTAAGCCTGACGCTACCCCTAAGGCAAGGTCGAGCGTAGTTACGTCCGAGAGGTATATCAGGTATACTCCGAGGAAAACCATCACGGACGCCACCACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 4232-4949 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000034.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 4232 25 76.0 218 .......T.....T..AG..A...A CGATAAAGTTCGAATTTCATTGCGACCGAAACGAAATCATTTCAGGAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTATGAGGTGATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAAATGAGATTGAGGGTAAATAAAACCTTGA C,T [4235,4255] 4477 25 100.0 36 ......................... GAGGCTGTAACCACGACGTCGTATCTTCCCGCATTA 4538 25 100.0 38 ......................... TATTGCTTGCCGTAAAGATTAATGGTCATCTAATCACC 4601 25 100.0 42 ......................... GATTACATAATCACCTATTCTTACAATTGTATATCCTTTCCC 4668 25 100.0 39 ......................... AATTTAACAATTTTATTTCCTACTTTTATTTGAAGGTTT 4732 25 100.0 40 ......................... AAATATCGGATATTATACTTATCGTGATAATCGTGATTTA 4797 24 92.0 40 ......-...........C...... CTCCTAAACGCACCTATATGATAATCAACTTTAGACTCTG 4861 25 100.0 39 ......................... TTATTGACGTAATTTATGTCCTTCAAATAAAGGACTCTG 4925 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 9 25 96.4 62 GTTGAACCCATAACGGGATTGAAAG # Left flank : AGGAGAATTCACGTCAACTCCGTAGAACTATTATGGCCTAGGGGTCACTCAAGTCCCTCGTAGTGACCCCTAAAGTCTCTCGTCAGAGTTCATGTACCCGAACCTCGCTCCAAACTCCTTCATGAGCATCATGAGTAACTGCCAGCCCTCCAAGCTTTGGATCCTTGAGCCTTGCGATGTTCGTCCCACCAATAACCCAGCTAGACCTTACCTAGCTCTCAGGACTTGAGGAATGATATCCTTCTGCGTGAGGTTTGAGTCAGTTATATACTAGAATGTGACATAAATATGTATCAAATGCAATTTTTTTAAAAAACAGGTGTTCCTTCTAAAATTGCTGTTTACCGAGGCGAAGAGGTGTCCAAAAGACTCATCTTTGTGAATATTTTAAAGAAAGTTAAATATTATGTTCTTCTAGTTATTGAAGTAATTTCTAGGTTTCGTGTATGCAGTGAGTATTCTAGAAATGAAGAGCTTCGATGAATAGATTGTACTTAATA # Right flank : GATAACTTCAAGTTATAATTACACTTTCATGAAGTCATTGGATTCAAATTTATCAACGCTTTACTCGATTTTTGCATACTCAGCAAAATACGAAGCAATGAGAAAGATATGCGGTAGAAGTGACCTAGATAATTGTCTGGGTTACTTAACAGAGGAGTCAAACCTTTACTCCTCAATAGACCCCGCTTTAGGAGTGTTGAGTATAGGCATGGGAGTTGGAACTCCGATAGAAACCGATGAGAAATTTTTCTCTACTTTTTTGCCCATTTCGGGTTTCCTACTTAAGGTTACGGGTAAGGTGAGTAAAATGGGAGAAACTCTTAAATCCTCAATTTTTCAATAGCATATACTTTAAAGGATATAATAAAAAGTCAAAAAGTAAGTAAATACGACGTCACTGGGTTTTTAAGGGACGGGATAGACATGTTCTTCAAAACTACATCTGTAATTGAAAATAAGGATAATAGGATAGGGATTTCAGTAAATGCTACAATATCTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 16604-14490 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000019.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 16603 25 100.0 41 ......................... GTAGAATATGCATATGCCGTGGTTCAACTGCCACGGCAAAT 16537 23 92.0 39 ......--................. AGGTATTATCACTGTCTTCCCTAACGCTAGCATCTCAAG 16475 23 92.0 40 ......--................. AAACAATATAATGCCTTGTATGTATGGCAACAAATACAAT 16412 25 100.0 37 ......................... TAAAAAATAAAACTTCTTAGAACGTATCCGTGCTCTT 16350 25 100.0 38 ......................... GAAAAGCGATACGTAGTGTTGTGTCAACACGCGGGTCG 16287 25 100.0 40 ......................... CAAAAATAAAAATACCAAATCTCACAATCCCATCATCTCC 16222 25 100.0 39 ......................... ATACCTAACTTAGGGCATAAGTCGTTAAGACCCGATAGA 16158 25 100.0 39 ......................... TGAAATTGTTTTAGCAACGTGGTGTTAAGTGTCATGTAA 16094 25 100.0 39 ......................... TTTCCAGCTCACTCTCGAGTTGCAACGCTTTGACATATG 16030 25 100.0 41 ......................... TTGTCATAATACTCAGGTAGCTTTTCATATTTATTGATGAG 15964 25 100.0 40 ......................... ATGTATTTGTCAAGATTTAGTTTATCTAACTTGTTTGCAA 15899 25 100.0 39 ......................... ACAGAACCGTTATTCAGGATAAAGTACTGGTCTCCACCC 15835 25 100.0 38 ......................... ATTCCATGCTACCCCTGGGTAGGGCTGTAGCACATTCA 15772 23 92.0 39 ......--................. TCTGGAACTCATTTATAGCTTCAATATCCAAATCGTTAT 15710 23 92.0 40 ......--................. CTCATAGCCGGAGAACATATGATAATCATCGGTCCTCCGG 15647 25 100.0 41 ......................... TTAAATAGTTCATTTCCGACTGAATCAGTATTTGTATCCAT 15581 25 100.0 39 ......................... ATTATCAGTGTATTGGTATTCGAATACGCTGTTAAGTTC 15517 25 100.0 38 ......................... TGTTCCAAGTACCACCAAATTCATCCATGACAATACCA 15454 25 100.0 41 ......................... ACGGTCAAGCTAGTGCCGATTCTTATCTCGCCTCCTCGGTA 15388 25 100.0 38 ......................... AGTTAGTCAATCCGAAATATATTTTTAATATTACAAAT 15325 23 92.0 39 ......--................. TTAATCAGTTTGTTAATATGAAAATTAAGTAAATTATAC 15263 25 100.0 38 ......................... TGATATATTCCGACATAGAGCATTACCGTCATATTTTA 15200 25 100.0 39 ......................... GTGTGTCAAAAGATGTCATGTTTTCTTGATTTTGATTTT 15136 25 100.0 39 ......................... CGTCCAGCTCGGCTCGTGCGGGGGATAGGCGTACACCAT 15072 24 96.0 36 ......-.................. CAGTTTATGCGGGTAAAAGCGGTTTCCTGATATCTA 15012 24 96.0 38 ......-.................. GATAGAAGCCTCTTCGGCTTCTATCGTGTATTTATCCC 14950 25 100.0 35 ......................... TTAGCTATACCGTATCTTTGTCTGTCGATATATTT 14890 25 100.0 34 ......................... TAAGGTAGGAATACGCCTTAGCCCCCCGTATCCC 14831 25 100.0 38 ......................... ATACTTACTTTGATTTGGGTTTGGGTTTGGGTCGCCAT 14768 24 96.0 39 ......-.................. TTTTCTGACACTCATCATGACAGTGAGGGGCATGACAGC 14705 25 100.0 39 ......................... TCTCCTTCTCTCATATATTGTTTTGGATTTTACTTTTTC 14641 24 96.0 38 ......-.................. TTCAATGAAATAGGTCCGGTTAACGTTACCCTTGATTC 14579 24 96.0 41 ......-.................. TACTCTTCCAGGGTATTGATCAGTTCGTTGAGTTCTTTCTT 14514 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 34 25 98.2 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : ACAGAGTGTAACTTTTATTTAAAAAAATATATATGTAAATAAATATAAAAATATTAAGTTTTATTATTCCTTTACTAAAATGAGATACAGATATCTTAATGTAATTCAGTAGCCTTTACGATTCTCTTAATCCATCTATTCTTATAAAGTATTTTAAAGCAAGATTTGTATTTTATTTTAAGTACAAGTTATAAAATGAGAAGAGAAAACTATTTTATTATGATTTAAATCTTTATATGATTAAAAGATTGGTAAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCGAAACGAAATTCTTAGATTAGTTTTACATTTATAAATAGGGTGGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAGAAGGGTCGAATTGTGAGGTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : CTTCGCTATTTCCTCTCTACCTATGACAAACCCTCTTAGGATAGACTCATAACGGAATTTTAGCAAGATTTAGTCTAAGTTTGCGATTCACGTCCATTTTATAAAAATCAAGATATATAAAAGAACCAAAAATAATAATAGTTATTAAACTCCTTTATTTCAAGTATGTATATGCAAAAGTATAATGAGTATAAGGAGGGAGACGAGTTAGCAAAAGTCTTGGCCCTTCTTCTATATGTTCAGAGAGAATATTCCTATATTGATAAATTATCTCAGTCAGCGTCCAAGGATCTAGCATTGTACCACACGAGGGAAGCGTTGAGGGACTATAACTCTCTCTTGAACAGTGGGAAGATCAACGATCCCGAGGCCATCAACCTATCGAAAAGCATCAGATTCGACGCAGTTAATAAGGAGCTTGCCTTTATCAGGGCCATTAATTCTCTACCAGAATTAAGGGAGACCGTATCATATATTTCCGCCTCCGCATTAACCTTAGC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 24790-26717 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000019.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 24790 23 92.0 37 ......--................. GAGAACTTGCCATAGAGGAGTGTGGCTTCTCAGATAC 24850 25 100.0 36 ......................... AATTGCGGGATTTCCCCCGCGGAGGTGAAAAAATTC 24911 25 100.0 39 ......................... ACTCCTCCTACTACTCCTCCTACTCCTACTCCTACTACT 24975 25 100.0 39 ......................... CGTATCTGTAATGGCAATGGCAATACTGCGATAATAGCG 25039 23 92.0 39 ......--................. CTAACACAATACCCTTGCTCGTTCCTGTCTAGAGGAATC 25101 25 100.0 40 ......................... CCCTGTAAAATTTTCCCTACCAATTCCTTATATGAGACGA 25166 25 100.0 37 ......................... TATTAGTATTTGATGATTATATATAACCATGGACGTA 25228 25 100.0 41 ......................... GGGGTGATATGAAAAGTCCCCTCAAGTTTGAGGGAGGGTTT 25294 25 100.0 40 ......................... ATAAATGACATAAAAACTACAGAGGTCACGAAATCAATAA 25359 25 100.0 40 ......................... CGGTCATAGCGGACGGCACCACATTGATGCCGTCCTTTCG 25424 25 100.0 38 ......................... CAGTTTCCCTGTCCCATCCAAAGACATAAGAGTATTCA 25487 25 100.0 37 ......................... TGACAGTGTGACACATGAAAAGTATATGACATGTCTA 25549 25 100.0 39 ......................... TTTATTGCGACTCTGTTGAGCGGAACGCTCACGCCTAGG 25613 25 100.0 36 ......................... GCAACGTCGTCAGCAATATAGCTTATTTCAGTCTCG 25674 25 100.0 40 ......................... ATTTGTTGTTGTAGTTCATCAGCTCTAACGGGAAAACTGA 25739 25 100.0 36 ......................... TAGGTCTCCTCTTAGGTGCTGTCTACGGTCAAGCTA 25800 25 100.0 38 ......................... AGTATAAGCAAATATCGGGAAGAGCAGGAAGACAGAGA 25863 25 100.0 39 ......................... TTAAGAAGTGGTTGTAGATACTCAGTTCATCTATTTCTT 25927 25 100.0 39 ......................... GTATGATAATAATTTAAGTCGTCTTTTTTTCATGCTGAA 25991 24 96.0 39 ......-.................. GATTACCCAATCACCTATTCGTACAATTGTATATCCTTT 26054 24 96.0 40 ......-.................. TCTTTATGTATTTTTTCAGGAATTTATAGCCTTCATATAA 26118 24 96.0 40 ......-.................. ATTTTAATGTATGTATCGGTAGATAATTGTTTTACATAAT 26182 23 92.0 44 ......--................. TGGTAAACGATATCAGGCACTATTTTCAGGGCATGCCTACCGGT 26249 25 100.0 41 ......................... AAATAATAGAAGTATGTTGTCGCTTTATTCAGGTTGTTCAG 26315 25 100.0 40 ......................... TATAACATCAAGAGATATCTTTTTCATTTCCGTATTAAAT 26380 25 100.0 37 ......................... CTGTGGAATAAATAACATTCATCAAAGTTTTTGCATA 26442 25 100.0 34 ......................... CATATAGTTTTATATCAACTTCTTGTTGAAGTAG 26501 25 100.0 38 ......................... TGACAGCCTAATTTTTTTTCCATTGAACCCATATACAT 26564 25 100.0 39 ......................... TCCACTTCTCTATTCTCTTTATCACGAATCTGACGGCGT 26628 25 100.0 40 ......................... ATGATAAATTGATAGCGTATCATCCTGAACACGGAATTCA 26693 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ============================================ ================== 31 25 98.7 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : AGCGAAAATTTCAACTATTTTTCAATCTATTAAAATTGTAAATCTTACAGTATTAAATGTAAAATCATTAATATTAGATTTTGTATTAGATATTTAGTTTTTAGTAAATTTTTTAATTATTTATCTAATTTTATATTTCTTATATATGTAGATTATTCTTTTTCTAATTTTACATATACAAAACTTTTAAGGATCTATGATTTTGTAAAGGTCTTATTAGTATGTACCTATTTTTTAATTAAGTTATATCTAATAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCGAAACGAAATCCTTAGATTAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTGTGAGGTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : ATTAGTACCAATTTCTAGTTAATTTTTACCTAATTAAGTTTAATTTAAAATTATAATAAAAATCATAAAAGATTATCATGTTTGAAGGTCTCAATGAAATGGTATTACCAATTTATAATCCCCTTCATCAAGACATAATTATGGGAGGAGGCACTATAGCCTTCGTAAAAGATTGGGGAGCTTTCTTACACGTTAAAGACAACATGATAGTTTGCTCCTTAAAAGGGAAGGATATGTGGAGCGTCTCTCCAGTTGAGCTATCTTCCATCGTTTTTCTCGTCACTGGTTCGGTTTCTTCTGAGGTAATTGCACTAGCTAACGAGTACGGGATAGACCTAGTCTTCTTCAGGAAAGGAGAGCCCGTAGCTAAGGTGATACCCGCAAGATACGGCGGTTCCATGAAGGTTTGGCTATCTCAACTTAAGGCGTGGAAGAGTTCTCGGGTAAAGTATGCCTCCGTCTTCGTCAGAGGGAAGTTGAGGAACCAAAGGGTGGTGCTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 37-1066 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000041.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 35 .............................. TTTTATTGAGATGAGTGCACCTCAAAGTCCTAGTC 102 30 100.0 37 .............................. CTTTGGGTAAACATAGAAAGTGATCTTCCTTGGTTAA 169 30 100.0 37 .............................. TAGTCGTTCAATATGGAATACACACTAGACAAAACCG 236 30 100.0 36 .............................. TATGAGCATACTATCCTCTCTAGGAAGTGCCCTTGT 302 30 100.0 37 .............................. TATGTAGGCTGAGCTTTTTCATGAGTTTTCCTAAGAA 369 30 100.0 37 .............................. ACCAATACAGGATTCATCATTTGGGTAGTTTCAAAAG 436 30 100.0 38 .............................. TAGCCCTATGTATGAAGAACATCTTCTTTCACAATCCA 504 30 100.0 37 .............................. ATATCAGGGTCTAAGAAAGTCATTTTTCCTCACCTGC 571 30 100.0 36 .............................. CCGTGTAAAGCGGGATAAGGGTTATCATGATACATC 637 30 100.0 36 .............................. TCGGACGGTGTGTTAAGTATAGGAGGTGTACTATCT 703 30 100.0 36 .............................. TCATACGTGAAAGCCAAAGCCATGCCTTCGTTAGGA 769 30 100.0 36 .............................. CTAAAATCCTGTCAGTCTATTCAGTCTACGAATGAT 835 30 100.0 37 .............................. TCCCTGAACACAAGTTCAACCCCGCCTTCACAAAGGA 902 30 100.0 37 .............................. CTCAACTCAGACGCTCAGAAGTTTCCACTAGCCATAG 969 30 100.0 38 .............................. CACTTCGTAAAAATGTGTAAAATTGAAAGAAGACTAAC 1037 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : CATCATGAGGACGCCAGTGTTTCATGTACATTCATGG # Right flank : CAATGTGACAACTCTCATTCTTTATCTCCTCCTAGCCCAACAGTTGTCTCATCTTGGTTTCCCTCTCCTGTTCGGGTAGCTTGGCATTTGAACTATATCTACTAATGACGTACTGATAATGTTGTGTTAATAGGTTAAAATATTTGATAATATTAGTTTTTATTAAATAAGGACTTTTATTTTTAAACTTGTTAAATGTAATGATTTGAAAATGAATAGGTAAACTGCTGAGACGGATTACTGTTATGATCTGTGTGCAGTTAGGCTCCCTTCCGCGGCTGTAAAAGTCCTCATGTCTCTAAGTAACCCAGGGAAGTCACGGATGTGAAAGGGTGAAAGTTCAGAAGATATAAAGTTTATCAGATTTATATCTTAATAAATGTATTATTACACTGTATTTATACTCAGTCAGGCCTTAAAAGACAAGGTCTACGTTTCAGATCTACACTACCAGAGACCTCAATGTTGGCTACAAAGACGCTCATATCCAAGGTAGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 11-5379 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000036.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 11 30 100.0 35 .............................. CCCTGCTTCCCGAATACTAGGCTGAGATAAAGCCG 76 30 100.0 37 .............................. TATTTAGTGCGAATAAAAGTTTACAATGATACATCAA 143 30 100.0 37 .............................. TAAACCCATATTGGTAAAATGTATTCCTCGCAAATCT 210 30 100.0 37 .............................. CGTTCCCGGTTTTGAGGTTGTACTGATAGAAATATGT 277 30 100.0 38 .............................. TTTTCAATTTCTCTAAAACGTCCTCAACATTTATACCT 345 30 100.0 36 .............................. CATAAATCTTGGAAGAGTTTGATACGACGTGGTTGG 411 30 100.0 36 .............................. TCCCTATCACTGAGTGCTGTAGCATTCGGGCAAACG 477 30 100.0 36 .............................. TCCCTATCACTGAGTGCTGTAGCATTCGGGCAAACG 543 30 100.0 38 .............................. ACGTTCACATTCGGATTCGAAGTAGAGAAGATAGATGA 611 30 100.0 36 .............................. CTAAAGAATGGTAAAATTAAATGGACTAAGCTGAGG 677 30 100.0 35 .............................. TAGATTCCCCCACCACTTAGAACGCCAATTGATTT 742 30 100.0 37 .............................. CATTTATTTCCCTCTCTAGTTTTTTGATCTTCTTTTC 809 30 100.0 37 .............................. TATCGACATCTAGGATGAGTTTCAATTTGTCCCGTAT 876 30 100.0 36 .............................. ACCTTTCTTCACATCTTCTAGGGTTATGGGTAGACT 942 30 100.0 38 .............................. TTCCTTCAGATACAGCGTGCCTAACAGCTTCATAGCTT 1010 30 100.0 35 .............................. AAGAGGTCGCGGATGTTGTAGACGCATAGGTCATG 1075 30 100.0 36 .............................. TTTATCAGAAATCGATAACTGGAACTAATATTTATA 1141 30 100.0 37 .............................. CTAATTGCACTGTAACGGTATACGAGAGCAAAACGGA 1208 30 100.0 38 .............................. AGATAAACGTTTTTTTACCTTGCATGTTGCAATGAAAA 1276 30 100.0 35 .............................. CCTTCTAGCCATCTCCCTATAACTCGTCAGAAGAG 1341 30 100.0 38 .............................. TTCTGAATGAAGGATAATAAGAAGTTGCCTTCTGTGAG 1409 30 100.0 36 .............................. TCGGGGCGGCGGGTAAGGGTGAGAGTTTAAGCACAA 1475 30 100.0 36 .............................. TCTCATCAATAAGGCGTGCCTATGAGGAGGAAGATG 1541 30 100.0 40 .............................. ATGAGAAAAAGTTGATGCAAGTATGATCGTGTCGTTTTTC 1611 30 100.0 36 .............................. CAAACTACGGAAAACAAAACTGTGATGGAAGCAACG 1677 30 100.0 37 .............................. AAAGAGTGGAAAAAATGATTGAGCGCATAAGTGAGTT 1744 30 100.0 36 .............................. GAATCAATATCGGGATTTGCGGGAGGCGAGAGATAT 1810 30 100.0 37 .............................. CCCCGTCCTCATTGACGGCTATCCAGCCTATTGAGGA 1877 30 100.0 36 .............................. TTCTCTATTTTACATCGGGAATTATTCTCATATTCG 1943 30 100.0 37 .............................. AAAAGAAATTTACCTTTATTTTTCTTGTCTTTGACTT 2010 30 100.0 37 .............................. GACTGGGCTATCAGTAATTTGGACTCCGCCCCAGACG 2077 30 100.0 36 .............................. ATGAAAAGCCACACTAAGACTAGAATGAACGCTACT 2143 30 100.0 37 .............................. TGTGGAAGATGTTTCGTAAAAAACAACTCAGAATCTC 2210 30 100.0 38 .............................. CAATTTTTACGTAACCGGGGCTGAGAAGGTAGGCTACT 2278 30 100.0 36 .............................. ATTTTAATGTACTCATTTCACTCATGTCTTTCCCTG 2344 30 100.0 36 .............................. ATCTTCTCATATTCTTTCTGTGCATCGTCTTTTTTA 2410 30 100.0 37 .............................. AGAACAGGCTTTTGTTCCACAGTGTATCCAATATCGA 2477 30 100.0 38 .............................. AAGTACTTCCTGAAATCTACTATGGCTGTCGCAGGGGA 2545 30 100.0 37 .............................. GCATTGAAGACGTCTTCGTTATCCTGCTCTTTCTCTT 2612 30 100.0 35 .............................. GGTTCTAGGATTATCCAAATCCTTAATTGTTCATT 2677 30 100.0 36 .............................. AATAGTGAGAATCGACAAAGAACGCTGTGCCTACAT 2743 30 100.0 38 .............................. TACGACATCAACGAGAGAGTTAGGGTATGTCAGGAAAA 2811 30 100.0 37 .............................. TTTTGTCCGTGTATACGAAGAAAAACATTTTAAATAA 2878 30 100.0 36 .............................. CGGACTAGGCAGACTGTTAGATTCAGCTAAAACCAC 2944 30 100.0 37 .............................. GAATAGCTTCTTTTGTATTGGCAGGAGCGAAATAGTA 3011 30 100.0 36 .............................. AGATCTGACAGGAATGGGGCATACCATGGTCTGACA 3077 30 100.0 35 .............................. AGGGGATAATCGCGGTATTCATCACATATACGACC 3142 30 100.0 38 .............................. TGATAGAACGAAGTGCTAAGCTCATAGTGTTCCAAAGT 3210 30 100.0 35 .............................. GCAGAAAATTCTGGAAATTTTGACGAGAGAACATA 3275 30 100.0 36 .............................. GCTACCGAAACTATGTAATCCATATCTTGAGGTTGA 3341 30 100.0 36 .............................. CAAAATCAAGAATCTAACGCATATGGCTCTCCCGGC 3407 30 100.0 36 .............................. ACGTTAGCCATGTATTCATACAGCTCATTCCAAACA 3473 30 100.0 36 .............................. ATAGGATGGATCACTTGGGCGCTAAGGCCCTTTTCT 3539 30 100.0 35 .............................. CCAGTCAGAGAAGAGTTCGTCGAGACAAATATCAA 3604 30 100.0 43 .............................. CAAACAGAAGAAATTTCAGACTTTAGTTGACGGCAACGTAGGG 3677 30 100.0 38 .............................. CTTCAAGAGGAACGCTATAATCACATCGCCATGAGTCG 3745 30 100.0 36 .............................. GTAGATATACAACCATTTTTTCCCCTAATATACTAT 3811 30 100.0 38 .............................. ATAAAATCTTTCGATTTCAGTGGAAAAAATGAAAAAGA 3879 30 100.0 39 .............................. TATATTCGGAAAAATACAGTAACGATTAGGCGACCGAAT 3948 30 100.0 37 .............................. GTGAATAAGTCATCCATTCTAGAGGCGCACCAAATAG 4015 30 100.0 36 .............................. CTGTAATGCTGTCCGCTACTGCCTGTATGTTCTCCG 4081 30 100.0 35 .............................. TAAGTTAGTGCGATTTCAGAAAGCTCTTTCTTTAA 4146 30 100.0 38 .............................. TAATCTTCAGTCAGGCACAAATGAGATTCCAGTAGTGT 4214 30 100.0 38 .............................. GTAGAAGTGCTAGATATATTGCTCATACGAATATCTGT 4282 30 100.0 37 .............................. AAGCAGTTCTCAAAATATCTGAGAAAGGTGGATGAGA 4349 30 100.0 39 .............................. GTGGTAGGAGGAGAGGAACACCCTGAGGAGCAAGTTGAG 4418 30 100.0 38 .............................. TAGAACTTTCAATGGAAAGGATAAAGTTTGAGGATAAG 4486 30 96.7 36 .......A...................... CATTTTCGTTTTCTTTTTTTCCTTCGTCCATAACCA 4552 30 100.0 36 .............................. TGGTTTCTTTCTATCTTTCATACCCATTACTACTCT 4618 30 100.0 36 .............................. CTTTTGTTCTTCTTCTAATTTCTTTTGCTTTGGAAT 4684 30 100.0 38 .............................. TGATAGACTTTATCCCAACCGAACAAGCTGGAACGAGT 4752 30 100.0 37 .............................. ATATCAGGGTCTAAGAAAGTCATTTTCATCACCTGTG 4819 30 100.0 37 .............................. CGAAAGAGAAATCAGTAATTTTACCTATTTCTACCGG 4886 30 100.0 36 .............................. TGGGTTACTGCGGTTACTCTTCACTCGGTGCTTCGT 4952 30 100.0 36 .............................. GCTTAAGCCCGTCAGTTGCCTGACCCGTTCGATTTC 5018 30 96.7 37 .....G........................ ATCATAATCCTTTCAGCTGTTTCGCCTTCACCTATTG 5085 30 100.0 36 .............................. TAGTTCAACCATGGCATTGAAAACGCTGCGAAGTAT 5151 30 100.0 36 .............................. TGGCGTGCCTCACTCCCTCGTAACTCCTTCCCGTCC 5217 30 100.0 36 .............................. AACGCCCCGTAATATTGTATTTGAACTCGGCTTCCG 5283 30 100.0 37 .............................. TATACGTACACACACAGTATACCGTCGGGTAATGTAG 5350 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : CCCCCTCATCG # Right flank : CTCAAATCTTCCTGTTGAGCTCTTCCCCCGTCATGGCTACCCTTTACGGACTTCTGGCTACCTTATTTGGCATAATTAACGTGCTTTTTGCAGTAGGTATCTTTGGCATGTTAATGGGAATTCCATCTTTCTTCGTAATCAAGAAATTCAAAGGAATGAAAGAAGAGGATGTACAAAAATTTATTGCCTGATTTGAAAGAAAATGGAAAACTTTTTTCATTATCTAGAAGTTTAAGTATAAAATCATGATTTTTAAAGTGGCTGAGGATGATGAGATAAAAGTCGCTTTTCGTGAAGAGTAGTATAAGTAGTCTTGTTATAAAATTTTGTTAACAATAAATAAGGGAATAATTCTTAGACCTAGGCTAAAATAGCTAGGTCAACACCCTCGGTAATGGGTGAACTCAAGACATTATGGAGAGTAAACCTCTGTGCTTCTGTTAATGGGTATCAAAGAACGGTTTCTTCCCCAGAACGTCCCTCATAAGTGAAGGGTAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 332-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000046.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 331 30 100.0 37 .............................. TACGGGTCACGAATGAGGGCTTAACCCTCTCTCGTAT 264 30 100.0 37 .............................. TAAATGACCTTCGATAACTCTAGGTAGGTGCAAAAAA 197 30 100.0 37 .............................. TCAAGGTTTCTATGTCATATTTCTGTGTCACGTTGTG 130 30 100.0 34 .............................. GAAAAAAAACCTCTCTTTCTTCCCCCCCCTCATC 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : TATATAATAATGAATATTATATATAATGAATATTCAAGATCACGCAAGAAATTAAAGAAGTTGAATCAGGGTTCGATATAAGTATGAATCACCGTTGAGTTATGTCAAGGATTACAGACTATGGAAGAAAAGCGGATACATGGCGTTAATACTTCATCTTAAAACTGCAATTAAGTGTACGTATTTCGTCTTTTTTGATCTCCTTTATTAATCTAACAGCCCTTCTTCTTATATCCAATTTGTTGGTAATGTCGGTTGCAACTCTTGTCAATTCATGACTCTCCATAAGTCCGATTTAAAAAATCTTAAAAAAGTATTATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAATTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATATTAAGCAGG # Right flank : CCCCTGCTTCCCGAATACTAGGCTGAGATAAAGCCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1381-1870 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000052.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1381 29 96.6 38 .....................A....... GTCGTTTTTGTTTCGTTTTCGTATTTCTGTACCATAGT 1448 29 96.6 37 .....................A....... GGGTAAATATGAGGACGTGGTTTTCATAGTTCTGTAT 1514 29 100.0 37 ............................. GGGTACGTGACAGGCAAATACCCTCGTGGGTATTTGC 1580 29 100.0 36 ............................. GTCAGTAACAAGGAGGCTGACATCGGCATTATTCGT 1645 29 100.0 37 ............................. CAAATCGAGTTCTCTTCACCTCCTTCTCTTTCCCCCA 1711 29 96.6 36 ........A.................... CTAATAGCACTAACGATATCAACGAAGCTAATATAT 1776 29 96.6 37 ........A.................... CTCACATATATGATTGCAGACGTTATGGCAGTATGTG 1842 29 82.8 0 ........A.............C.C..TT | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 96.1 37 GTTTGTAGCAATCCTTAGAGGGTTTGAAA # Left flank : AGCGCTGCGTATCCTCTATCCTTCTTGTTAAAATCGAAACACTTCCTAATTAATCCAGCTTCTATAAGTCTATCTAAGATCCTGGAAAGCGTCTGAGAGTGTAACCCGGTGGCGTCTTCAATTTCACTGAACTTAACACAGGAACCCCGAGTCATTATTTCTTTTAGAACCCTGACTATCCTTTCATTTTTGAATAATGGGTTCTTTCATTTTTGAATAATGGGTTCTTTTTATCATTTCTTTTCATAAAATATAAAATAGAGGACGAGATATATATATTTTTTAAATATCTTGACTCACTAATGACGTGAGTAAGTTCTATTGATATAAATTCTTTATATTTAGGTACCATGGCTTAGTCCAAAATTTTTAAATGAAACGGTAAGTTCTAGCGTTATTTAAATCTAGGAAGCGATAGGAAGATATCATTTTTTTAGAAAATTTTTCAATGAAGCTATATAACACTTTTACAGGATAAACACGAATTTTCAGGGGAGCTC # Right flank : TTGTTCCGTGTATTTGAAGTAACCAGGGTTCCCACCACCTGCAGCGCCAGGAGTCTTTATTGGCATAAATACAGCAGCGTGAGTTAACCCCCCATGACCCCGACTAAGACAAACACTAATAAGAATAAGGAAAAGAAGATGGTCCTCTTCATGAGATGAAGAAAAACGCATCACGTTTATATGTGAGAACTAATGAAAAGGATTTACTTTTTCTTGACCTTCAATTAGTCTTCATCAGGTTTATGTACTTTAAAATGGCTTTCCTCTTCTGACCCAAATTCGTAATTATACCACTTCCTGTAAAGCGCTTTTAGACCGTAGTAGAGATCCTTATAGTTACGGATCTTGTAATTAGAGATCTTCTTGTAAAAGGAGGCAAGAAGAGTCCCAAACAAAATCGCAAATCCCGCTATCAGGCTTCAGGCCACAGACTAGCATACCAAGGTGGTGGGATATATTTAGACTGCGTGATACACCCTGTTGGTGGTATTACACCAAAT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCAATCCTTAGAGGGTTTGAAA # Alternate repeat : GTTTGTAGCAATCCTTAGAGGATTTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 544-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000063.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 543 30 100.0 41 .............................. CAAACGATATGTTTACCGAGGCTGGTATCTATGTTAAAGAT 472 30 100.0 39 .............................. ACAATGACAAGACAAAAGAGAGGATTGTCTCTCTCTCTT 403 30 100.0 38 .............................. TCTTAGCCCGTCTGCTACATCTCCTAACACATCTCCTA 335 30 100.0 37 .............................. AACAAGAGTACAAATATACAGTAATTGGAATGAGTGG 268 30 100.0 38 .............................. TAGTAGTATGCCCCTGCTCCTACAGCTAAGCCGATTCC 200 30 100.0 37 .............................. TATGTCATGCCTAGCGGTATCGGGACTTTAGACACCT 133 30 100.0 37 .............................. CTGGTACACAGACATACAGAAGACGTTTTTCAAAATT 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 100.0 38 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : AGAGGTAATAGTTAGTTTGTGCCATTGCTGACTCCACATGTCTCGAGGATGACTTGATCTCAACTACAGTCCTGTCCTCCTTCCTAAACGCGTCTATCTTCATTCCATCTAGGGAGATCGGTAGTTCGTCTCCATATATCTGATGTATCGCTCTGCCCTTCTCTAACTTCGAATGTCCCTCGAATGGAGTGACGTGTCTAGCCATGTACCAGACTTCACGGGGGCAAACCTTTGAGTACCAGATCAAGGTACCCGTGATCACAACGTCCGGTCTCAGGTAAATCGACATAAAGAATAGTTGATTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAGAATTAAGCAGG # Right flank : CAGTAACCCTAAACAGGTGGATAGAAAAGAGTATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 4398-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000009.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4397 30 100.0 38 .............................. ACGACTATGTTTCAATCAGTGGTTTCAGTGACGCTGAG 4329 30 100.0 38 .............................. CTTGCTCCACGCCCTGGAAGGGCGAGGCTTTCAGTTCA 4261 30 100.0 36 .............................. TCAATGACAGTTCTAACAAAGTACATGACACGATTT 4195 30 100.0 36 .............................. ATGATCCCGACAACGGACAATACCCCCAGTCCCCTC 4129 30 100.0 36 .............................. TCATCTCAAAGACAAGATAGAAATAATATCAAATAA 4063 30 100.0 37 .............................. TAAAGGCGGGAACGTGGTTCCTGAGGAAGAGATAATG 3996 30 100.0 35 .............................. ATAGGATGGCGGGTAATTAAACACGCCATTTAGTA 3931 30 100.0 34 .............................. CTAGTCGGATCTCTATTCGAAATTGTGATTGCCA 3867 30 100.0 36 .............................. AACGTTATGACCCTCACTGACCTGCCACCTCGTTCC 3801 30 100.0 35 .............................. TGGTGTGAATGTCTATGGCCCTCTCGAGCCTGAGG 3736 30 100.0 36 .............................. ATGTTTCACTCATCCACCTCACCCTCCTCATAGTCG 3670 30 100.0 38 .............................. TAACTTTTTCAAAAATAAATTCGTAGCTCTTATGTCTG 3602 30 100.0 35 .............................. CATTTCCAGAAGCACGATTTATTCAACTTATTTTA 3537 30 100.0 37 .............................. GAAAAAGCAGGGTTGAAGGTGAAGGACGTAATGTTCT 3470 30 100.0 38 .............................. CCTTTTCGAATACCTTTTCGAAATCGCATGTCATATGA 3402 30 100.0 37 .............................. GAATAAGAAAAGGAGGGAATGTTTGCATCCATAGTGC 3335 30 100.0 37 .............................. AGGTAAAAGCTAACTTCGTTTCACCTGCAACTTTCAC 3268 30 100.0 37 .............................. AGACAGGAGAAAGGAGAAGAAACGCATTCGTGGAATG 3201 30 100.0 36 .............................. CTTATTATTTCTGCTCATTTTTGCACCTACCAATAC 3135 30 100.0 37 .............................. TAGAGAGGACGACGACCATACCGTGAACGAATGCTAT 3068 30 100.0 37 .............................. ACAATATAACCTTCTTCTTCGGGATCTGTCCCGAAGC 3001 30 100.0 38 .............................. TATACTAGTGTGAGAAACTAGTAGATAGGTGAAAAAAG 2933 30 100.0 35 .............................. AGTATGTCTTCAACGGCGATCATTCTGACACATAT 2868 30 100.0 35 .............................. CACCTACCAATACTTATCGAGGTCATTTATAAATA 2803 30 100.0 36 .............................. TTCTAAAAAAGTAAGGATTTATTTCGTTCTCATGTT 2737 30 100.0 36 .............................. CTTTCATAAGTACTGCTAGTCATGGATTCGCTCTCA 2671 30 100.0 37 .............................. CTATTTCCTCATCACTAACGTCTTTATTCAATTCGAT 2604 30 100.0 36 .............................. TTTTTCTCATAGTTCGGTACCGAATTTCTTTTTCTA 2538 30 100.0 37 .............................. ATCGAAAGGATTAGTGAATTCAACGGCATTAAAAGAG 2471 30 100.0 36 .............................. CAGCATAGTGGTACCTAAAAAATGGGGGGACTCCGT 2405 30 100.0 35 .............................. GAGAAGAACATAGATTCGATAAGACAAAAATGGGA 2340 30 100.0 37 .............................. ATGAACCTCACCCGGTGTCTTAAACTGACTCTCGTAT 2273 30 100.0 35 .............................. CTTACCAAAGTGAAAGTAGTTCCGGTTCATGTGGT 2208 30 100.0 36 .............................. TCTTCGTATTCGCGCCATTTCCTGAATATTATTTCG 2142 30 100.0 36 .............................. AATCTACTCCGTCGCCATGTTCACGGTGAAGTACAA 2076 30 100.0 37 .............................. ATACTAACATAGGTTCTGCTAATTTCAATAATGGAGC 2009 30 100.0 37 .............................. TTACATTGCTTGGGCCGTTTGTACTATCGATTAAAGC 1942 30 100.0 36 .............................. AAATACCAAGGTATCTCATGCCCTCTCACTTTACTG 1876 30 100.0 36 .............................. CCAAGAATATACATAGTAGATATAGCTGTAATACCA 1810 30 100.0 37 .............................. GGGCTAATGCAAAGTAAGGAATATAGTAAAGCGGAAT 1743 30 100.0 38 .............................. TGTGCAAGATGTTTCATAAAGGCGAACAGCCAGGAGAT 1675 30 100.0 36 .............................. GTAGAGAGCTGAAGCAAAAATATCCAGACAGGGCAT 1609 30 100.0 36 .............................. ATTTTTTAACGCCTAATTCCTCATGAGGAAGTATCT 1543 30 100.0 38 .............................. AAAGATCTGGAAACAATAAGTCCAAATTGATGCCATAC 1475 30 100.0 38 .............................. CATTTCACTGACTTCGTTGCCCGCACTCTTACCCACGT 1407 30 100.0 38 .............................. ATCTCGATCAGGGCGATCCAACGTTTCAGCCTCGGGTA 1339 30 100.0 38 .............................. AAAGGAATGGAGCAAGACGTTATAGAAGAATTACACTT 1271 30 100.0 38 .............................. TTCTTTTCCCCCTCCTCCATCATGGCAGTTAGCCACGT 1203 30 100.0 37 .............................. CAAGAGACAATTAGTATACGTAATAAACAGTTCTTCG 1136 30 100.0 40 .............................. CAAACAAGGGCTCACTCTCACGTGAATGTACGTAGGACTA 1066 30 100.0 38 .............................. GCTCTGAGACAGCGTAAGAAGAGAGAGGAACAAAGCCA 998 30 100.0 36 .............................. GTTGTCGTATTCTTTCTATTTCTGAAACTAACTTCT 932 30 100.0 37 .............................. ATTGCGTTCTCAACTAGTTCTTTTTGCCATTTGGAGA 865 30 100.0 35 .............................. ATGAGAAATTAACGCCGGAGTGTGTAGAAGATGCA 800 30 100.0 38 .............................. TAATCTTCAATCAGGGACGAATAAGATTCCGGTGATAG 732 30 100.0 34 .............................. AATGTACAAGCCAGAAAAGTCTAACGGTACTTAT 668 30 100.0 37 .............................. AATGCTTTTCTCCTACTTTTTCATATGCTAACAACAC 601 30 100.0 38 .............................. AGGATGAGAACGGAGAGCTAAGGAGAGACAGGGAGGAG 533 30 100.0 36 .............................. TTTCTGGGTCAACCAAGAACCCCTCATTGTTCACTA 467 30 100.0 36 .............................. ACTTCGTACTTTAGTTGTTACGCCAATTTTCTTCTT 401 30 100.0 40 .............................. ACCTAACTGGTCTATGTTGCCTTCGATGTCCTTTGAAATC 331 30 100.0 35 .............................. CATGAGGGCTTTAATCTTCTCAGCGTTACGCCCAC 266 30 100.0 36 .............................. ATGAAATCATCTAGATCGTTTTTTTCTGACAATTTA 200 30 100.0 39 .............................. CTCTGATAGCGTTTATATTATTCTCGTTTTTCTCATTTT 131 30 100.0 37 .............................. CCTCAGAATAAAAGTCTAAAACCTATTTCTAATACTA 64 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 66 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : ATTTAATAATGAGAGGATAGAGATTAAATAATTAGCTATAGATCCGAAGTCTTCCTCAATGCTAAATAGATAAAATTTATTTTATAACACTACTAGATGAAAATATTTAAGCCACAGGAATTCCCGTAAACTGCCTTCCTAGTTCAGGGAAGCTGTTAAGTCATTTAGAAAGATGGGACATGACACTAAATAACCGAAATTGAACAACCTCATTCCCAAGGGCGTGATAGTTCAATAAACCTCTCTTTTAGAGGAAATTATAAATTAATAAAGTTAAAAGAGATGTTGTAATTATGTATTTATGCATCTTTATTGTTTATTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGGGTTTTTACATAATATTAAGCAGG # Right flank : CTACGGCACTTGAAACGGCAATTTATCCTTTAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 3008-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000010.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3007 30 100.0 37 .............................. GTAGGGATGGATCCAGAGAATGGATATGTGGAAGGCG 2940 30 100.0 38 .............................. CTTCATTTATGCTGTGGGACTTCTTTGACAGAAAGTAA 2872 30 100.0 35 .............................. TGTCAATGATTTGGGGCTTCATGCCCCTTGTCAAG 2807 30 100.0 37 .............................. TAGTTCCCGAAAAAGGGGTACACTGTTTTCGCTTTCC 2740 30 100.0 37 .............................. AAAGAGCTAAGAATAAAAGAGATTAAGCTTTTCTTGA 2673 30 100.0 38 .............................. TTCCGTCTTCTTCTCTAAGGATCATCAATATTTTCCCA 2605 30 100.0 36 .............................. CTTTTTCTCTTGTTTCGCTTTTTCTATCTTCTCTTG 2539 30 100.0 35 .............................. CTAACATCGTTTTCGCGGTTCCGGGCGGGCCGATA 2474 30 100.0 37 .............................. GGAAAAACGTCCACAAATTCATTCAATCCTGCAGATT 2407 30 100.0 36 .............................. AGAACTAGGTGCAAAGTAATACCCAGCAAAGCCTGG 2341 30 100.0 36 .............................. TGAAAGTCAGGTAGTAGACCTGGTAAATTCTGTATT 2275 30 100.0 36 .............................. GATAGAAGTTGTAAGGTTTGTTCCTCAATGACGACG 2209 30 100.0 37 .............................. AGCCATTTCGTTATCTTATCCAGCCCGCTTATTGTAG 2142 30 100.0 38 .............................. AAGATCTTAGACGGCGAGCCCGAAAAGGCTGGAGCTCT 2074 30 100.0 36 .............................. CATGGTGAATTAGATGGTTGGTAGAGAGATCATCAT 2008 30 100.0 39 .............................. TGTCTTCTACAATTATGTCGTTGTACTCACTTATCTCCT 1939 30 100.0 40 .............................. CTAACACAAACGCCTAAGTTCCAAAACGTGTCCATTACGG 1869 30 100.0 36 .............................. TTCAAAATTTGAGGGAGAAAAAGAGAGAGATGTGAC 1803 30 100.0 38 .............................. TGAAATAACTACTAGTGACATGTACCAATTACAACTTA 1735 30 100.0 37 .............................. TATATACCGAGGTCGGAAAGGGATAACGTAATTAAAG 1668 30 100.0 37 .............................. GCCGAAGGCACCATCATTACAAGTGAAAAAGAGTTAG 1601 30 100.0 37 .............................. TCTTTTGTTCATGATAAACCCGACGTGCCCATTTTCG 1534 30 100.0 36 .............................. CAAAGTCCTCGTTAATTTTTTTGTCTAACTCTTCCC 1468 30 100.0 37 .............................. GAATCCCTTGTCCCCTGCCTGGGCTGTTCGTCAGAAA 1401 30 100.0 34 .............................. CGGGGTAGACACATCAAAAATCGGTATCAATGAG 1337 30 100.0 38 .............................. TGTTCAAGTGCCAAAGCGCTCATCGTTTTCCCACCCGT 1269 30 100.0 38 .............................. CTTCTCTCATTACCTCATTTATATCGCATACCATACTA 1201 30 100.0 36 .............................. CGGGACTGGAATAATTCTAGCTAGTCAGCGAATTTA 1135 30 100.0 37 .............................. TGAACGCTGAAATACAAAAAAAGTTAGATAAGATGCA 1068 30 100.0 37 .............................. AACACTTCCCAAGCTCTCTTGTTGAATGAGGATTTCA 1001 30 100.0 39 .............................. GACGGGGGGAAAAGTATAGATCGTGATATAGAAATTGGA 932 30 100.0 38 .............................. TCTGTCAATCAATGGGAGACAAAACCCGCACTGGGCGA 864 30 100.0 35 .............................. AGGGGTGTCTAGAATGAGGGTCATCACGTTTAAAG 799 30 100.0 38 .............................. TTCCTTGATTCCGAACACGACATCCCCGCTGATATCTA 731 30 100.0 36 .............................. CGCAATATACCGGATCCTTTTAAGAAATCTAGCGAA 665 30 100.0 37 .............................. TAGGTCATCCCAGTATACTTCTTCCCTCTCTTGTCCA 598 30 100.0 37 .............................. TACGACAATGATATCTCCACACATATTGTCATTATCT 531 30 100.0 36 .............................. AACACCGTAAGCGGGAAAGCATATTACTCAACTATT 465 30 100.0 35 .............................. TCGATGACGCAATAGAGGAAATGGAAGAAGATCAA 400 30 100.0 39 .............................. TATTGAATGAAGCACCTGTAAAAGCGTCATACGTTCCAT 331 30 100.0 36 .............................. TCTTCTACGCGTTCCTGTGCTAATTTGCTATCTACA 265 30 100.0 37 .............................. CTTCATGTCCCACGGCGGATATAAACCCGCCTGATAG 198 30 100.0 36 .............................. GAGGGGATAAAATGGGAAAAACGTATCTCGTCAACG 132 30 100.0 37 .............................. AAAAACTAGGGAAAAAGTTGAATGTCTTTTTAGTTGA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 45 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : CTGAAGACAGTTTCAGACTTTTCACGAGCTCGGGGTTAAGAACTGAGGAGAGAGAACGACGAGATTACTAGTTGAGGACAGAGACGGAAATGCAGGTAGGCCGGACTGAGGTATTTTCGCTGCTTATATATCTAATCCCTTTAAGTATGTATGTGTTCTCACGACATAGAGAACCTCGATCTGAACAACGAACTTGATTTTGGATTTACGTATAGAAGTGGAGTTGAACTCTTTACATATCAGCCTTGCTTCTCCATTATTTTATATATTGGATTTATAAAAGGATAATGTATCACCAATTTTTTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATGTTAAGCAGG # Right flank : CGGTAAAACGCTATAGACCTCCGCTGACGCCACCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 35573-37318 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000007.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 35573 25 100.0 43 ......................... ATATATAAATTCCATTGTTATTAACAAGTTAGTATTACATATG 35641 25 100.0 39 ......................... TGTATTTATCCCCTTCTTGCAAGGGGATTATTGCCGTGT 35705 25 100.0 39 ......................... AGTCAATAAATATAAGGAAACGCTTAACGAAGTCAATAA 35769 25 100.0 39 ......................... TCTATTATCTTTACTTCCTCCCCTGGCGTCATGTTCGCT 35833 25 100.0 40 ......................... AACACCGTGGACACGCCATCACCATGTTCACGATGAAAAA 35898 25 100.0 34 ......................... GTAATAGGCATAGGTGAGTGACATGATAAAACCA 35957 25 100.0 39 ......................... TTTCTTAAAAAGTGACGATGAAAAGATAATATTTGCCAC 36021 25 100.0 37 ......................... AGATGTACTATCCTTCACAGTGCCGTTAACTAATAAG 36083 25 100.0 40 ......................... ATACATTACTTGAATCTATATCGAATTATGTAACAAATAT 36148 25 100.0 42 ......................... GTTGCTCTATCATCATAAACCCTTTATCCGATATCCTAGTAG 36215 24 96.0 39 ......-.................. GAAAGGTCTCTAGTCATTTTAGGGGCTAGAGGAGACGCT 36278 25 100.0 35 ......................... TGACATATCTAGTTCAAGTTGAACACTGCATTTCT 36338 25 100.0 37 ......................... TCCAGTTTATCGTTATAATTTAGAACCATCATTAAAG 36400 25 100.0 38 ......................... GTTTAGTCTCATTACCTCTAGTTTCTACCCTTATTTTC 36463 25 100.0 36 ......................... GAAGCTTTAACCGGAAAGCTCAAATACTCTAGCGTA 36524 25 100.0 40 ......................... ATGTTTACCCAAAATGAAAGAGAAAACCGACACGATACCT 36589 25 100.0 40 ......................... ATAGGAAAGAGAAAACACCTAAACCAAGTTGTTTAAATAC 36654 25 100.0 41 ......................... CAAAACTACAGCGTCAACATACCTCAGGATCTGCAACTCCT 36720 25 100.0 36 ......................... TTATCTCTCGTCCTAAACCTCCAAATAACGCTTCGT 36781 25 100.0 38 ......................... TATACTCCCCTCATTCCATGTATCCCGCATGTTTCTTT 36844 25 100.0 40 ......................... ATAATTACAGGTCTTGAAGTCGCTAGTTGTTTGACGGCTT 36909 25 96.0 39 ..........G.............. TCGCTAATTCGTTAATAGCATCTTGCAATTCTTTTTCAT 36973 25 96.0 40 ..........G.............. GTACCTTTGAATCCATGTCAGCCTTGACTTGGGTAATTAT 37038 25 100.0 39 ......................... ATTCTTACCACACAGTATACCCTTGTATCGTGCTTGTAT 37102 25 96.0 39 ..........G.............. TATTTCGAGAGTGCCATGCTTGTCATACGAAAGGAAATT 37166 25 96.0 41 ..........G.............. CTTGTGATGCCAAGCCCTCTTCCCTCGAGGGTCACTTCCAG 37232 25 96.0 37 ..........G.............. AACTCTGGGTCGTCTGTCTCGTTGATACATACGTCAT 37294 25 88.0 0 ..........G...A.........A | ========== ====== ====== ====== ========================= =========================================== ================== 28 25 98.7 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : CTTTCTTCGGTCCTTAATCGTTTAAGAAGTCCGCTCAATATTACGTGTTAGGTGTTCTCCTATGACCAATTCTTTGAGAAGAGCGTTACGAGAGTGAACTATTATTTTATGAAAGTATAGGAAAAAGAGTTAAGATTAACATAGTATACTATTTAAAAATATTGCTAGAACTTTATTATATAAAATGAATATAGAAAAGAGGAAATTCCCATGACTGAAATCTCGAATGAATTTTTTCCTTTTCCTGAACTTTCAGATCCGGTTTATTCATAGAATTAATAAACGAGGAAGTTCGAGTCTCCTTGCGACCAAAACGAAATCATTTCGTGAGTTTTACATTTATAAATAGGTGGATGTCTTTCAATTAGTGAAAAACATCATGCGACCGGCGTAGGACGTCTTGAGGGGAGGGGGAAAGGTCGGATGGAGAGTGGACGGAGGAGACGTAAAGTTTATAGGGGGAAAGGAGAAGATAATTGTAGAAGTAAATAAAACATTCA # Right flank : AAAATTTGGAGTAACGTTACTGATTTTATTAAAAAGACTAGTTGAACCTAGAAAGAGGTGAGGCTGTCTCGTTTTCAGGAACGCGACCTTAGCCAGTTCCATCTTAATAGGTGCTGATAGGTAAGTCGTTCTGAAACGTAAAGGTTCTCTGCTGTCAGGCAAGACTCTATTTAGGAAATATTTACCCTAAATACCTCTGTTCCCCGTTAATGGCTTGCCGGGGATACTGACGTGGATGTAACCCAGAGAGACAAGTACGTTTTCCGAGGACAGCGCCCAGACGAGCTTAAAAGTCGTTGAACAGAGAATATTTCATGGCAACTCTACCACTTCAGGACGTGATAGGGGTAGTTCTAATAATAATCGTCTCGTCTATCTCGTTATACCTTTCTGTCCAGTTGATTAAGGAGTTGAAGGGGGACTGGAAGTCAAGGGTGAACAGTGAGCCAAACGAGAGGGTCTGGTTGCTACTGGAATAGTCTAGCAGTAGGGTAGGGGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 49716-48857 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCL01000007.1 Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 49715 24 96.0 40 ........-................ ACCTAGACAAGAGCTTAGCCGTCATATATGCACTCGTCTC 49651 25 100.0 38 ......................... TGATGAGTGCAATTTCAAAAATGAGTAGAGAGGAGTAG 49588 25 100.0 40 ......................... ATAACAACGAAGTACCCAGACTTTTCAATATATTATTTAG 49523 25 100.0 41 ......................... TAATGAAACTAATAACTGGAAGAGTAGGTTCTGGAAAAACC 49457 25 100.0 40 ......................... TGTAATACCCCGTTTTTGAATGACGTCTCTACTTCCGCTA 49392 25 100.0 35 ......................... CTACTTTGTGCCATACGATAAGTTCATGTCATTAG 49332 25 100.0 39 ......................... GATAAGTCTTACTATAACAGAGGTTTTCCACATACGTAT 49268 25 100.0 42 ......................... CCACTACTATCGGATCAAATAATAAAAAAGGATCCGAAATGT 49201 25 100.0 36 ......................... AGTTTGTATAACTGCTGTCTGTATATTTCTTCACTA 49140 25 100.0 40 ......................... ATGGGTATGCTCAATTGGGCTTCAACATCGAAGAGCCTTG 49075 25 96.0 41 ..........G.............. TGCTCATGGGCGGGGAGGTTTGCGAGAAAATTGATGAAAAC 49009 25 96.0 38 .................T....... GAATAGTGTAAATTATAAACGCTACTGTATCGCTCCCT 48946 25 88.0 40 .........TC......T....... AAACGGAGTTCTTCGAGGCTTTGGCTAGAGTTGGTTTAGG 48881 25 80.0 0 ...A...T.TC....A......... | ========== ====== ====== ====== ========================= ========================================== ================== 14 25 96.9 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : GTAAGGAGTGGGCCTAAGAGGTCAACGCTGAGTATTTCCTTGTCATTTCAGCGCACGAAGTACAATTGGAGTGTTCCATGCGGAATTTAATGGACTTCTATATATATGTATATACTATGCAATTTAATTTAGTTTCTGACTATATTTTTTATATATAGAATATATCTCTTTTAGATTTTTTTATAAGAATTTCAAAAAAGAACTAAATTCCATCTCTAAAAACGAACCGTTCTGATTATTCTATATAACCTATTTTCTCGAGTTTCTTACAGAGTTAATAAATGATGGAGTTCGAGTCTCCTTGCGACCAAAACGAAATCATTTCAAGAGTTTTACATTTATAAATAGGTGAGTGTCTTTCAACTAGTGAAAAACATCATGCGACCAGCGTAGGACGTCTTGAGGGGAGGGGGAAAGGTCGGATGGAGAGTGGACGGAGGAGACGTAAAGTTTATAGGGGGGAAAGGAGAAATTATTGGTAGAAGTAAATAAAACATTCA # Right flank : TAAAACATGTTTATTCCAACTTGTATCTGATTTCCCCTCTCCGTTTAACCTAGAAATGAGAAAGTCTGTTTCCGACTGGTTGTGAGCTTAACGTGGTTTGAATGGTTTAACTTGGAAGTGGATTGAGAACGGTTCTTAGAAAGATCTTAGGATGTTAGAATACCGTATGCTCAGTCTTTATAAAATTCTAATCAAAAAATTATTATAGTGTTTGCCATGCCTAAATCCATAAAAAATTTTTATATTTCTGGTATATTTATTCTGTTATCTACAACTCTTTCTCAAGAAACCGAAGTGAGAAGAGAAGAGTCCACTACTCACCCTGATGAAAGTCCGAGGTGGAGGCGATAACTCATGTACCTTGGAAACCCCTGTCCGCCAGGTTACATCAAGGTCGATATAGCTTACCCACCTTACTATGTCTGTTTCCCGATCTCTCAGGGGAATAGAGTGCGAGGGACCTCTCCCGTACAGCCACAAGCGAACCGGTGCATGGAGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //