Array 1 1894895-1894067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050959.1 Streptococcus gallolyticus strain FDAARGOS_666 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1894894 36 100.0 30 .................................... TTACTTTTTAGGTAAAATTACGTGGTCACG 1894828 36 100.0 30 .................................... AACAGTAAATGATTATCTAGCTTATGTAGA 1894762 36 100.0 30 .................................... GGTCTCAGGAAAATATATGTATGGAATGCA 1894696 36 100.0 30 .................................... CGTTGTAAAAGTAAAGTGTGCCTTCGTTCC 1894630 36 100.0 30 .................................... CTAAAAGTTGGTGGTCTGAACTTTGGTCTA 1894564 36 100.0 30 .................................... TAGGGGCGTAAATCGTCACTACGAGCCCAC 1894498 36 100.0 30 .................................... GACTGGTGTCAGAGGTGAAGTGGACGAACA 1894432 36 100.0 30 .................................... TCTTCAAACGTCATATCAATACCATTTGGT 1894366 36 100.0 30 .................................... AAATCGGAGTGTATGAAAATTACTACGATT 1894300 36 100.0 30 .................................... ATGCACGATTACTATCTTTCTATCTATATT 1894234 36 100.0 30 .................................... AAGCCATATGTTGAATAAGCATGCGCAACG 1894168 36 100.0 30 .................................... CAATTTATCATCTAACGTTAAGAAGCTCAA 1894102 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGAGAATAAATAAAAGGAATTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TCATTCCTCCTAATTAGAGGTAGACCGTGTAGTTTTATAGCTGTGCTGTTTATTTTACCATCTTATGATGCTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACACATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1896827-1895536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050959.1 Streptococcus gallolyticus strain FDAARGOS_666 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1896826 36 100.0 30 .................................... TGGGCAATATCTACGAAAATCCAGAGCTTT 1896760 36 100.0 31 .................................... GAATGTTCCAACGAGCATGACACCAAGCCTG 1896693 36 100.0 30 .................................... CCCATACAGTTTGATGATTGATTCTAGTGC 1896627 36 100.0 30 .................................... CCGTTTGATGTGTTAGAAAGTTTCATTGAG 1896561 36 100.0 30 .................................... TTGAGAAAAAACATGGTATGCACGGAACAA 1896495 36 100.0 30 .................................... GACGGAATAAGTGAACCAACTTACTATGTT 1896429 36 100.0 30 .................................... AAGCTTTAAAGTGGGTTCTTGAAAACGAGG 1896363 36 100.0 30 .................................... AACAATTGTGCCACTGCACAATAAAGACCT 1896297 36 100.0 30 .................................... AGGCGTTAACGCTAGCTTATTTAGCGGTCT 1896231 36 97.2 30 .................C.................. CACAACCGGATAAGTGCCAGCTGGAATTGC 1896165 36 100.0 30 .................................... TATTGTAAAAGTAGTCTCTTGTAATGTTTG 1896099 36 100.0 30 .................................... ACACGTTGTGGCGAATAGAATACGAACTAA 1896033 36 100.0 30 .................................... TTGTTCTGTCATATTCTCACCCCCTTTCTA 1895967 36 100.0 30 .................................... TATCGTAAACGAAAACATGACTGTCATTGA 1895901 36 100.0 30 .................................... GTTGACTGGTGGCGAGATTACGAACGCACT 1895835 36 100.0 30 .................................... TGTCCACAAATACATACCTTTAACTAAAAC 1895769 36 100.0 30 .................................... AAACATTTCTGGCGTATAGTTCAGCTCCTT 1895703 36 100.0 30 .................................... GCACACAATTTCAGTTGTAGCTAATTTTGT 1895637 36 100.0 30 .................................... ATTTGCTTTTACAACATTAGCGCTGTAAAC 1895571 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATATAGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATTTAGATGAAGGGTTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGTTGGTTTTATTACTTTAATTCAAGCAGCCCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTCGCTGATCGAGAATATGTTAATTATTCAGAATGTTTGGCACAAGTTTTAGAGAAAAAATTAAAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTTAGGTATAATATAGTTAAAAATAATGAACTATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTTGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTGAGCAGAAATAGTATTCTCAGAAACGTACTAAATTTTAGTGAAAACGCCTTTCAACATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //