Array 1 348334-347879 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 348333 29 96.6 32 .C........................... TCGTCGGCGGCGACCTGGCGGCCCTCGTCTTC 348272 29 96.6 32 .C........................... TTCTCGACGCGGTACCACTCGGCCTCGGTCGC 348211 29 100.0 32 ............................. GGGGTTCTGCGGGGCGTCGCGATCGTCGGCCG 348150 29 100.0 32 ............................. GGCTGCTGCGGGCTGCCCTTGCCGTTCTTGGG 348089 29 100.0 32 ............................. ACCCAGCGTGCCGAATTCCGGGCGATCCGGCA 348028 29 100.0 32 ............................. ATCACTCAGAGTCATTTGGCGCGGGCCTGGTA 347967 29 96.6 32 .......................C..... CAGGGTGAAATCCCGCTGGCGGACACGGTCAT 347906 28 93.1 0 .C.......................-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 CTGCTCCCCGCGCCTGCGGGGCTGTTCCC # Left flank : GAGGTCATCTGGTGACAGTCATCGTCCTCACCAACTGCCCGGCCGGACTTCGTGGCTTCCTCACCCGGTGGCTCCTGGAGATATCCCCCGGCGTCTTCCTGGGCGCGCCCAGCGCCCGCGTCCGCGACATCCTGTGGGAAGAAGTCCGCCAATACGCCGGCCAGGGCCGCGCCCTGCTCGCCTACCAGAGCAACAACGAGCAGGGCTACACCTTCAGGACCCACGAGCACGCATGGCACCCCACCGATCACGAGGGCCTCACCCTCATCCACCGCCCCTCCCGCAAGCCTCCCGGCCGGACACAGCAGGAACCGACGGGCAGCCAGCGGACGCCGGGTTGGAGCAAGGCAGCGAAGCGAAGGAGATACGGCGGCAGGTGAGGAATCGCGAGCGGCATTTATGCTGCTATGGACGTTTCAAGCATAAGGAGAGCAATGCCAACTGTTGGCAAGGTAAGTAAAAACAGTCGCCCACGCAGATAAACCCGCAGATCAACTGCT # Right flank : AGATCGGGCAGTGGTCGCTCATCTTTGTCTGGTGCTCACGCACGCCTGTTCCCGATGCCGGGAGTCCTGTCACGGGCCGTCGAAAGAGGGCTGGCGGGACTGCGTGAGGCGCTGGCGCGAGAAGCGTCCGTGATTGGTCGCTTCCGTTGTGCGGCGGCTGTGGGCGGCTTACGTCTGTCTCTTATTCACCTTTGCAGCTGCCCACGCAGGGGGCAGGGTGGAGATGCGGGGGGGGTTGCTTGAGTCAAATCGAGAAGCAACTGGTTGATATCCAATAGATTAGTTTGAGTGTGCTGTGAGAGGGGTGGGTGTAGCATTATTTTTATTTTGGATAAAACGTGACCCAAAGAGACCTACACTATCCTCTTCGTCGGCAGCGTCATATGTTTATAAGAGACAGTGCGTGTCGCTCTTCCCGAGGTGAGTAGAGATTGGTATTGTTGTTCATGTCGGAGTTCTGGTTGGCCCCGGGCTTCGGCGCGAATCACGCACCCGGTCTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGCTGTTCCC # Alternate repeat : CCGCTCCCCGCGCCTGCGGGGCTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 350476-350748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 350476 29 100.0 32 ............................. GCGAAGGGCGTGAAGGGCCGCGTCGAGGTGCT 350537 29 100.0 32 ............................. ACGAACCCGCCGCCGTCGAACTCATCGGTGCC 350598 29 100.0 32 ............................. AGGTCGTCGGCGCCCAGCGGGCGGTTGGACCA 350659 29 100.0 32 ............................. GAGCTATGCGTCTCGCGGTACAGCCTGGCGTG 350720 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : ACGAATGCGTCCGCCTCAGCGGGAAGGGCATCCGCTGGGGCGGACGCCCACTCGCAATCGCAGTCTGAGCTTTGAGCGCCACTACCACCTTCGACCGGTACTTGGCCAGTTCCTTGGCGTCACCAGTCAGCCAGGCGTCCGCGATCACGTAAGCGGCCATGGGAGCCGACCCGATCCGGAAGCCGGGAGCCAGGGTCAGGACCTGCCAACCTGGCGGCCCTTTGGGGCCGGAGCACTGATTGTGCCGGTGCCGCCGGAACTCGGTGTGCTGAACGATGCCTCTGTCAGTGCTCCACATCGTGATCGCCGGCAAGGGGGCCGCGGCCACCGTAGCTCGTGCGCCGGGGATGATGAAGAGTCCGAGATACCGCAGCCTGGGAACCGGCTTCACTGTTCCCGCCCCGTCATCGTCCGGAATGGGTGTTTCGATGGTTAGGTCCGATCCTGTGGAAGTGCTCGAGAACATGGACCTCCCCGGATAAACACCCTGCTCATCGAGT # Right flank : CTTCCGGGAGTTCGTGGCGTCCGCGCGGGAGAAGGACTTTCCGCCCGCGCGGGGTGAGTGGGTCAAAGCCTGACAGTATTTGATTGATTCGCTCTTCACATCCACTGAAAGCGATCGTAATTGCCGCGCTAGCTCCTGTTTTCGGTGATCCTCTTACTCGTCCGCCCACTCCGTGTTGAATGAGTCCGTGAGTCACGAGGGGTCACCGGTGCGTGGTTTGGGCGAGCGGTTGGTCGGTGCTGTTCGGACGGTGTGGGCGAAGCATGACCGGGAGTCGGATGGGTGGCTGCCGCTGTGGCGGCATATGGCGGACAGTGCCGCCGTTGCTGGTCTGCTCTGGGACCATTGGGTGCCCCGCAACGTCAAGAATCTGATCGCTGGTCCGCTGCCGGGCAAGGTGGCTGACGCTCGTCGTCTCGCCGTGTGGCTTGCCGCTGTACACGATGTCGGGAAGGCGACGCCGGCCTTCGCCTGCCAGGTCGATGTACTGGCGGAGCAGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 360303-361003 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 360303 29 100.0 32 ............................. CGCGCGATCAGGCCCTTGATGAGCGTCCCGGC 360364 29 100.0 32 ............................. GGATGCCCGCACCAGTCGCACCGCAGCGGCAG 360425 29 100.0 32 ............................. GCCCTGTTCGGCATCGGCCTGTAGCTCACACG 360486 29 100.0 32 ............................. CGAACCGGCGCGAACGCCTCCGCCAGGCCGAT 360547 29 100.0 32 ............................. GAGACGGTCGTCCCGCTGGCGAACGGCGTCGG 360608 29 93.1 32 ...GC........................ TCAAGGAATACACCGCGAACTTCGATGAGAAG 360669 29 93.1 33 ...GC........................ AGCTCTCCCTGCTCTCCGCCCCCGGCCCGCCTC 360731 29 100.0 32 ............................. AGCTTGATCAGGCCGGGCAGGGCACAGATGGC 360792 29 100.0 32 ............................. TACATGGAGGCCCACGCGCGGCAGGCGGCCCG 360853 29 100.0 32 ............................. AGGAAGGAGGTGAAAGAACGATGGCAGACCGG 360914 29 100.0 32 ............................. GGCGGCGCCGAGTGCCTGTGGGTCGCCGCCCG 360975 29 89.7 0 ...GC...G.................... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.0 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCGGGTCACACTCCAGTCCGACCGCGACCAGCAACTGCCATCCGGCCGGAACTACGCGGACGGCGTGATCTGGTGACCATCATCGTCCTCACCAACTGCCCGCCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCGCCCGGAGTCTTCATCGGCGGCCCCTCCGCCCGCATCCGCGAGGTGCTGTGGACAGAGGTCAAGCAGTACGCCGGCCAGGGCCGCGCCCTGCTCGCCTACAGCGCGGCCAACGAGCAGGGCTTCGCCTTCGAGACCCACGACCACAAATGGCACCCTGTCGACCACGAAGGTCTCACCCTGATCCGCCGCCCCAAAGACCCGCCGACGGCTTCCACGACACGGCCCGCAGGCTGGAGCAAGGCATCCAAGCACCGCCGCTTCGGCAACCGATAGGCCCACGCCCCAAACGCCCGACTCGACGAAACCACTCCAAACCGCTCCCCAGCCCGAATGAACCCCCAGGTCACCGAGC # Right flank : CTCCCCCGCCAGGTGGCGGGTGTCATCGGTCGTGGCGGCGGTGGAGTCCTGTCACGGGCACAGGTCGTGTAGTTCTACCCGCTCGCATGAGGGGCAGGTCGTGGGGACCACTCAGGCCCAGAGCCACTCAAAGTGGGATTAAGAGGACGCTATGGATGCCATGTGGCCGCCGCTGCCGGCCGGGGTAACAGGTTTCCGGGAGGCCGGGGCTCCGGAGCTGCCCGAGACGGATCTTCGGCGTTTCACAGGTGCTTGCCACGCGGCGGCCCGGGCGGCTTCGCTCGACGTAAGAGAAGTGGCCGAGGCCAGGCCGTACACGACTTACTACACTGCGTCGCTGACCTCCGTACGGGGCGACCACATCATCGTCGTGTGTCATCGCCACGTGCCCTGGGTGGCGTTTGCCGCGCCCGACGATCGTGTCGCCCTGCGTGAGCGATTTCTGTCGCCTCCGCAGTGGGCGGATCAGTTCACCTGGGTCGGGTTCACCGTTCTCGCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 367612-365999 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 367611 29 100.0 37 ............................. ACGGCCGACACGTGGGTTGAGCTGCGCTGGTACGACG 367545 29 100.0 39 ............................. CTGGGCGAAGGCGGCGACCCACTGGCCGAGGGCGGCCCG 367477 29 100.0 34 ............................. CACTACGAGCACGACTCGGGCACGTCCCTCTCCT 367414 29 100.0 36 ............................. GTCGGCCTGCCGTACACACCTGGCGGGATGACCCAG 367349 29 100.0 36 ............................. GCCCCGGCGAGCACGTCCGCAGCGCGCTGTTCGGCC 367284 29 100.0 35 ............................. GCTGGGTGAGCCGGACGACATCGCCGAGGGGACGA 367220 29 100.0 37 ............................. CCGAGGGTGTTGCGGATGGTGCCGGGTGCGGCGTCGA 367154 29 100.0 39 ............................. CAGAACACCTGGACGGCTGATGGCCGCCTGGGGGCCGCA 367086 29 100.0 34 ............................. GGATAGGTGAGGACCCTCCCGGGTCCAACACCAA 367023 29 100.0 37 ............................. TGGAGCCGACGCCGACCGCCGGATGGACGACGGCCGA 366957 29 100.0 36 ............................. GGCTCTACGTCCTCGACCCCGAAGGCCACGTGTGGG 366892 29 100.0 36 ............................. AAGAACCGGGCGACCTCGGCGCGGTGGCGCAGCCGG 366827 29 96.6 37 .....................C....... GCGTCCACAACCTCGTCTTCGACTTCCCCAATTGGGG 366761 29 96.6 38 .....................C....... ATCACGTATGGCGCGTAGTAGGACGACGACAGGTGCAC 366694 29 96.6 37 .....................C....... GTGGCCACGAGGTGTGAGTCCCGGGGAGGGGATCCGT 366628 29 96.6 38 .....................C....... TACAGCGGCGCGAGGGAGAACGTGCACCGCGATTCCTC 366561 29 96.6 36 .....................C....... GGTTGCGCTGCCCCCGCTCAATCCGAGAGAGGTAGG 366496 29 96.6 38 .....................C....... CTGCCGCAGGGGCGACGAGCATGATCTCGCCCATGGCG 366429 29 96.6 36 .....................C....... GGTACGGGCACGTAGGCCACGTGGAGCTGACCAAGG 366364 29 96.6 39 .....................C....... ATCATGAGGGTGAGGCGCTCGTTCTCGTCGCGGGCGGCG 366296 29 96.6 38 .....................C....... GGATGCCGGACGCCGCCAGCAGCAGCGGCAGCCCGGCC 366229 29 96.6 38 .....................C....... TTGAGCAGCTCCGCCAGGTCTCCCTGCGTCAGGTTCCG 366162 29 96.6 40 .....................C....... GCTTCCCGCACGCCGAGGTCGCGCACGCCGTGGACCGCTT 366093 29 93.1 37 .........G...........C....... CGAGGACCAGGCCGACGACGTAGGTGACGGTGCTCAT 366027 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 25 29 98.2 37 GTCGTCATCAGCCCAGGTGGGTTCGCAAC # Left flank : GAGCAGTCAGTCCCAGCGGCCTCAGTTGATGCCCATTCCAACCTTCGTCGTGGAGCGCCCGGGCCAGAGCGGCGTCCTCACTTCCCAGCAACCCGTACACCACCGCCCGCGCCGGCCCGTGCACGTCCTCCCACCGCAAACTCGGCACGTCCGCCTCAACGTCCACCCTGACCCGCACGGCACCCCCAACTCGGAAGGACTCAGCGCCAGTTACCAACAGCGAGCTGTCCTCGCTCACCCAGGAACCCTAGCGGAACGAAAGAGAGGAAGAGGTCATCTCTGACCAAAGCCCACAAAAGGCTAGAATCTATGGTATAGGCCCAGGTGCCCAACTATCGGTCCGACCGAGCCCTAAGCTAAGCAGCGCCCACTGACAGCCACGCTGTGGTCACCTCGGTCCGAGCCTCTGACCTGCACCGCTGCACTATCGGAGGAACGCTGCAGATTCGCCGCCGAGAGGCCCCCCGACGGTGGTCCCTACCAGCGCCTTTACCATCGGG # Right flank : CGGTCCGGCAGGTCCAGGGAGTCGGTCAACCGGCCCGCGAAGTCGTACCGCTCATCCGCTCGGGCATCCGTCACCGCCACCGACCACGAGGATGGGGCTGTCACGTCGCGGCGGTGCCAGAACCTGGCGAACGAGAGCAGTTCGGACGTGCCGTCGATGACGTCCGTTATCGACGAGTATCGACGAGCCCACGGCGCGCGCAACATCCGCGGTGTCCGCACGAACACTTCGTCCTGCTGGACCGAGTCCACCTCGCCGTACGGTAAGTCCGGCTGGTAGATGTGCAGGAACTCGTCGCATCTCCCTTAGACATAGACGCCACCAACTGGTCAGCCTCCGGCAGTCAGGCGGCCCCTTTCCCCTGGGGCTGTCACACTCCGCCGGAACGGGTCGTCGTCCGCCGGTGTCCCTCAGCTCGGCCAGGGGGCCTCGATGTCGGCGGTGATCCGGATGCCCGAGGTGGAGCGGAATGTCGCCTTGCTGCCCTCCCAGGCATTGTC # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGTGGGTTCGCAAC # Alternate repeat : GTCGTCATCAGCCCAGGTGGGCTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 375377-377179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 375377 29 100.0 38 ............................. GCGAACCTAACGGGAACTCACCAGCTCGCTACGCGCGG 375444 29 100.0 33 ............................. GCGGTTGATGCGGTCGAGCAGCTTCATGATCCC 375506 29 100.0 35 ............................. TCCAGTTGCTCGGCCACGTACAGGACGGCCGGGAG 375570 29 100.0 34 ............................. CCAGGAACCCGCCCGCGAACGGCACGGGCAGCTC 375633 29 100.0 37 ............................. CTGTGCGGGCCGCTGTCGGCCCTGGGCGCGGTGGCGT 375699 29 100.0 36 ............................. TCTGGACCGAGCACGGCCACGGCCTGGCCATGGCCA 375764 29 100.0 37 ............................. TCGATCGTCGAGCGCCCGGTCTGCCCGGCCCGCTCGT 375830 29 100.0 38 ............................. TACTCCGAGGACATGATCCGGGTGGCCTTGTCCATCCC 375897 29 100.0 35 ............................. ACGTCTTCCAGTTCCAGCGCGGGACCGATGGTCAG 375961 29 100.0 36 ............................. AGATTCTTCAGCGAATCCGTGATCCGCTGGAAGGTG 376026 29 100.0 36 ............................. ATGACGCGGTCTACCCGTTCCTCGCCCGCAACAGGG 376091 29 100.0 36 ............................. ACGCCCTGTACGACGAGATCGTCCAGCACCTCGCGC 376156 29 100.0 39 ............................. ACGGCGTGCTGACCGAGCACGGCGGGACGTACAAGCCGG 376224 29 100.0 38 ............................. CCGTCCCGCCCTGACGGGTCGGTGCGGGCCGGTCGCGG 376291 29 96.6 36 .............T............... GCCAGCTCCTGGCGGCTGATCTCGGTGGCGCCGAGG 376356 29 100.0 41 ............................. GCGTTCGGCCGCTTCGCAACGGCCGCGGCGAGGTAGGCCAG 376426 29 100.0 36 ............................. ACCGGACCACCAATGCGACCGGTCCTCTCACCCAGG 376491 29 100.0 37 ............................. GTGAGGCCGGCCGGGCAGGCGGCCACGTTCTCGTAGG 376557 27 93.1 36 ............--............... ATCGACACCGTCGTCCAGAACGTCTTGCGGGGCGGT 376620 29 93.1 38 ........T.......A............ CACTTCGGGCAGCGCACGCCGTACACGCCGCGCTGCTG 376687 29 96.6 37 ..............C.............. TCCAGTTCGGCGGTCCGGGTCGAGTCCGTCTTCCTGG 376753 29 100.0 40 ............................. CCGAGCGGATCACGCTGCTCGTGGCCGTCGCGCTGCTCAC 376822 29 100.0 38 ............................. AACGCGAGGGGTTCGTGGCGTACGTGGCGATGATGGAG 376889 29 96.6 35 ..............C.............. GTCCGCGCTTCGGCCAGCTCCTGGCGCAGCTCGGC 376953 29 96.6 35 ................A............ ACCTGCGCCCGCAGCGTGCGGACATCATCCGCCAG 377017 29 93.1 39 ..T......................C... CACGGGAACTGGAGGGCGCCGCGCGGACCTACGCTGCGG 377085 29 89.7 37 .............G....A....T..... GCCTGGACCACCTCCAGGGCACGCGCTCCGGCCACCT 377151 29 82.8 0 A.....G...........T........GA | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 97.8 37 GCCGTCATCCACCCTGGAGGGTTCGGAAC # Left flank : CGGTCGGGCCTGCCGGTCGCGGTCGGTATTTCCGCGGCCAACACGCACGACAGCCTCGCCCTGCGGCCGCTCGTCGCGTCGATACCGCCGGTCCGCAGCCGGCGCGGGCCACGCAGACGCCGACCGGGCAAACTGCATGCGGACAAGGGCTACGACTACCCCCACCTGCGCCGATGGCTGCGCGAACGAGGTATCACACCCCGTATCGCGCGTCGCGGCAAAGAGACCTCACGGCGCTTGGGCCGCCACCGCTGGGTGATAGAGCGCACGATGTCCTGGCTCGCCGGCTGCCGTCGGCTCCACCGCCGCTACGAACGCAAAGCGGAACACTTCCTTGCCTTCACCGCACTCGCCACCACACTGATCAACTACCGCCGACTCACCAAGTGAAACGACGTCTTAGCGCTCTGACCTGCACTCCTGCACTACCGCCGAGTCGCTGCAAATCCTGTCCCTCGCAAGCCGGCAGGACCCAGGCTGACCAGCGATTTTACTCTCGG # Right flank : AGGTGAGATCGATGACAACGTGGGACATCGGCCGCAGGACACTGGCCATTGTCCAACCTTGGGTAGTTCCCCATCAGGTGCTGCTCTCGCTCCAGTTGGCGCTATCACCGACGGGATCCCGCTGAGGCTGACGCCTGTAAGCCCGACATGCGACGTGCTGTCTGGAAAGCCTGCTCGGTTATCGAAAGGCGGCGACGCCGGCTAGGAACAGGCCGAATGTCGTAGCGCTGACCGTAGCGCCCGCCTTGAGAGCTGTGACCCCATGGGCTCCGAGTAGAAATAGGGCGTTCCCTGCGATGAAGCCAGCGATGATCGAACATAGTAGGCCGATGGCCAACATGCTCTTGGCTGTCGGCGTCATGTCTGAGGGCCTGGGCAGGTTGGAGTGGAAGAGGTAACCGGGCGCATGCTGTCTTCGCCTCCCATGGTGACTTACCGCCGACGTTGAGAGGGCGGTTGTGATGCCGTGGATGTGGTGTAGGAGCGACGACCAGCTCAGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCCACCCTGGAGGGTTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 6 513054-513996 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929895.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 513054 29 100.0 32 ............................. GCGGTGACGGTGGCGTCCTCGACCCGGTACCG 513115 29 100.0 32 ............................. ACCTTCACCGTCCGGCCGTGCACGACCGCGAG 513176 29 100.0 32 ............................. TTCCACCGGGGGCGGTGGGCTCCTGTGCGCGC 513237 29 96.6 32 ............................G CCGCTTGGCCGGGATCACCGTGACGCCCTCCA 513298 29 100.0 32 ............................. GGCACCGGAGTTGAGGCGGCCCGGTTCAGGAG 513359 29 96.6 32 ............................T CACGTGCTGCTCAGGTAGGAGAACCGCCTGGG 513420 29 100.0 32 ............................. AACTCGACGAACGAGAAAGAAAGAGGTGGACC 513481 29 100.0 32 ............................. GGACTGACCCTCAGCATCCGCAGCCAGGTGCC 513542 29 100.0 33 ............................. CGGTCACCCTCGTGACTCTGCCGGAGATCGAGG 513604 29 100.0 32 ............................. GGCGTGGAGGCGGCGTTCCGGCTGCCCGACAA 513665 29 100.0 32 ............................. TCCCGATCGATGAGGGCGATCTCGGGGAGGGC 513726 27 93.1 32 ................--........... TCGCTGACCCTGATCGCGGCGGAGGCCGGACA 513785 29 100.0 32 ............................. GCGCGTAGCATCACCACTCACCCCGGAGAGCG 513846 29 96.6 32 ............G................ CGCCGCGCACAGGACGACGCCTGGCGCACCCA 513907 29 96.6 32 .....................G....... GGAACCGCCTTGGCGTGGATGGTCGCGGCGAG 513968 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TTCTCCTACCTGTCGAACTGGGGCCCCACCGCCAGCGCCGCCCTCCGCGCCCTCCAGTCCCTCGTCGCGCATGTCCGCCTGGACACGCCGCTCGCCGAGCTGGACGGTCTGGACACGGACAGCGACGCGGAGGACGGTGACCTGGAACGCCAGGCCGGCCGCGTCATGGAGGCGGAGATCGCCGCCCCGCTGGGGTTGCGGACCACCGCGAAGTCCTGACCGGTCTCCGCCGCGCCCATCACCCGTTCGGCCCAGCGTGGGGGCGAGCCCCTTGGGCCTGGGCGGCACTCCAACGGTTGCCACGGGCACGGCCGCGCAACGCGACGGCGGGCGCCTCCGCGACAGGACGCGGCACGCCAAAGGCTGAGCCCCGAACACTCCGAACTCCGCTGCCCAGGAGGCCACTTGACACACATACGGCCCGGTCGTCCCCAGATGCCGGACTCGGACCAAGCGCTGAAAACCGACCCCCACAGCAACTAAAAGCCCAGCTCAGCAAA # Right flank : TTTTGGGAACGGCGTAGCTTTTGGGTATGGAGCCGTTGGTGTTCGAGTATGGGGACTTGCATCTGCGGGCTGATCGGGGGGTGTTTGAGCTGTTCGATCTGGCCAGTGGGGGGGAAGGCGGGTTTCGGGTTCCCCTGCGTTGGCTCGGTGTGCTGGCGTACTACAAGAAGCCCGACAAGCCTGGCCAGTTGTTCTTCGGTGTCGTGCGGGATCCCGAGGCCGCGCTCTATGGGACGGATCGGTCCGTGTTTCGGTACAACACCTCGCCGGTGGTTCGGGTGCCGCCCGGTGATGAGGTGTTGTTCCGGGAGTACTTCACGGGTGTGGCCGCGCTTGTCGGTCGGCGGGTGGTCTGAGGTGATGTCGAAGGTCTTCGAGCGCGACGGCGTGCAACTGCGCGTTGACCACGGGGTGTTCGAGCTGTTCCGGCGTTCCGGGGTCATCGGCTCCTACCGCACGCCGTTGAGTTGGGTGAAGGTACGCGCCGAGGCGCGGGAAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 137002-136105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929763.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 137001 30 100.0 37 .............................. TCGCGGCCGTAGACGCTGATGCTCTCGGCCCACTCGC 136934 30 100.0 38 .............................. GTGTACAGCGCCTCGCACGCGAGGGTTTGCCCGGACAC 136866 30 100.0 35 .............................. GTGTAGTACTGGGGGCAGGCGCCGCAGGCGATGAG 136801 30 100.0 36 .............................. GCGCGGGGCCGGAGGTTCTCAATCCAAGGCATCGGG 136735 30 100.0 35 .............................. CCGGTGATCGAGCGGAACGCCGACGCGTTCCAGCA 136670 30 100.0 36 .............................. AGGGCGGCGCGGATGAAGTGCGGGTGGTTGCCGATC 136604 30 100.0 38 .............................. ATCGTTGAAGCGCCGTTCTGGCTAGAACGGCGGGACGA 136536 30 100.0 38 .............................. CTGCCGTCGCCCGCGTACTCCCCGGGGCGGCCGACGAA 136468 30 100.0 36 .............................. TTTAGGTAGGGGATGAGGTCACGAACGGACCTCCGG 136402 30 100.0 36 .............................. TTTAGGTAGGGGATGAGGTCACGAACGGACCTCCGG 136336 30 100.0 36 .............................. TGCACTACCTGACCGGAGCACCACAGTGACCACTCC 136270 30 96.7 38 ........................G..... GCTGCGGCCAGGGCGGCGGCGAACGCGGCCAGGCGCTG 136202 30 100.0 38 .............................. CCGTAGGGGAGGAGGCCATCGGTCGGCACGAGTTCGAG 136134 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.8 37 GTCCTCATCGCCCCTACCGGGGGTCACAAC # Left flank : CCCGGCCCCGAAGCCATGGCGCTCGACGGCCAGCCCAGCGCGCGCTCAGGATCTCCCGGCCCGAGCCACGCCTCGCGAGTCCAGCGGTGCGCATCACATCAGCCGTCCGCCGAGTCGCTAGCACGCCTCCCAGGGAACAACCGACGACGAGACGGAATCCTCAGGGCGCATTCCTCAGTCGCCACCGGTGAGCCGAGCAGCCGCTCCACGAGGTTCCACGTAAGGGAGGCATCACCTCCGTGCTCCGATGTGTCGCCGAGTAGACGGCCGTCAGCACCTCAACGACCGCGACCGTCGCGCGCACTCTCGCGATACTGTGTCAGCGCCTGCCGCTGCTCAGCGTCAGCATTTGAAGAAACTAGCCGTGTCGGTGGCCCCTCAGCCGCCTGTCCTCCGATTTCAGCGACACACCGGCTTGATCGGCACCACCGGCCATCTGCTGCAGAATGTGCCGATGACCGCCAACGCAATGCCGCTACCACCTGCGGCTTTACTGTGGG # Right flank : ATCCCACTGGGGCCGGGAGTGCCTCGGGCTCCACCAGTCCTCGTCAGCGGCGTCATCAACGGGACGCCCTTGTCTACGTCTCCGGTTCGGTGCCTACGGAGGTGGGCGAGGGGGAACCCTGGATCAGCAGGCAGCGGCCAAGTCCGATGCGGCAACTGCCTGCCGAGAAGTCGTCAGCGCCCCGGCATGGGTCTCGAAGTCCGCTGTCGAGCCAGTCGGTGAAGCGTTCGGCATTGCTCGGGCGACTGCCGGGTCCGGCGTGAGCGCGTCAATCCGCGCCGGCTCGCCGGAAGAGCATCCGTTCGGTTCATGATGCCAAGGCCATGCCAGGTGAGTGTGGGATCAGCAGAGTGCGGCCGGGGGCGGCCTCAATCCAGTGGAAGTCGAGGCGGTGGAGGATGGGGGTTCGGTCTCCCTGGCCCGTGGACGGCAGCAGGGTCACGTGGTCCAGCGCGCAGCGCAGCAGCATGCGCCGGTCTTGGAGGGTGGCCTCGTCCCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCGGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 203346-202985 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN929763.1 Streptomyces specialis strain GW41-1564T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 203345 30 93.3 37 ........................GA.... ACTCCACCGCCCAGCCGCTGGAGTCGATCTCCGCCGA 203278 30 100.0 36 .............................. GCGGCTGGACGGGGGGCCGTCGTGATGGCCGGCCGG 203212 30 100.0 37 .............................. TGGACGCCCTGTGGCCCTACTGGGCGCTGCGCGGCGG 203145 30 100.0 34 .............................. GCGTCGGCGGTGACGCGGTGGGCGACGAGAAGTA 203081 30 100.0 37 .............................. GACATCTGCGGTGTCCTGGTGTGAGGTGTCCCCGGGG 203014 30 86.7 0 .C......................GA...T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTCCTCATCGCCCCTACGAGGGGTACCAAC # Left flank : TGGAAGGCACGCCCTACAAGCCGTTCCGGATCTGGTGGTGACCAGCCCGTGCACGTCATCGTCGTCTACGACACCGCCGCCCAGCGCAACCCCAAGATCCTGCGCACCTGCCGCAAATACCTCCACCACGTCCAGCGCAGCGTCTTCGAAGGCCAGCTCAGCGACGCCCAGCTCCGCCGCTTCCAGGCAGCCGTCGAAACCGTCCTGGACCTCACCTACGACAACGTCCTCGTCTACACCTTCCCACCCGGCACCACCCCCATCCGGTCTCTAATGCACTCGCCGTCAGTGAGCGCTGCGGTTTTATACTACCCCCACCGGCACCACAGGCACACAAGCACTCCCCGACGGCGGCACCGTCAGAGGAGCATAAGAGACAGGCCCCCACGAGCCGGAATCTCAGCGACACACCGGCCCCAACCACACAACCCACGACCCACTGCAACCACCCACCAAAACAGCCACCCCACCACCACTCCCACCAGCAGCTTCACCGTGGG # Right flank : GGCAGGGCGTAGGCGCGCGCCCCGTCGGGACCGGCCTGTCTTCATCGCCCTCGCGAATCTCCCTCAAGGCATCCCCGATGATAACCGGAGGGGGTGCGGGGCTCACCATCACGATGCCGCCCCGGCCGCGATCCACGCGGACCATGCTCACCCCGTCATCGCCTCGTAGAACGCGCAGTACAGGGGACCATCCCCGCGGGCGCGGGGGTGGTCCGTGAAAGGAGAGCGGATGCCACAGCCGAGTGTGCGCGGGATCTACCTGCGAGTCGCCGAGATGAACCGGGCCGAGATCGCCCAGGACCCCGGCCTTGTGGAACTGCCGTCCGTCAGCACGCTGATGGAGAGGCACCACGTCTCGCGCACAGCGAGGGCAACCTCTGCGCCCGCTTCGGCCGATCCCGCACCGCCGTGCGGTCCGCCCTGGACAAGCTGGAAGGCGCCGGCCTGCTGGAGCGCTCCCCCGGGAAGCCCCGCGTGGTGCGCGCCCTCCCGCAGCGGCA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //