Array 1 26154-26016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQM010000013.1 Cronobacter dublinensis strain HA18014 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================== ================== 26153 26 100.0 31 .......................... TGAAATTATGGTGTACATGTCATGATGCAGG 26096 26 100.0 29 .......................... TGAAATGGTGGCGTCGGTGTCATAACGTA 26041 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================== ================== 3 26 100.0 30 GGGTGGGTAAGCGTAGCGCACCCACC # Left flank : GAGATCGTGCCGCTGGAAGATCAACTGCTGGTGGAGACGCGCATCAACCCGCGCGACATCGCCTATATCCGCCCCGGCCTGCCGGCGACGGTGAAGATAACCGCCTACGATTCGTCGATTTACGGGGATCTGAAAGGCGAGGTGGAGATGGTATCGCCGGATACGCTGCAGGATGAGGTGAAGCGCGATCAGTTTTATTACCGGGTGTATGTGCGCACCCGGAGCGCGGAGCTGAAAAACCGCAATGGCAAGCGCTTCCCGATCCTGCCAGGCATGGTGGCGAACGTGGAAATCAAAACCGGCCAGAAAACGGTGCTCGATTATCTGATTAAACCGCTCAACAAAGTGAAAGAGGCGCTGCGGGAGCGATAGGCGGGGGCGGGTGTCGTTGGGGTTGATGTTGAGTGTAGGGTTGATATTGATGTTGACATGGATGTTGATATGGCGGGTGCGCTGCGCTTACCCGCCCTACGCACAATGATATTCGTGTTGACGATATA # Right flank : ATGTAACCCCAGCCTATCTTTGTGCCATAAAAAAACCGGCTTTCGCCGGTTTTTTTGCTGGTGCGCTTAGCGCCCTGCATGTTTCATAATGCGCGCTTTGTCGAGCTGCCATTCGCGATCTTTCAGGTCGGAGCGCTTGTCATGCTGCTTCTTACCTTTCGCCACGCCGATTTTGACTTTGCACCAGGCATTCTTCCAGTACAGCGACAGCGCCACCACGGTATAACCTTCGCGGTTCACGCGGCCATACAGCGTGTCCAGTTCGCGCTGGTTCAGCAGCAGCTTACGGGTACGGGTCGGATCGCAGACCACGTGGGTGGACGCCACGTTCAGCGGCTGGAAGTTAGCGCCGAACAGGTACGCTTCGCCTTCTTTGAGGATCACATAGCTGTCGCCGATATTTGCTTTACCCGCGCGCAGGGATTTTACTTCCCAGCCCTGGAGGGCCAGGCCTGCTTCAAACTCATCTTCGATGAAGTATTCGTGGCGGGCGCGCTTGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGGGTAAGCGTAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 198272-199764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQM010000011.1 Cronobacter dublinensis strain HA18014 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198272 29 100.0 32 ............................. CGTTGACGGTTTCCCCGGTTGATATGCAGATC 198333 29 100.0 32 ............................. GAATCCCAATCAAGGAATTCATGGTCAGCAAC 198394 29 100.0 32 ............................. CACCGCATCGACACGCCAACCGCGCAAAAAGA 198455 29 100.0 32 ............................. CTAACTAGTGTCAACTTTTTGCGTTTTCTTAG 198516 29 100.0 32 ............................. AACTTCGCATCATCGCAGCGGCTGTAGAGAGC 198577 29 96.6 32 ............................A CTTCCACGCGGGCGGCCACGCCATCATCAATC 198638 29 100.0 32 ............................. TCCGAAATTTTTGCTAACTTGATGATTTTTCG 198699 29 100.0 32 ............................. CGTGAGCTCACAACCCTCAATTCTCGACGTGT 198760 29 100.0 32 ............................. AGGGTGGCGTTGTTCATTTTGCGTTCCTTACA 198821 29 100.0 32 ............................. GATCTCGCGGTAGTCGATTTCCGCACCGTCAG 198882 29 100.0 32 ............................. CGACCTGAGCCTCCACCAAAACCAGACGAAGA 198943 29 100.0 32 ............................. TCAGTTGCGAGGCTCATTTTATCCTCTACCCG 199004 29 100.0 32 ............................. TCATTGATACAGCAAAATTACGAGCCACGTTT 199065 29 96.6 32 .........A................... GGTACGAAGTCGCGCGTCGACAGCGTTCAGTT 199126 29 100.0 32 ............................. CAGCGCGCAGGACAGCGCCGCCGCAATAGCGG 199187 29 100.0 32 ............................. GACTGATAGAGATGACCGTAACGATAAGGGCG 199248 29 100.0 32 ............................. CAGGCAAATAACAAAAAACCCCGCCGGAGCGG 199309 29 100.0 32 ............................. CGCCCTGCTTCATTACGTGCCGGATCTGCACC 199370 29 100.0 32 ............................. CAGGCGCCGCCGAGGCGTATCACAACGTCCGC 199431 29 100.0 32 ............................. TTCTTAAACAGATACGGCCAGACCAGCACGCG 199492 29 100.0 32 ............................. GAATTTATTCTGTTATAACGGGGGTGTGGCCG 199553 29 100.0 32 ............................. TTTACAACGGTTGTAAAAACGCAAAAAAATCA 199614 29 96.6 32 .................A........... GGGCGGACCTCGACCAGCTCGGCGCCAATTTT 199675 29 100.0 32 ............................. CAGTTTGGGCATATTCGCCGCAACGTTATCCA 199736 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGTGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGAGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGCTCAAATAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCTCGAATATCCAGCTTAACCACCCGGCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCCAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGTTTTAAGCCGGAGGATGTACGACACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226013-227444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQM010000011.1 Cronobacter dublinensis strain HA18014 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226013 29 100.0 32 ............................. CGCTACCGACCGATGATTTTAAAACAGTGCGG 226074 29 96.6 32 ...........................A. TGGCGCGGATCAGGACTATATCTCGTGGGCAG 226135 29 100.0 32 ............................. CTTGTCGAACGGCGCGGCGCGGCTGGCAGAGT 226196 29 100.0 32 ............................. TATCAGGCATCCGCTCACTGCACGCTATCCAG 226257 29 96.6 32 ............................A GCAGCCCAAGACAGGCTTGGGTGCGGAACCTC 226318 29 100.0 32 ............................. GCACCAGCCATTTATTTCACCACTATGCCGTC 226379 29 100.0 32 ............................. GCACGCGAGTGATGCGGCGTGACTACGGTTCT 226440 29 100.0 32 ............................. GTCAGCAATGCCAGCACGATTGCGCTTCAGGT 226501 29 100.0 32 ............................. GGCATATCCTCCTAAAAAATATCGTAACATAT 226562 29 100.0 32 ............................. CGTGGCGACATATTTCGCGTCCAGATACGGAT 226623 29 96.6 32 ........T.................... AGGTTGTTAAGGCGCTTGGTGTGGGTCGCGCA 226684 29 100.0 32 ............................. GGTTTGATAAACGTTTCGGCGATAGTGGCTGC 226745 29 100.0 32 ............................. GCAGGACGGAGGGGGAGCGTCAGCAGCAGGCC 226806 29 96.6 32 ................A............ CGCTGCGCCTCTCCGCTCTGAACATCCGGCTC 226867 29 100.0 32 ............................. CAGCCACAAACACGCCGTCCTGTTGGTATGCC 226928 29 100.0 32 ............................. TGTGGGCCGCTGCTGAAAAAATTGGCGGCGGA 226989 29 100.0 32 ............................. TATTTTTGCGGGATCTGCGTCTGTTCGAGCAC 227050 29 100.0 32 ............................. GCTCGCCATTAATCATAATCACGTTAACTTTG 227111 29 100.0 32 ............................. GTGGGTTTCGTTTTGGCTGGTTGCGTTTATTT 227172 29 100.0 32 ............................. GCCTGTGGCCGCTCTATTCGCCTGGAGTGGGC 227233 29 100.0 32 ............................. TTTTTCGGCCACCGTCCATATAATTTTGGATA 227294 29 100.0 32 ............................. CCGTCCGTGGCCATCCGCTGGCTGTATGAGCA 227355 29 100.0 32 ............................. CAATGAGACTGACCCTGAACGACGTCAAAGAA 227416 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCTCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGTGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATGTGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAATATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGGGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAGAAAAACCTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTAGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTATGTGGCGAAAGAGACGCTGGAAACGTTACGACACGCGAGAAATAACGACGATGAATTTTATGATGCCGACTTTTTTATAAAAGCGCAGGACATTATGCCTGACTGGCCAACCCATACGGTAGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGGCGTGATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //