Array 1 101009-98907 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMS01000020.1 Escherichia coli strain SC366 NODE_5_length_372242_cov_70.737_ID_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101008 29 100.0 32 ............................. TTTTTTTCCTGCTTTCTGTGCGGCGTTAACAT 100947 29 100.0 32 ............................. TTCTCGTTTAAATGAAGATATAAAATCTCCAT 100886 29 100.0 32 ............................. GTTTAAATTGGTGGTGTGTTGGCCTCGGTAGT 100825 29 100.0 32 ............................. AACTACCGATGATAAAATTTTTGATGTTTTTC 100764 29 100.0 32 ............................. CGGTACACGAACTGGCAGATCTCCCCGCTGAC 100703 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 100642 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 100581 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 100520 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 100459 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 100398 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 100337 29 100.0 32 ............................. CAAGTCGGGCGAAATGCAGGACACTTTATCCG 100276 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 100215 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 100154 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 100093 29 100.0 32 ............................. CGGCGGCAATTGATGCGAAAGACCTTGGCAAT 100032 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 99971 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 99910 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 99849 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 99788 29 100.0 32 ............................. CTGCTGGCTTCGGCTTTTGATTTAACTCGCCG 99727 29 100.0 32 ............................. AGTCGAGCTATCACGAAGAACTGGAGGCAATC 99666 29 100.0 32 ............................. ACATCGGGTCAATGTTGAAGTCCTGCCCTACC 99605 29 100.0 32 ............................. GTTCTGCGCAGGGTTCACGAATGCGTGTTAAC 99544 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 99483 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 99422 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 99361 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 99300 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 99239 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 99178 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 99117 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 99056 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 98996 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 98935 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.6 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127258-126557 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMS01000020.1 Escherichia coli strain SC366 NODE_5_length_372242_cov_70.737_ID_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127257 29 100.0 32 ............................. AGCCTGCACTGCTACTTGAGCCGGATTTTTTC 127196 29 100.0 32 ............................. ATGTCCTAAACCTTCCCATGTTTCGGCCCCAT 127135 29 100.0 32 ............................. CCATGCGCAGTGATTCAAGTCGGCGCGCATCA 127074 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 127013 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 126952 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 126891 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 126830 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 126768 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 126707 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 126646 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 126585 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //