Array 1 10124-9313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJC01000021.1 Porphyromonas crevioricanis strain COT-253 OH1447 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10123 36 100.0 28 .................................... AAGACTTTATCGCGAAAACGGATGCGAC 10059 36 100.0 28 .................................... ATTCCAGCATTCCATGTCGCATGTGCTA 9995 36 100.0 29 .................................... TAAAATATTACGATGAAGAAGCTGGAGTC 9930 36 100.0 28 .................................... AGCCTCAGTCAATTTTGATTGAAGGATA 9866 36 100.0 28 .................................... AAGTTGTCTACATCTATCTGTTCAGAAG 9802 36 100.0 29 .................................... AGCAACGCACCGGCTTGCTCCATGCGGAA 9737 36 100.0 27 .................................... GACATGCATCGCTCCCCCGTTTTGGTT 9674 36 100.0 30 .................................... AGAAGCAGGCCATAGTCTCGCTCTTTTCCG 9608 36 100.0 29 .................................... AAGAGCCATTTGGCGATGATGTGAGTGAA 9543 36 100.0 29 .................................... TCACTCTTACTTATGATGATGCTATGTTG 9478 36 100.0 29 .................................... GATATCAAGAACGACTATTTGAAGCTAAG 9413 36 100.0 29 .................................... GGTTCGCATGTGTGGGTGTGGCTTAACGC 9348 36 88.9 0 ..........................C.A...CA.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 29 GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Left flank : TGTTTCATGCAGAAGAAATCTGTGAAGAAGTACCCTCAATTCCTTATTTAATATGCTTATTATCAGTTATGACATTAGCAATGACAAACTCAGAAGTCGTTTCTCAAAGATGTTGGTGAAGAATGGAGCCATTCGTTTGCAATATTCTGTGTACGAGGTTAATAATACCAACAGAATGCTTGAGAACTTAACTATAAAAATCGACGAGCAATTCGCGAGAAAATTTGAGGGAGGTGATAGTGTGATTATTTTTGACGTCTCTTCCGTAAAGTTGAAGAAATATGGCAATGCAATCCATCGAGATGCGGATGTCGTTTTTCTCTGAATACAGACCTGGGTCTGTATGTTTTATGTCAATTTGCTGTAATTCTCTGTTTATGAGAACTATAGGGGAGCTTTTCTAGCTTTTTTTCTTAGGGAGAGGGGAGAAAGAGATCTTTGATATTATTCCATAAATAATTGGTGGATACCAAATTATATGCTACTTTCGTCAGGGCAGA # Right flank : GCAATGGAAAGCTGAAAAGAAGTGCATTTTGGAAAGTTCTTAATACACCTATTTCTTTCGAAATCATAAAAAGAGGCTGTGTCAAAATTCAATTTTGACACAGCCTCTTTGTTTATTATGTTATGGGGAAGCAGTTTATTGCAAATCCATTTCGGAGATTAATCGTTTGCACCCGGCATACTTGTCGATAACAAAGAGCAAATAGCGGATGTCGCAGATGATACTGCGTTGATACTCCGGTAGGTATTCGATATCGCCTCCTACACCTTCCCAGTTGCGGTCGAAGTTAAGTCCGATCAGCTCTCCTTTTGAGTTGAAGACTGGGCTGCCCGAATTGCCTCCCGTGGTGTGAGTTGTGGCACAGAAATTCACCGGCATACGACCATCACTCATAGCATACTGCCCAAAGTCCTTATTGGCGTAGAGCTGTTTGAGCTTGTCAGAGACATTGTATTCCCAATTGTTCGGGTCTTCTTTTTCCATTACTCCCAAGAGGGTCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 78984-81658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJC01000022.1 Porphyromonas crevioricanis strain COT-253 OH1447 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 78984 30 100.0 36 .............................. CAATTGTGCTGGGTCAACATTTTTTAAATATTCGTA 79050 30 100.0 37 .............................. GTTGAGTATAAGACGTCACTATATGCTTCTGATAAAC 79117 30 100.0 37 .............................. CGTGCAGGGCGGTGCTTCTATTGCGGGAGGTTTGTTT 79184 30 100.0 37 .............................. TTCAACAAGCACTCCGCATTATATTCTTCTATAGACG 79251 30 100.0 37 .............................. AAACTCGGCTGAACAGAAGGTGGAGTAGAACCCATAT 79318 30 100.0 36 .............................. TTGGTTGGATTAAAACTTCGTGCTACTGCGACAGGT 79384 30 100.0 37 .............................. TTGATAGGAGCCGCTCTCGTGCAGGGCGGTGCTTCTC 79451 30 100.0 36 .............................. AACGAGGTCGCCATAATTACCAACTTCGTAGTCGTT 79517 30 100.0 35 .............................. CTGGATTCTTAACGATGGATAAAGACACGTTAAAT 79582 30 100.0 36 .............................. AATTGTGGCATGAGGTCGTAGAGCTTCGTGCGCAGA 79648 30 100.0 36 .............................. CTATTTGTCACATTGACTTATGATAATGCGATGTTG 79714 30 100.0 37 .............................. TGGTTTGACTATTTGTTTGTGACAGATTCGGCGCACG 79781 30 100.0 36 .............................. GGAGCGCGGATGGAGAGTTATAAGCATTCTGATAGT 79847 30 100.0 36 .............................. ATCGCTGCTATCTCGAATGATTAGGGGGCCAGCAGG 79913 30 100.0 36 .............................. GAAAATCTTCGACAAGGTGGTCACATCCTCAAGCTG 79979 30 100.0 35 .............................. GTTCGTAGGCAGTTTGAGTGCCGGTTAGCTTAGCA 80044 30 100.0 35 .............................. TTCCTTACAACTGCATTGACCGTACTTAAATACTT 80109 30 100.0 36 .............................. ATTAGCAGAGATTCTTACAAGTCTTTTATTGACAGT 80175 30 100.0 35 .............................. GGGGTGCCTCGCCACGACGGCAAAGCCGTCGGGCT 80240 30 100.0 36 .............................. GCGATGGTTGGAAATACGAATGCGTCGCGGTTTATC 80306 30 100.0 37 .............................. AGCGTTTTGATAAGCAAGAACAGACTGAGCAACAGCT 80373 30 100.0 36 .............................. GGGCACGTAAGGCCGTGGCACTTCGATGGTTTCTCG 80439 30 100.0 36 .............................. GCGGTCAAGCAAGTAAACAAAGATTTGCAGACGATG 80505 30 100.0 36 .............................. CTCAACAAAGACTCAGCATTATAATCTTCTACAGAA 80571 30 100.0 35 .............................. ATGAGATTAAAAACATTCCCATCGGTGCCTTTCTG 80636 30 100.0 36 .............................. CAACAAACCCAACAAAACTTTGCACTTCCTCCCAGT 80702 30 100.0 36 .............................. TCTGTGGAAATTCAGATAAGGACTCGATAAAAGGAG 80768 30 100.0 36 .............................. GCGCAATAGCGTAGATGAGCTGGTGTATGTCGCTGA 80834 30 100.0 37 .............................. GATGCAAGTCCCTCGATAGCTTCATGCACTTCATCTA 80901 30 100.0 36 .............................. TTGCTTTAATTTTCGCATAGGATTCTTGCTTTAACA 80967 30 100.0 36 .............................. TCAGTGAATATGGCTTCTGCGCCAGCTCCTGTTCTG 81033 30 100.0 35 .............................. GTTGCGTATGCCCTCCGTGGACGCCGCGCAGCTGG 81098 30 100.0 35 .............................. TATTATCCGAACGCGTTCGCGCTTTTACCGCGGAC 81163 30 100.0 36 .............................. AACGTCGTCAATAAAATTGTAATATTCATAGCCTTT 81229 30 100.0 37 .............................. TACTCCACTCTTAAAAATTCTTTTACACCAATTAAGT 81296 30 100.0 37 .............................. ATGGTTCTGTTAATATAAGTTTCTCAGATTTTACAAC 81363 30 100.0 37 .............................. GGGACACGATAAAAGACAAAACGGAGACGGAACACCC 81430 30 100.0 36 .............................. GTGATTTGCACAGGCTCTGTCCAGTCCGACATTGTC 81496 30 100.0 36 .............................. TAAGGACAGCTACACAAGAGAAGTCAATGATGGGAG 81562 30 100.0 37 .............................. TGATGAACTTCTCAGGCTCATCATTGATCGCATCTCT 81629 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 41 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : AAATGTATTGGTAATGTATATCATACTCGTATATGACATAGGAGAAAAGCGAGTTGGCAAAATGCTAAAGTTGTGTCGCAAATACCTAAACTGGATTCAGAACTCTGTTTTTGAAGGTGAGATATCTGAAGTCAAACTTCTCGAGCTGAAAGGATTAGCCCAAAAGCTAATGGACAAAAGAGAGGATAGTCTCATTATCTTTGCATCAAGACAAGAACGTTGGTTAGAAAAAGAAATAATCGGTAAGGAACGATGCTCCACTGATGTTTTTCTCTGATTAAACTCGGTTGGCTTGTCGAAGTAAGGGAAAGAAAAAAACAGTTCTACAAAAGAACCTTAGGCGATCTTTGAAATATTTGATTGTTAAGCAGATAACTAAGTCGTCATAGTCTCGGTAGTACTCTACAAATGCACTTCGACAACTTTAAGACACAAAAAAACGAATTCTTCTGTAGCAAGAACCCTTTGTTAATAAGGGAAATAACTGGTATTTTTGACGG # Right flank : ACGCCACGATCAACGAAAAGCCCATACTCCACAAATCTCTCAATCGCACCATATTGGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 56743-56299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJC01000028.1 Porphyromonas crevioricanis strain COT-253 OH1447 contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 56742 34 100.0 32 .................................. CGAAAAGCCCATACTCCACAAATCTCTCAATC 56676 34 100.0 33 .................................. CCTATATCAAGCATAGCCAAGACACTCTCAATC 56609 34 100.0 33 .................................. ATGCCATCAAGCTTATCCGCAATTCTCTCAATC 56542 34 100.0 44 .................................. TTGGAATTGAAACTGGAGGTTCATCGATGCCATCAAGCTTATCC 56466 34 76.5 31 ...T.TCTCAAT...................... TGCTCACACCTACAGAGGTTAATTGTGCGAC TA [56462] 56399 34 73.5 32 CTT.TC.C.CAA...................... AAGTGGACGGTGCCTGAATAGCTGACAACGGG T [56387] 56332 34 61.8 0 TTGA.TCTCAAT..A..................A | ========== ====== ====== ====== ================================== ============================================ ================== 7 34 87.4 34 GCACCATATTGGCGCACCATATTGGAATTGAAAC # Left flank : CTCTCAAT # Right flank : ATAGGAAACAGCTCAAATGCTACACAACAGTTTTGAAATAGTAAATCTCCTTACTGTTGGATAGCTTTACCGGTCTCTTGGGGAATAGAAGAAAAAGGGTATAAAGCCCAACAAAACCCCGACCATAGCATATACGAATATCTTCAGGATGGAGTCAAAACTGACACTATTGAGCAATGATTGCAGAAGCATTTCATCTATTGGAGCGGTATCCATGTAAACAATAAGGCTATCGAAAATAGCAAATAATGCTCCTATCAACCCTCCCAAGAATGGCACTAATGTGACAATATTATTCCTCGAGAATTTCATTAGAAAAATAATCCTTATAAATGCCCCAAGTTAATAAACGCATGGTTAATTCTACATAAGATTCGTATCAATTGGGATTGTAACTAAAGAGTTGACATCGGTCTTTAATTAAGACGATTTTGGGTTATCACCTTCCCAAATTAGCTCTTTGTCTCAATGTAGGGCATCGGTACAGAGCGAGATAGATT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.37, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCATATTGGCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 60-485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJC01000017.1 Porphyromonas crevioricanis strain COT-253 OH1447 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 60 30 100.0 35 .............................. TTCCTTTTGTTGTGAGCCATACAACCCTCGTGGCA 125 30 100.0 38 .............................. ATATACAGAACGAAGTTGGAGAGCTTATCAGGCTTGTA 193 30 100.0 35 .............................. TCTGCAACTTCTTTGGCTTTTCAATTTGCGGTTGG 258 30 100.0 35 .............................. GTACTTGATGCAAGAATCGTGTCTCTCACGTATGG 323 30 100.0 37 .............................. ATCTTTCATCTTGTTCTTGCCGACCATCCAACCTTTC 390 30 100.0 36 .............................. GGAGATACGTTCAGGATTAATTCTACCGTAGCCTTG 456 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : CGCACCATATTGGAATTGAAACTGGAGGTTCATCGATGCCATCAAGCTTATCCGCAATTC # Right flank : CCTCTCAAAGAGGCAAGCACGCTGCTGCACGACGAAAGCGGACAAACAAAGAGCTTTGATCGCTTTTATCGAGACGTCGCAAAGCTCGACGCAACTTACAATCGCAACTACTTGCAAGCTGAGTATCTATACGCGACAGCAAGTGCCGAGAGCGCAGCACGCTGGACGGAGCAGATGCAAGACGCAGACGACTACGATCTCCAATATCGCACTGTCGGAGACAGCCGCGTGCGCGAAGAACACCGCGCACTCGACCTTGTGACTTTGCCCACTCGTCACGCCTTTTGGGAGACCTACTATCCCCCGAACGGCTGGAGGTGCCGCTGCACGGTTATACAAGTGAGGAAAGGCAAATACCCCACCACCGCGGACGCTGTTGCGCTGGAGGCAGGACAAGCAGCTATCAGCGACAAAAACAAGATTTTCAGAGGGAACCCCGGCCGGGAGGGCACTGTCTTTCCGGAAAATCATCCGTACTACGGAGAACGCGGTTACGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //