Array 1 492-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKO01000294.1 Salmonella enterica strain BCW_5104 NODE_294_length_544_cov_0.756989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 491 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 430 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 369 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 308 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 247 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 186 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 125 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCCAGCGGGGATAAACCGCGTCGCGGAAAATTTCGCATTGACGATAAAG # Right flank : GAAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-501 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKO01000322.1 Salmonella enterica strain BCW_5104 NODE_322_length_514_cov_1.14023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 107 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 168 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 229 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 290 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 351 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 412 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 473 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGG # Right flank : AATTATTTCTGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 370-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKO01000420.1 Salmonella enterica strain BCW_5104 NODE_420_length_418_cov_0.79056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 369 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 308 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 247 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 186 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 125 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 64 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTT # Right flank : GGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160223-158977 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKO01000005.1 Salmonella enterica strain BCW_5104 NODE_5_length_265593_cov_4.76445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160222 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 160161 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 160100 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 160039 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 159978 29 100.0 27 ............................. TATCACTACCGGATCGGCTGAATTGAA 159922 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 159861 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 159800 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 159739 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 159678 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 159617 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 159556 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 159495 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 159434 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 159373 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 159312 29 100.0 32 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAA 159251 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 159190 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 159129 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 159068 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 159006 29 86.2 0 TAA.........T................ | A [158979] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177250-176368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKO01000005.1 Salmonella enterica strain BCW_5104 NODE_5_length_265593_cov_4.76445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177249 29 100.0 32 ............................. GAGAGCAGTAGTATGAAAAAATTGGTAATATC 177188 29 100.0 32 ............................. AGATCCGTTAACGGGGATCAGGCGGCCTGTTT 177127 29 100.0 32 ............................. TGGTCGCGGGCTGGAACAGTGTCTGCGCCGCT 177066 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 177005 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 176944 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 176883 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 176822 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 176761 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 176700 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 176639 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 176578 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 176517 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 176456 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 176395 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //