Array 1 93080-91466 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBF01000006.1 Cronobacter sakazakii strain LN01 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93079 29 100.0 32 ............................. TTCGATAATCCGTTTGACCGGTATTTGCGTTT 93018 29 100.0 32 ............................. ATAACGTGCGTGATGCTTTCCCCGATCTGCAT 92957 29 100.0 32 ............................. TGAGGTAAAAACTTATGCTCCTGAATTTCAGG 92896 29 100.0 32 ............................. CCGTTTTCGTTATCCACGGCGAAAACGACGGG 92835 29 96.6 32 ..C.......................... GTTCTGCTGGCATTTCACCTCCATTGTTCGCC 92774 29 100.0 32 ............................. GCGAGGTTGGGTTGATTGACCAGTTAATGCAG 92713 29 100.0 32 ............................. AACTCACGAACAAAATTGGCGAACAGGGCAAT 92652 29 100.0 32 ............................. AGATCGTGAGGTGAGAAATTATCGTGCGGGCG 92591 29 100.0 32 ............................. ATTTGCTCGTGTGTCATTGGCTTGGGCGTCAG 92530 29 100.0 32 ............................. CTCCATCAGAGTGGCTCCGGTCGTACCGCACG 92469 29 100.0 32 ............................. TTTTTGGGCGGCAGGCTAAATGGCTGGGGAAT 92408 29 100.0 32 ............................. CTGCTTATAATTATCAACACTTGGCTGTCAAA 92347 29 100.0 32 ............................. ATCTGATTCTCGACCGATTAAGGAAAAAGCAA 92286 29 100.0 32 ............................. ATCTGATTCTCGACCGATTAAGGAAAAAGCAA 92225 29 100.0 32 ............................. TTCGTGCGGAGTGACGGCCCAGCCGCCCAGCT 92164 29 100.0 32 ............................. ACAACAGCCAGGCAAATACCTCAAATGGCTCC 92103 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 92042 29 100.0 32 ............................. GCATCTGTATCATCTGCACCTTCCGCACCAGT 91981 29 96.6 32 .................C........... GTCATCGAAATCTCCGGCATCAACATCAACAA 91920 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 91859 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 91798 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 91737 29 96.6 31 ............T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAA 91677 29 96.6 32 ............T................ TGGTCGAAACCGCGACTAACGGCGGTAAGACG 91616 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 91555 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 91494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120239-119477 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBF01000006.1 Cronobacter sakazakii strain LN01 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120238 29 96.6 32 .C........................... GACGGCACTGACCTTGAGCAGGAGGTTCGAAT 120177 29 96.6 32 .C........................... CCGTGGATGCCTCAGTCAAGGTTCCGCTGTCC 120116 29 93.1 32 .C......G.................... GTGGAGCGCAGCAGCACCGACCCAAACCGCGT 120055 29 100.0 32 ............................. GCCGCGCCGTATTAACGTACCTGCAATGATTC 119994 29 100.0 32 ............................. TAGGCGTTTCAATTGGCATTTTTCTCACCCTC 119933 29 100.0 33 ............................. CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 119871 29 100.0 32 ............................. TTTTTGTTTACCGGTACTTTCTAAACGGCAAG 119810 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 119749 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 119689 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 119628 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 119567 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 119506 29 79.3 0 .C...........C...A..A....C..T | T [119479] ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAAGGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCACAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //