Array 1 18778-17733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXA010000004.1 Parabacteroides johnsonii strain 1001275B_160808_A11 NODE_4_length_243325_cov_48.9085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 18777 47 95.7 28 .....A.....T................................... AGTCTTTTGCGGCTTGAAGCAGCATCTC 18702 47 100.0 30 ............................................... CGATTGTTAAGTATAGCAGCAGTACGAGTA 18625 47 100.0 30 ............................................... GAAATACGAATTGCCTTATCCGAAGTGTTA 18548 47 100.0 30 ............................................... ACAACAGTACCAAAGTAAGCAACGGCGATA 18471 47 100.0 30 ............................................... CTAGGGCCTGCAACATCAGCCGGAGGAACA 18394 47 100.0 30 ............................................... ACGGTCTGGCTTTTGAACATATTCATACCA 18317 47 100.0 30 ............................................... GGTACTAACTCTGTGAACACAGGGGTGATA 18240 47 100.0 30 ............................................... TAAAATGTTTGAGGTTGAAAAATTGTCGTA 18163 47 100.0 29 ............................................... TTGAGAACGGAGATGAGGAACCAGAATAC 18087 47 100.0 30 ............................................... TTATAAGTCAAAGTAATAAAGAGGGGTGCA 18010 47 100.0 30 ............................................... AGAATAGCTTTTGCTTCAGCTTCGGATAAG 17933 47 100.0 30 ............................................... GTTGAAAAATTGTTATAGAATCAACAGAAG 17856 47 100.0 30 ............................................... TATAATGCTCGACTTGCGTCTTTTGGGCTC 17779 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.7 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GAACTGAACGGTCGCCAAGCTGTACGCAAAGGACCGTGGAAATTGGTCCACATGAATATCCGTGGTGACAAGCCCTATTATGAATTGTATAACTTAGCTTCCGATCCATCGGAACGGCATAATATACTGGATCAGTATCCTGAAAAAGTAGCGGAACTGAAAAATATCATGGTTCGTGAACACAGATCGGACCCAAACTGGCCGCTATTACCGAGTGAAAAATAACCTTCCAAAAAGTTTGTTTCCAATAACAAAAATGACCTCTTCCTGCTTAACGAGTAGATTACTATTTACTCGATAAGTAGGTAAGAGACAACATATCAGATCTTAGTATATAGTAAAAAAAATCTTAAAGTATCTGATATTAGAATTAATGGTTGGGATCTTAGGAATCATAGTCCTTAAGTATATGTTGGTATAGAAAAAATTTCATAATATGGCTAATTATAAACATATTCATATTTGTAGAGTATTATATACTTTGCATCTACATCTCCAAA # Right flank : TGATTTATCATTATCAATTGTTAATCAACAAATTACACAGCAAATTAGAATAAAAAAATGGATGTTGTTTCAAAGATAAAATCCCACTATTAAGCGGGATTTTTCTTTTTAAAACAGTTCTAATTGCTGCCCTGGAGTACTCACCTCCATTGTCTTTTTACCATAAAACAGTTCGATATTTCCAAACTGCTTATCCGTAATACACATAATTCCGACACTTCCATACTCTGGAATAAACGATTTAACCTTTTTTATATGCACAGTTGCATTCTCGCTACTGGCACAATGACGGACATAGATAGAAAACTGAAACATTGTAAATCCATCCCTTTGCAGATTCTTTCTGAAATCAGCATATGCCTTTTTCTCCTTCTTCGTTTCAGTAGGCAAATCAAATAATACAAGTACCCACATAACACGATATTCGCTAAATCGGTTCATAACTACATTTCCGGATAAGAAATTTTGCGCAACTCTCCACTGAAGCACTTATACAAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //