Array 1 92164-90756 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJT01000001.1 Pseudomonas aeruginosa strain Pae28 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92163 28 100.0 32 ............................ TATTTGGGAGTACATGCCGCCCAGGCTGGGCT 92103 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 92043 28 100.0 32 ............................ AGGTTGCCGGAGTCTGCCGAACAGTTCTGGCC 91983 28 100.0 32 ............................ TCGATCCTGGGGCCGTTGTGGCCTCGCATAAT 91923 28 100.0 32 ............................ AAGGTTCGCCAATGTTCTACGACTGGATATCC 91863 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 91803 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 91743 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 91683 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 91623 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 91563 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 91503 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 91443 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 91383 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 91323 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 91263 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 91203 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 91143 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 91083 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 91023 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 90963 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 90903 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 90843 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 90783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1002-2870 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJT01000040.1 Pseudomonas aeruginosa strain Pae28 40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1002 28 100.0 32 ............................ ACTAAAAGACTCAGAAATCGTGCACGCCTTCC 1062 28 100.0 32 ............................ TGCAGACGATCAAGCCGGGTGCATCGAGTGAG 1122 28 100.0 32 ............................ AGGCGATGGCTGAAGTTCCGGCTGATGCTACT 1182 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 1242 28 100.0 32 ............................ CGCAGTAGTACCCCGATCAGTAACGGCATCAG 1302 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGCGGCGT 1362 28 100.0 32 ............................ AGGGGGACGGCCTGTCGGCCAGTCAGTACCGG 1422 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 1482 28 100.0 32 ............................ TCGGTCGGGCTACGCCTAACGTAACGTCTGCA 1542 28 100.0 32 ............................ TCCAGGCTGCTGATGGCGTGTTCGAGGAAGGC 1602 28 100.0 32 ............................ TGGATGTTGGTGGCGCCGTCCAGGGTGTAGGC 1662 28 100.0 32 ............................ TGCGAGTCCAGAACCAGGTCGATGCCGACGGT 1722 28 100.0 32 ............................ TCTCCGAGAAAATCATGACCAGCAGACGACGA 1782 28 100.0 32 ............................ GGCACCTTCAACAAGCAGCTCGCCGCGCTGAA 1842 28 100.0 32 ............................ TTGTCGTAGTAGGTGCTGACGCCACGGACCTT 1902 28 100.0 32 ............................ TCGGGCCATATCGTCGACGCCGACACCCGCAT 1962 28 100.0 32 ............................ TGGCGTAGGCGACGAGACTGTCCAATGGCCGC 2022 28 100.0 32 ............................ TCCATGTCCATGAACAACTCGGCCTGAGCCTG 2082 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCTATGGTG 2142 28 100.0 32 ............................ ACAGGTCACAATGCGAACTGAACATCACACTC 2202 28 100.0 32 ............................ GGGACGAACATGCGCCGGAGATCGCAGCCACT 2262 28 100.0 32 ............................ GAACGGATCATCGGGTACCTCTACGAAACCTG 2322 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 2382 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 2443 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 2503 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 2563 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 2623 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 2683 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 2743 28 85.7 8 ...................C..GT.G.. CCGCACGT TTCC [2765] Deletion [2779] 2783 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 2843 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13461-11395 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJT01000040.1 Pseudomonas aeruginosa strain Pae28 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13460 28 100.0 32 ............................ TCGCAGATGGGGGCAAGTTCTCGTTCGACAAC 13400 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 13340 28 100.0 32 ............................ ACGGCGTTACGTTACCTGTGGCGGCCGCAGGC 13280 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGATGTGTGT 13220 28 100.0 32 ............................ GCCTGGACAACCTCTACGGCCTGACCACGCTC 13160 28 100.0 32 ............................ TGACCACGCTCGCGGACAACATGGCCGTCATC 13100 28 100.0 32 ............................ TTCCATGCTGAGGGTAGCTACAGCACGAAGTT 13040 28 100.0 32 ............................ AAGTCCCAGGGCCAGTTCAAGCACTCTGGGAA 12980 28 100.0 32 ............................ TGCCCGGGTTGCCCGGGGCTCTCCACAGAAAG 12920 28 100.0 32 ............................ ACGCAATGTGGTTAAAGCAGTCATCGAGTTCG 12860 28 100.0 32 ............................ AGCACAGCGCCTCGACGGTGTCGTTCTGGTGG 12800 28 100.0 32 ............................ TACGAGCAACACGCCAACTGCACCGAGGCCAG 12740 28 100.0 32 ............................ ACCAGGGCGCAGACGAAAGCAGAGAAGGCCAG 12680 28 100.0 32 ............................ TATGGGTCGGAGGAGGCTTCGTCATGCCTGAT 12620 28 100.0 32 ............................ ACACGAACTCGCCTGGATAGAAGACATGGCAT 12560 28 100.0 32 ............................ TTGATCAGTCTCAAGGTGTGAGATTCCGCCCC 12500 28 100.0 32 ............................ ATGTGGTAGTCGGTGATAACGAAGCAGTTCAG 12440 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 12380 28 96.4 32 ................A........... AACATCGACGGGTCGAACTGCTCCGGCACCTG 12320 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 12260 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 12200 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 12140 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 12080 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 12020 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 11960 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 11900 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 11840 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 11780 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 11720 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 11660 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 11600 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 11540 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 11481 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 11422 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //