Array 1 193881-195500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJX010000006.1 Cronobacter sakazakii strain Crono07-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193881 29 100.0 32 ............................. GTTTATGGCGGCGTTCAGTACCTTTTCACCTC 193942 29 96.6 32 ............................C GCTGATATGCGTAAGGCTCGAAGAAGTCGAGC 194003 29 100.0 33 ............................. CGATACGCGCTGGCTTACAAAGCCTATCGCGGC 194065 29 100.0 32 ............................. CTTCCGCTCCTCTTGTGAGAGGCTTTCCAGCT 194126 29 100.0 32 ............................. AGCTTGGCCGCCAGGCTTACGAATCGCTGGTG 194187 29 100.0 33 ............................. CTAAATTAGCAGATATTAGCGCACTGCTTGTTG 194249 29 100.0 32 ............................. CTTCAGGTTTCCGACCTGCCAAATGCCATGCA 194310 29 100.0 33 ............................. TTGGTGTTGGTGCATATAGCAGTCAGGACACTT 194372 29 100.0 32 ............................. CAGCCTGAATATGACCCTCGGTGAGCAGGGAT 194433 29 100.0 33 ............................. TGGGGCGATCTCTCGCTCAAATTAACCACCGGC 194495 29 100.0 32 ............................. CCTTCTGCGCTCCCTCCGGAGATTTTTTCGAT 194556 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGACAC 194617 29 100.0 32 ............................. CCCCGCTCTTTTTTCTGGCAGGTAATTATATC 194678 29 100.0 32 ............................. CTGCCGGTTTCAACGGTAACATTGTCCACGAT 194739 29 100.0 32 ............................. CCGCCGTAACGGCTGATTATGGTCGAGTTCTG 194800 29 96.6 33 .C........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 194862 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 194923 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 194984 29 96.6 32 .C........................... GCGTTTTACAACACCCCTCTCGGCGAGCTGTG 195045 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 195106 29 100.0 32 ............................. TCGGCACCGGTTGCGGCGTTTTTAGTCAGAGC 195167 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 195228 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 195289 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 195350 29 100.0 32 ............................. CCCGTGCAAACGAGCATCGACGGTGGCGTGGT G [195371] 195412 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 195473 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTCGCGCCTGTCACTCGCCACCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 221197-222749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJX010000006.1 Cronobacter sakazakii strain Crono07-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221197 29 100.0 32 ............................. TGCCGTGGCATCTTTACTTGCTTCATTAACCG 221258 29 100.0 32 ............................. CCAGCTATTTTTTGCAGGTCAGGGGATAGATA 221319 29 96.6 32 ............................A CCCCGTCCGGTATATTCCTGGGCTGGCCGGAG 221380 29 100.0 32 ............................. GTGCGCAGAAATCGCACGTCGAGGCGACACCT 221441 29 100.0 32 ............................. GGGCTGCATACCGGCGGGCCCGAGCGCTTCCC 221502 29 100.0 32 ............................. GTTCAACGATAAAACGCGGATCACCAGTGTTA 221563 29 96.6 32 ............................T TCCACATTCATTATATTGACGGAAACGACAAT 221624 29 100.0 32 ............................. GAGTGACTGTGCGCCCCTCCAGAATCCACAGT 221685 29 100.0 32 ............................. GCGGTGCCGCATGAAAATCCACTTCTACAGCC 221746 29 100.0 32 ............................. CATCCATTGCTCGCGTCGCCCAACCATTAGGG 221807 29 100.0 32 ............................. TGATAACGCCTGTTTTTGCGACCAGGTCAGCT 221868 29 100.0 32 ............................. ATTGATGCCCGCTAACCCGGTGCGGGCGTACA 221929 29 100.0 32 ............................. CCAGTATCACCTTTCAATTTTACCCCTTCCAT 221990 29 100.0 32 ............................. CCCCTGACCTGCCAGTGCTTCCACTGTCGCCA 222051 29 96.6 32 ............................C ATCAATATCGACTATTTCCCTTTCAATCGCCA 222112 29 100.0 32 ............................. TGCCGCATTTGCGGTGCTGAAATGACAATTCA 222173 29 100.0 32 ............................. CATGGCTTGACCCTGATTTGAATACAAAAGAA 222234 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 222295 29 100.0 32 ............................. GATATATCAACTAGTTGAAATATATCGTTTTT 222356 29 93.1 32 ...........G................T ATCCCCCAGCATAACTCATCATCTCGCTGGCC 222417 29 96.6 32 ...........G................. GTGGTAACAGTGGTAACAGTGGTAACAACCAT 222478 29 93.1 32 ...........GG................ GATTCTGTCGGCGGGTGGCAGAACTCGCTGGA 222539 29 96.6 32 ...........G................. TATTCATCTTAACTCCTAAATTTTGTGAAAAA 222600 29 96.6 32 ...........G................. CGACACGATCCGCCGCCTGGGTTACGAAAGCG 222661 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 222721 29 89.7 0 ...........G.........G......A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.2 32 GTGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : AGTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATGGTATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAATGCGATCCCCGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //