Array 1 28564-30093 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWE01000226.1 Pseudomonas aeruginosa isolate J, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28564 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 28624 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 28684 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 28744 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 28804 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 28864 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 28925 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 28985 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 29045 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 29105 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 29165 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 29225 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 29285 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 29345 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 29405 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 29465 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 29525 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 29585 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 29645 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 29705 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 29765 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 29825 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 29885 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 29945 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 30005 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 30066 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40256-38967 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWE01000226.1 Pseudomonas aeruginosa isolate J, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40255 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 40195 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 40136 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 40076 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 40016 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 39956 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 39896 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 39836 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 39775 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 39715 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 39655 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 39595 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 39535 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 39475 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 39415 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 39354 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 39294 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39234 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 39174 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 39114 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 39054 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38994 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //