Array 1 68-1121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVJ01000027.1 Pseudomonas aeruginosa strain AZPAE14825 AZPAE14825_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 128 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 188 28 100.0 32 ............................ CTCGACGGGGCTTGGCGCACCGGCGCCACTCC 248 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 308 28 100.0 32 ............................ AATTGCGGCACGATTGAGGATCACCCAAGCTA 368 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 428 28 96.4 32 ........................T... ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 488 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 548 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 608 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 668 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 728 28 100.0 32 ............................ AACTCCCGCGCCAAGGGCGCCCGCGTAGAACT 788 28 100.0 32 ............................ GATACAACCTGGCGATGGGGAACCAGGTGGAT 848 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 908 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 968 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 1028 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [1040] 1094 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGAAATCGGGGGGCAGGTCATAGGCAGCTAAGAAATTGGTGAGCCCGGCTTTCGCCATCAGCGTCTTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11007-9646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVJ01000027.1 Pseudomonas aeruginosa strain AZPAE14825 AZPAE14825_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 11006 28 100.0 32 ............................ TTGCGAATGTCTGGGTGATCGTTGATTGAGAT 10946 28 100.0 32 ............................ ACTCGCCGACCGTCGTCAGCACCACCAATGGA 10886 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTCTC 10826 28 100.0 32 ............................ TTTAGATCCTCCAACCCGGTAAATCACACGTT 10766 28 100.0 32 ............................ TGATCGCGTTGTAGGCGCAGGCGGGTTCGGGC 10706 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 10646 28 100.0 32 ............................ TTGTCGCTTCCAATTAGGCCGGCGCGCTTCTT 10586 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 10526 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 10466 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 10406 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 10346 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 10286 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 10226 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 10166 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 10106 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 10046 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 9986 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 9926 28 100.0 45 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9853 28 67.9 32 NNNNNNNNN................... GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 9793 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 9733 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 9673 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================= ================== 23 28 98.4 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //