Array 1 8626-8121 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAX01000013.1 Lentilactobacillus parabuchneri strain FAM23163 FAM23163_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 8625 29 100.0 32 ............................. TAGGGCTTTTTACACCGTTGAAGCTAGATGCT 8564 29 96.6 32 ............................T TCAAGTAGTTGTCGATAAGCCTACTGGTATCA 8503 29 100.0 32 ............................. GTCCTTCTTGCGCATGTCATTAAGATTATCCG 8442 29 100.0 32 ............................. TCAAAACTAATTTATGGGTGGCAAACTACGGT 8381 29 100.0 32 ............................. AAAAAGACCGTTTCACCGGTCATTGAGTTTGT 8320 29 96.6 32 ...................A......... GTTATCTGATTCATTAGTTACTCTCCCTTTAG 8259 29 93.1 81 .......T..........A.......... ATCCGTTCTGACCTCTTGGCCCACTATCTCACGTATTCCCCACGATCCTACAATTGGGGCCGTGAACTTCGCAGAAACCAA 8149 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================================================================= ================== 8 29 97.4 39 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : GTTAAGTGGACGAGAGATGTTCACTATAATCTGCTAGAAATGAACCGAGTAACCTGGCGGGCTTTAGTTCAGTCTGCTATTCAAGAACTAGGCGGGCAGGCCACTTTAGCTCAGTTGTATGATATTTTAAAAGGATGTAAGCGCGCTGAAAGTGTTTCGGATTGGAAAGCGAAAATACGGCAAACACTCCGTGCTAGTGGATTTAAACGTGTCAAAAAAGGTACTTATACGTTAGATATTAGCTAGGTTGGGTCCTTTGAATTTGGTTGATGAGAATCTATAAGTTTCTCCATGTTCCTAATTTTTGCTGAATACTGTGTCAAACTGAGTTTAGTAGTTTGCGAAAAAGAATTCTCCTGTGATAAGGAATGGATTCCTCGTAAATTGGATAATGTATGCCAACACTTAGATGATTTCGATCAATTAAACTTAAAGCTAAAAGTCATTGAAAATGAGTGTTTTGCTATTTTCAAATGGCTTAATGGCAGCGTTTCTTTAGT # Right flank : GTTAAAGAAGTTATGACCAACGGGGATTTAGGAGAACTTGGGTTAACATCTAAGCCCAAAGCGACCACAAGTACTAGTAAACGAACTGTTAGCTCAACCAAGAAGGCATCCAAATAGGATGTTTTTTTATTATGAGGATGAATTAGCATATAAATCCAAGCTAATAGGCACTATCATTATTACGTGCTATATTATCTTCGTAGAGAGTCAATCGCTGAGTGGCGTGGAAAACCACTCATCACTCTTCCCATCGTGTTGAACAGCGGATAGCCCAATCGGCTGACTATAAATTTATTTCAATAAATTTAATTTATCCGGCGGTGAATAGCCGGAACGGTCCTTTAGGGATTCGTTAGTAGACTGATTAATGATGAAAGAGCCACTTTTCGCTGCCCACACCGAATGGTTTTTCTTCATGCTGATGCAAGGAATGGAATCTTTTCGGCTAAAATGCTGGACTTCTTTAAAATTATTGGTAAACTTCAGTTGCTTATGAAAGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35884-35611 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAX01000013.1 Lentilactobacillus parabuchneri strain FAM23163 FAM23163_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35883 29 93.1 32 ...........G...........A..... CAATCGCCAAAATGAAAACACATCAAGTGAAA 35822 29 100.0 32 ............................. TGTGCCCACCAGCCAGCTGTGCGCCATCTGGC 35761 29 100.0 32 ............................. AAGACCTTCGTACCCCCGACAACACGTGAGTA 35700 29 93.1 32 ...........G................C TTCGGTGAGATAGTGGGCCAAGAGGTCAGCGC 35639 29 86.2 0 ...........GCA.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTATTCCCCACTGGTGTGGGGGTGATCCT # Left flank : GCCAAAGATAAAATCATTTCCTTTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACCATTGATCAAGTGCGGACCGATGGAGTTGAATTAGAGAACGCATTGGATTCCCTGAAGGATTTTATTGGTGATTTACCAATCGTTGGCTATAATTTGCGCTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAAAATCGGATGATCGATTTAATGCCAATTGTCAAAAAGGCTGACCAATTCCTGGATAACTATCGGTTGGGAACAGTATTGGAAAAGTATGGTGTTGACAATGCTGCGCCACATAATTCATTATCTGATGCCAAAGCAACACTTGGATTAGCAAATAAACTAATGAAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATAGCAGGGATTGTTTAGT # Right flank : GGATATTATGGCCGCTACTCGTGAAGATGTGCGTATTCCCCCAATGGAACGGTTGATTTCACGGGTTAGTAGTATTCCTTACACATTAGGAATAACCCTTAAAAGTAGAACTCATTCATGTTAGATCATGACAGGGTTAATAGCCAAAAATTGAACCTACAAAAATAGCACCTAACCAGCCGTTTTTCACGAACTAGTTGGGTGCTATTAGTATTTGCTTATTCATCAACTAATTTCTCAGAACCGATAAATTTCTTGTAAAATATAATGTGCAACCAGATGCTAACGATAATTATCTAACAGCTTAAATTTATGCTGGCTTTGGAAGTATGCACCAACCTTCAGTAACAACTTATCATTACCCTTAGCTGCCTCAAATTGAATTCCCAGAGGCATTTTTTGCTTGCTAACGTATGTTGGTAAGCTAATTGCGGGCTCTCCTGAAAGGTTGGCAAGCTGAGTGAATGGTGTCTTGGTCAATCCATGAAGCCAAGCATCGT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACTGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47583-47372 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAX01000013.1 Lentilactobacillus parabuchneri strain FAM23163 FAM23163_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47582 29 96.6 32 ............................T ATCGATAACACCATAGGCAATCGCAACTGTGG 47521 29 100.0 32 ............................. GTCTTCAGCAGTTAGGAAGCTGTCGCCGTTTT 47460 29 100.0 32 ............................. GGAAGCTCGAGTTTATCGGCTTCCGTTTTCAG 47399 28 79.3 0 .......T.....A....A...C-.G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCACGTGTGTAGGGGTGATCCC # Left flank : ATGATTTAATTAGTCACGGTGTTGATGCAGACTTGTATGAGCTTCAGGGTGCTGAGCATATGGACGAATTGTTTATGCAACCAGAAATCACTAAATTAATAATTGATTTTTTGACTACACACTTTGGGAATGGTGCGTAGATTCTAGAACTTTTTCGAAATCAAGGAAATGGTCTTTAACTAAAATTATTTTTCAATGAAAGCGAACTTCTGAAACAATTTATAAAGAAGTTCGCTGTTTTATTTTGGATATTTGTTAACTGAAGTAAAAACCTTGTGCTGAGGAAAATGAGGGGGAGCTAAAGTAAATGTTGAGATGTCGGCCGAATGTTAGTAATATTAGTTTGTGCGGTGACGTGGATCAGGGATCGAAAATAGGCTATTCATACCTTATGGGTGATGCAAGTGGTCTTTTGTAGTTGGCAAAACTTTATTTGAATAGAACTAATGAAATTTGACTGTTTTCCACTTTAAGAATGGCTATAACAAGGATTTTTTAGT # Right flank : CTTCAATAATCAGTGATCAAGCTGCTAAGATTAAACAAGATACTGAGTTCCACTTGGGACTTAATTTGGCCATAGTTTTAGGCCAGTTAAAATCGAACGAATAATCATAACCGTACACGCATTTTTAGTTAGGGGGTATCAATTAAATATGGCTCATACAAAACCAAACTTAATTACAGCAAAACAGATCGACACTTTTATTAATTCAAATGCAAGCAATGTGGGACAATTGGATGATAATACGCCTTTAAAGAAATTGCCTAAAAGCTTTAAGCCTTTAAAGAAATTAAAAAATCAGGTAGCGTCTCAGGCAATTATCCAAAATTTGTTAAAGGAACAGTATTTTTGGAGTACCCAAACAACAATTTTAGAGCCAGTGTCCACCTATTTGAACACTTTGGTTGATAGTCAAAATAAAGCAGTCTTAAAACAGTTAACCTCACAAGATATCAAGCTAATTAATTTGTATCAAATCATTAATCAACTACAAACTAATGGTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 76476-76203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAX01000013.1 Lentilactobacillus parabuchneri strain FAM23163 FAM23163_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76475 29 100.0 32 ............................. TTAGGCTTGCTCTCGGTATCAACAGAACTAAC 76414 29 100.0 32 ............................. CTGGGGATATGACCAAGAAGCAAGCCAATTCT 76353 29 100.0 32 ............................. CCGTATTCGGTAATCATTCAGGTGATTTAGAG 76292 29 96.6 32 ..............C.............. TTAGTGAAGCTGTTTGAGTTGGCATTTTCTCT 76231 29 86.2 0 ....................A..G..TT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTATTCCCCACGCATGTGGGGGTAATCCT # Left flank : ACAGTAGTTTGAGCAGGACACTTAAATCATATTCACGTGGCCGGCCAAAGATATAGGGCTCTTTAATGGCTAAGTCTTCAACGACATAATTGATAAAACGGGCCGGATGGTTTTCCTTGGACTCCCAATCAGTTGCGATACTCAAAACGGTTTGGTTTATGTTATAATTATTTTGCATATTGGAACGTCCTTTCGAGGATGATTTCGTAGTCATCGGGGTTCGGCCGATGACTTTTTTTATTTTAGATTATAACAAAAGCGATTCATCGAAAGAAACATTTTTCTTCGATGAATCGCTTATTTTTTGGGACTTATGTCACAGCCCCTTCAGTTCATATTTGTACGGACCGCGTTTTTGTATTTGTGTTGTGGCATTTATGAATTCGTTTATAGTAAACTGTTAGTAGGATCGTTAGATAAAGGGGTAGAGTAAAATACGAACTAATGAAAAATGGTCATTTTATAATTTGAGAATGGCTATGTTTCGGGGTTTGTTTAGT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTGAAGATCCATTACTGATCAATAAAAAGAATCGTGATCTCAGGATAATTTGCTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAACTGGATTTATCCTTCAGCGTCATGAATCGCATCGGAAATATTATCAGCCGAAAAATCATGATTCATGTATGCGTCATTGCTAATCGGCAAATGCTGTTCCAGCGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAGCTAATCATTGTTCCATTGACCTGATCACGGGTAAAGATGCTTTGATTACGAGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //