Array 1 2134483-2132012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032194.1 Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2134482 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 2134421 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 2134360 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 2134299 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 2134238 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 2134177 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 2134116 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 2134055 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 2133994 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 2133933 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2133872 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2133811 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2133750 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2133689 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2133628 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2133567 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2133506 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 2133445 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2133384 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2133323 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2133262 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2133201 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 2133140 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 2133079 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 2133018 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 2132957 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 2132896 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 2132834 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 2132773 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 2132712 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 2132651 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 2132590 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 2132529 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 2132468 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 2132407 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 2132346 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 2132285 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 2132224 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 2132163 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2132102 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2132041 29 100.0 0 ............................. | A [2132014] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2153660-2151028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032194.1 Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2153659 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 2153598 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 2153537 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 2153476 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 2153415 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2153354 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2153293 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 2153232 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2153171 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2153110 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2153049 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2152988 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2152927 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2152866 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2152805 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2152744 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2152683 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2152622 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2152561 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2152500 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2152439 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2152378 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 2152275 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 2152214 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 2152153 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 2152092 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 2152031 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 2151970 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2151909 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 2151848 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 2151787 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 2151726 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 2151665 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 2151604 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 2151543 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 2151482 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 2151421 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 2151360 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2151299 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2151238 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2151177 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2151116 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2151055 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 43 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //