Array 1 49172-48473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFY010000019.1 Dickeya dadantii strain A622-S1-A17 A622_(paired)_trimmed_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49171 29 100.0 32 ............................. TCAAATTTCGTCCCGGTGGAACTGTCCTTTAT 49110 29 96.6 32 ............................A TGGACGGACGCAGGTGTGGTGTTTGGACCCAA 49049 29 100.0 32 ............................. TATCTTACGGGCCGAATCTGCGATACGTGAAC 48988 29 100.0 32 ............................. ATGGAGGAGATGGCTAAATCAGTCGGACGTCG 48927 29 100.0 32 ............................. CATTTTTGGTCGAAAGAAAGACCTGGCGGACA 48866 29 100.0 32 ............................. TCTATCGGCGACGGGTGGGGAAGGGCGTGGCA 48805 29 100.0 31 ............................. TCTGTCTATTACGAGTGCGGCGGCGATACGA 48745 29 100.0 32 ............................. GTTTTGGCTGTTTTTGGTGAGATTGAGCCAGA 48684 29 100.0 32 ............................. CCGTCACCTGTAGCGCCAGCCGGGATATCGAC 48623 29 100.0 32 ............................. GCGCAGGCGGTGGAGCGTCGCAGCCTGTTTGA 48562 29 100.0 32 ............................. CGACGACGAATTAATAGAGCTGACGGGTTATA 48501 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGACGTGCTGGCCGCCGGCGAGATTCAGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCCGCTATTCCCGAACCGACGCCGTTTGGCGACGCCGGGCACCGGGGGCATGGCGCATGAGTATGCTGGTGGTGGTGACGGAAAACGTACCGCCGCGCCTGCGTGGTCGGCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGGGTGTACGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAGCAGGTGTTAGAACTGGCGGAACAAGGCAATGTGGTGATGGCCTGGGCTACCAACACCGAATCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGGCTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATAATTTTAGA # Right flank : GTTACCTCTGCTGTTGCTTGTCGATCTCAGTTTTAACTTTATCTTTCGTTTGTTTCGCATAATCCACTCGTAACGGCTGCTGTTACCACTAAATCGTAAACTGAAAATCAACGCTTAATCGCAAACTGAAATTAACTAACTGAAAATGGAATACCCAAAAATGACAAATTCCATTCTTGATAGCCTGAGCCTTCCGGCACCGGGGGAGATTGAGGCGGCTGTGCGTGGACAAAGGGAGCTTGCTGCCTATCTCTCCACGAAGATGGAAACACAAAAAATTTCGATTCAGGATGCGGATAACAACACTCGCCAGATCGAATTACCGACGTCGTCACTGACGCTGCTGATGTCGATTTTAGGTGAGCTGACCATGGGTAATGCGGTTCAGGTTGTTCCCGTGCATGCTGAGTTAACAACGCAGGAAGCAGCCAATATTCTGAATGTTTCACGTCCTCACATGGTGAAACTTTTGGAAGATGGGAAGCTGCCTTTTCATAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 250104-251257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFY010000025.1 Dickeya dadantii strain A622-S1-A17 A622_(paired)_trimmed_(paired)_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 250104 29 100.0 32 ............................. ACATTGCCGAATACATATCGACCGGCGATGAT 250165 29 100.0 32 ............................. CGGAGAATGGGTTAAATGGCAATCACTACCAG 250226 29 100.0 32 ............................. CCACACCCAACGACACGAACACCAGCGCAGGA 250287 29 100.0 32 ............................. GGTGGTAGTAGCGGTGGACACACGCCAGTTGA 250348 29 100.0 32 ............................. GATTTTTCGGTAATTATTGTATTTCTATTGTA 250409 29 100.0 32 ............................. AGAGAAAGCAGAAAGAATTATAAATGCTAATT 250470 29 100.0 32 ............................. AACCTGAGCAAAAAGGATTATTTGCTTAAGAT 250531 29 100.0 13 ............................. GCGCTTAGCTTCT Deletion [250573] 250573 29 75.9 32 TC..CA.TTT................... AACCGAGATACATTCCAATAAAAGATTGGCAG AGGT [250580] 250638 29 100.0 32 ............................. TTGTGGAAGATTCGGATGCCGTTGCCGGCATC 250699 29 100.0 32 ............................. CGCCAGGCGGAGCGCTTCGCTGCCTTTGAGTC 250760 29 96.6 12 .............T............... ATGGTTTTCTGA Deletion [250801] 250801 29 79.3 32 ...CC.TGT....T............... CGCTCCCGACCGCTGGCAGAGAATACGCTTAA 250862 29 96.6 32 ..A.......................... TCCGTGAGGAGGAGGGTTATGAGCGCGTAGAT 250923 29 96.6 32 ..A.......................... GAGGCCACGGGTCAGGCCAATACTGCACAGCG 250984 29 100.0 32 ............................. TGGGCGTCCCTGTTCGTGCAGCAGGACAATGG 251045 29 93.1 32 .G..........T................ CCGTCAATTGCATCTATGACCCGACTAACGAG 251106 29 96.6 33 ..A.......................... CGGAGAATGCAGGGGCGGCACCGCAAGCCGCAG 251168 29 93.1 32 .C..........T................ AACCCGCTAGGGACGTTCAAACAGCATGAGAA 251229 29 89.7 0 .........A.................GC | ========== ====== ====== ====== ============================= ================================= ================== 20 29 95.9 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTGAATAGAGGCGGAAAATCGGCAAGCGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAGATGTTTGACGCGGTATTCCCATTTCAGCGCGGTGGAGCGATCGCCCGCCACGCAGTGATACACCAGCGTCAGCGGCCCTTTGCCGCGCAACGCGCGCGCCCCTTTCCCGCTCTGATGCTGTGCCAGTCGCCGCGCCACGTCGGTGGTGATGCCGGTGTAAAGCCACCCGCTGCCGGTGCGCAGCAGGTACAGAAACCATGGGGTTTCACTGTTTTTCACGCCATTTCCTTTTCGTGGTTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCTGGCGGTAGAAAAATTTGAGGTTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTAAAAAAGTCGGTGGAATTTTAGAGGCTTTAAAAATCATTATAAAACAAGTATATACTTTTAGA # Right flank : CCGCACAATCCGACGCGGTGATTCGTTCTTTCGTGTGATAAAATTCACATAATTGGTGATTTGTGTGCATTTAATTTCTTTTTGTTGTTAATAAAATCACATAACAGAGCGCGTTATCAGGGTGAAATGCCCGTAAACGCGATAGTGTGGCTAAGAACGGGAGTTTTGTATGAGTGATTTAACTGCGGCGGCACAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGCCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCTATTTGTATCTATCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGTACGCCGGATGTCCGCATCGCGACCGTGACCAACTTCCCGCACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTATGGCGCCGACGACGTAGACGTGGTGTTCCCCTATCGGGCGCTGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160308-160695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFY010000001.1 Dickeya dadantii strain A622-S1-A17 A622_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160308 28 96.4 32 ............A............... TTGACATCGACGCAATCGAGATTCAGCGTTTG 160368 28 96.4 32 ...........C................ TGATGGCCGACAGGCTGATATGAAAGACTATG 160428 28 96.4 32 ...........C................ AGCAGCTGAGCACCGGCAGGGCCAGCGTAGTT 160488 28 100.0 32 ............................ GGCGCCCGGAGTGCCGGCAGCGGCCAGGGAAT 160548 28 100.0 32 ............................ TGAAGTTGGACATCGCGTTGCCGCCGGCGCTG 160608 28 100.0 32 ............................ AACAGAATGCCGCACCGGCGATCGCACCAACC 160668 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGTCACGGAAACCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCAGCGCCGGCGCCGCCGGCCAGCCCCAATAACAGAATCAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTAGCATGCCGTTTCTACGGCCGTCGGTTTTGACCTTTTTTTTTCGCTTCGTTATAACTCATTGATTTTAAATGACGATAATGATCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCCCGCTTTCCCTTTCAAAATCAGGCAATAGGCGATAAATTGCTACG # Right flank : ATCTATCCATTTGTTTTTCCGCTCTACGCCGTTATTCACTGCCGCACAGGCAGCGGTTGACCGGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTTGGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCACGTGAACCTCTCCTTGTCGTGCGTGCGATGAAATGGCAGAGAAACGACACCGTTTATCCCGCACGAAACCACTCACCGCCCCACATAAATCCGACAGCAGCAAAGCCCTCCGCTGTTTACCAACAGCCCCTTCCCCTTATTCCGCCGTCAGAGCCGACACCGCCCCTTTTCGCTTTTTGATGGCATAGCCGGCGGCCAGCGCCAGCAACCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 166425-165856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFY010000001.1 Dickeya dadantii strain A622-S1-A17 A622_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 166424 28 100.0 32 ............................ ATAGAACAATCGACTATTTTTCACGATTATCT 166364 28 100.0 32 ............................ TTCATTGAAAATGCTGCCGTCGTCGTTGAGCA 166304 28 100.0 32 ............................ AACACCGGCATTCGGTTGCCATGCAGACGATT 166244 28 100.0 32 ............................ TCTGGTGGGCGCATGCCGACGGCACCGCCGCA 166184 28 100.0 32 ............................ ATGAATATGTCCATGTTGCGAGCGCTACAGCG 166124 28 100.0 32 ............................ GCATCCGATGCGGACAAAAAGCGGACTAGAGA 166064 28 96.4 32 ....................T....... GTCGGGGAACACGACCACCCGCGCGTCAGCAG 166004 28 100.0 32 ............................ GGCACTACAGGCAGGGATGGGGCGGCGAATAG 165944 28 92.9 32 ...T.......C................ GGTTCGAGTCCGGCGCTATTCATCCCGCCGCT 165884 27 78.6 0 ...........CAC.........-..CC | GG [165861] ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGCGCGAAGCACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACGGCCCATTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGATTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTAAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGACGATTTTTCTTTAGCAATCAGGTGATAAGCGAATGTTCGCTACG # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTTGGGAGCGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATAAAGTTATAAAGAAGCGACACCGTTTATCCCGCACGAAACCACTCACCGACCCAGCATAAATTCGACAAATGATTCACTCACCAGCCTGACATAAATTCGCCAATAACCAAAACAACCCCGCTGTTTGTCAACAGCCTCAGCCCCGCGGCGGGCTTCGCCGTTTCCCGCACAGGAAAAAATCCCCCAACCGTTACCGGCCGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 174996-175501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFY010000001.1 Dickeya dadantii strain A622-S1-A17 A622_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174996 28 100.0 32 ............................ GCTGGGATAAGTATTGATCCATATATAGACCA 175056 28 100.0 32 ............................ GATCTGCGTTACTGAGTGGATGGATGAATGCC 175116 28 100.0 32 ............................ ATCGTGACAACAAACTTCAGCAATTCGACGCC 175176 28 96.4 32 ................A........... CCGCCGCCGATCTCATGCGCGCACCGAGTAAT 175236 28 100.0 32 ............................ CTCAAGCTCCATTTCGCGGAACGCGACGATCT 175296 28 100.0 32 ............................ AGAACAGACGGGTGATGGGGTTATAAACCTCG 175356 28 100.0 32 ............................ GGCACACAACCGCCATTAACGGCCATCTATGT 175416 28 100.0 30 ............................ TGTTCGTTATCTGGGTACGAGCAGGTCGGT 175474 28 67.9 0 ...........TAC.......A.CCCTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTTACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAGCGACTGATTCCCTTCTTCGGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAGAACGCAGGCTAATAATTAACTGAAAAATACGTAATTCACTGTAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCCATACCCTTTTTTCAACCGTCTTTTTCGGTATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACG # Right flank : CCCCGGCCGGGGAGGGATACGTCGGTCAGAATGACGTCCAGTCGTCATTGGTGCCGGCGGTGGCGGCGGCACGTTTTTCGGTTACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGCCGGCTGGCGGGCCGACGACGGTGCGCCGTTGCCGCCCTGTTGCGTCAGGCGGAAGGCGCTGACCGCTTCGGCCAGCAGCGACGCCTGCGATTGCAGCGACAGCGCGGCGGATGCCGACTCCTCCACCAGCGCCGCGTTCTGCTGGGTGGTGGTGTCGATTTGCCCGATCGCGATGTTGATCTGGCTGATGCCGTCGCTCTGCTCATGGCTGGCCTGCGAGATCTCGTTGATGATGCTATGCACATCTTTAACGTGACCGGTTAAGCCATCCATGGTGGATTCGGCGGTATCCACCAGTTGCATCCCTTCCTGAATCTTGTCCACCGAATCGTCGATCAGTTCCTTGATCTCTTTGGCCGCCGTGGCGCTGCGCTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //