Array 1 1165377-1166336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXL010000001.1 Victivallis sp. Marseille-Q1083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================= ================== 1165377 36 100.0 31 .................................... CAACTCCATACAATACTTTGTCAAACCGTAA 1165444 36 100.0 31 .................................... ACAGCTTGCCAACTATATTCCGGATGCAAAA 1165511 36 100.0 30 .................................... GTTTCACTTATTATCTGGACGACCGGCAGT 1165577 36 100.0 31 .................................... ATCGTGACACGGAGTTTTCGACGCCGCGAAA 1165644 36 100.0 30 .................................... CAAGGCGACAATGGGAAGACCGTCTGGCAA 1165710 36 100.0 30 .................................... TTCTCCGGTCTGATGATTGGTCAAGGTTCC 1165776 36 100.0 30 .................................... GGGTGCCGGCATTGGACGAATCCCCGAAAA 1165842 36 100.0 30 .................................... TCAACGGATCGAGTAAAAAACTGGCGGACG 1165908 36 100.0 30 .................................... CCTGCAACGGCGTACCGAAATACCGCGAAA 1165974 36 100.0 30 .................................... CCTGATCTGCGGTATGGAATATTCTGCTTC 1166040 36 100.0 31 .................................... TTGGAACTTAAACCATTTAAGGCCACATTGC 1166107 36 100.0 29 .................................... GAATGGAACGCTATGGCCGGATTGTATCA 1166172 36 97.2 93 .................................T.. GGAATGTTTACGAAGTAGCTTTTACATGCGAATATAGCTCTCTTTAAATCGACAAGATCCTCCTTGACTTTGTGTGGCTGACGCGTTATAATG 1166301 36 75.0 0 ...A.G.TG.T...........T..T.......G.T | ========== ====== ====== ====== ==================================== ============================================================================================= ================== 14 36 98.0 35 AATGTAGCACACTTTTCAAACTCTACAAGCCCCAGC # Left flank : AACCAGTTGGCTGAGTCGTTTCAAAGCGGAGAAATTATGTTACGTTACAATTGAAGATGATTTCGGAGATAAAATCCGTGTGGCTTATGGTTATGTTTGATTTGCCGGTGGTCACCCTTGAAGAAAAGCGGCAATACACGCGTTTCCGCAAATATCTGGTACGCGAAGGTTTTTTGCAGCTGCAATTCTCAGTTTACGCCAAATTCTGTTCCAGTAGAGAAAATGCCCAGAAGTATTATAATTATCTTCAATATGCAGTCCCTCCCGGAGGAAAAGTCCGGTTGCTGATGGTAACCGATAAACAATTTGGCGATATGGTTTCGTTATACGGCAAAAAAGTAGAAGAAGTAGAAAAGAAACCCGAACAACTTTTGCTTTTCTAAAAGACAAAAGTTATGCAAAAAACTTATCTTTGGTGTAAATCTTACCGGTTTTTCGCTCTTTTTTTAAAGGCCTTCTACAAAGTAATTTATTGCCTATCAATTTGTTGCAAAGATTAC # Right flank : TTCATTTTAGAAAGGGAGTACCCGGTTCATATTGGATTGAGATTATTTCAAAGAAATTCTGAATCACAAGCGCATGTTGTTTCAGGCAGAGGCAACAGATCTTTATGATCGGTTCCCGGCCAGGATTCCATTGAAAAACAAGGTGCCACCATCAGCGAGGAACGAAAAAATGTGTAGAAACCTATGCGGTAAAAAGATTCAGAATCAGATCATTCTGACGCTTGATGTCAATCTGATTCTGCAACGGCTTCATGCGCTCGGTATTTCCGAACTGACGGCGATTCAGTCGCTGTGTCTGCTCAACGGCGATTATATCAACCTGGAGTGCCGGCTGCCCAACGGTGCCGTGGGAAAACTTCTTGACGACGATAAGACTTATTACGCTACGCAAGTGGAAAGAATCGGCAGCGACCGCTGTTATGGAGTTGCCGCCGACGAACAGCAGATCGCAGTTTACGAATACGGCAGCAACGGCACGGATGCCGTGCTCGTCGCGTGGG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTAGCACACTTTTCAAACTCTACAAGCCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1175291-1179653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXL010000001.1 Victivallis sp. Marseille-Q1083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1175291 28 100.0 33 ............................ CGCACTGGTGACGCTGGCAGGCGGATCTACCAT 1175352 28 100.0 33 ............................ CACCAGGTAGGGCACCTCTTTGGACCGGTTGAC 1175413 28 100.0 33 ............................ TAGATCCGCGTTGAATAATTCTACAGATGATTT 1175474 28 96.4 33 .C.......................... CACCGGATACAGCAGCGCGGCAACCAACACCGG 1175535 28 96.4 33 .C.......................... TCCACCGGGTGAAACTGACCGTTTTCATCTTTT 1175596 28 96.4 33 .C.......................... TCTGGCGCTGCGGCTTGAGCGCACCGGCCGGCT 1175657 28 96.4 33 .C.......................... CTGCTTTGCAAGTTTGGGCTAGGGTCTATCGGG 1175718 28 96.4 33 .C.......................... CGACGAAGCGGCCGCCCGGCTCTGCGGCCTGAA 1175779 28 96.4 33 .C.......................... CATAGTCATACGGGCAGCTATCAGCCGCCTCAA 1175840 28 96.4 33 .C.......................... CAGATCCTCCGGTGGCTCTTCGAATTCCAGGTT 1175901 28 96.4 33 .C.......................... CTTCATTTTTCCGATCCTTTCGGTTATGATTTT 1175962 28 96.4 33 .C.......................... TCCGCGTTTCGGTCCCAAATCGGCCAGGACGTC 1176023 28 96.4 33 .C.......................... CCTTTCCCGCCTCCAGCGCAATGCTGGTCAAGC 1176084 28 96.4 33 .C.......................... TGCGGGTATAAAAGCGCAATCCGTCCCGGTCGC 1176145 28 100.0 33 ............................ CGGGATGTCGTCGTCCGGATCCCACGGCTGCAC 1176206 28 100.0 33 ............................ TGGGAGCAGATGATTTTTCAGCGGCACGATGTT 1176267 28 100.0 33 ............................ CAGTACACCGGCATCAGAGACCGAAACAACAAA 1176328 28 100.0 33 ............................ TGGCAAAAGTATTGCAAGCCGCCGACAGCGGCG 1176389 28 100.0 33 ............................ TCAGGCACCAGCATCAGCTCCGCCTGTAGCGGT 1176450 28 100.0 33 ............................ TTGCTTTTTTCATAGTATATGGTTCTCCTTGTT G [1176467] 1176512 28 96.4 33 .............G.............. CAACGCGCCAGATTGGATAACTGCCTGTGGAGA 1176573 28 100.0 33 ............................ TTCTGATTCAATATACTTGTCCATTTCATTCCG 1176634 28 96.4 33 ........................G... TGGGTTCGTTTTTCTTGATTTTAACTGCATAGA 1176695 28 96.4 33 ........................G... CGAGACGGAATTTTACTCGATGAAGAGCGTCTA 1176756 28 100.0 33 ............................ TCATAGACGTCATCCATGCCATCCGGCGGGCTG 1176817 28 96.4 33 ...........A................ TTGCACGCTCCGGGTAGTTGCCGTGCCGCCGGA 1176878 28 96.4 33 ...............C............ TTGCTATGTAGTCATACGGGCAGCTATCAGCCG 1176939 28 100.0 33 ............................ TTGCCGTTTTCATCCGGCGGCACGTGATTGATC 1177000 28 96.4 33 .....................A...... TTAAATCTATTGCCAAAGACACCGATTTTTTAC 1177061 28 96.4 33 ........................G... TCAACAAGCCGTCCGGAAAGAGAATCCAGCCGG 1177122 28 96.4 33 ...............C............ TGGTGTGACTAGTTCTACTGGTGTTTCTGGTTC 1177183 28 100.0 33 ............................ TGCCGGAGTAGCGCCATGCACCGAAGAATAATT 1177244 28 100.0 33 ............................ TGTCTGCTGATCGCTTTGCAGAATCTTGTTGCC 1177305 28 96.4 33 ...............C............ TTTGTGGCAGCAGCTGGCGACCGATGCGCTGGC 1177366 28 100.0 33 ............................ TATAGGTCCCAATCAAAGCCGGGAGCTGTGATA 1177427 28 100.0 33 ............................ TTCTGCTTCAAACCGGCAATGGAAGCAAAATCA 1177488 28 100.0 34 ............................ GCCGCTGCCGGCCGCCAGCGGCGCCCCGATCCTG 1177550 28 100.0 33 ............................ TTCGTCCGGGAAACCGAACCGATCATCCTTGAC 1177611 28 100.0 33 ............................ TGCCGCTCCGAACGGCATGCTCGATTTAAAAGA 1177672 28 100.0 33 ............................ TACCAAGACAACGACGGACCAAAACGCCGCGAT 1177733 28 100.0 33 ............................ TTCGTCCGGGAAACCGAACCGATCATCCTTGAC 1177794 28 100.0 33 ............................ CAAACCCGATCTATAGCGGCAGTCACCTCCGTC 1177855 28 96.4 33 ........................G... CTCGTTTTTATACGGTGTGTTGTACTCCGGCAG 1177916 28 92.9 33 ...............C.A.......... TGTCATCCAATCGACTTCTTGTAGACGTTCCGA 1177977 28 96.4 33 ...............A............ TCAGGACTACTTACATTGAGGACGAAAACTAGG 1178038 28 100.0 33 ............................ CTCAGATGCGATTTGAGTTTTCTCATAGCAACA 1178099 28 100.0 33 ............................ CTGGTTCGGCGCTTCCTTCTGCATCGCTTCGAT 1178160 28 100.0 33 ............................ TGGAAACGAAGTAAAAAAAGCCATTGTAAAAAT 1178221 28 96.4 33 ....................A....... CTCTTTGAGTCAACTGCTGGCGATGGAGGCGAT 1178282 28 100.0 33 ............................ CTGGTTCGGCGCTTCCTTCTGCATCGCTTCGAT 1178343 28 100.0 33 ............................ TGGAAACGAAGTAAAAAAAGCCATTGTAAAAAT 1178404 28 96.4 33 ....................A....... CTCTTTGAGTCAACTGCTGGCGATGGAGGCGAT 1178465 28 100.0 33 ............................ TGTCTGATGTTTTTCGGCGCACTACCAAGCAGA 1178526 28 100.0 33 ............................ CAGCAATGACCAGATCGTTAGGAGGTCAGCATG 1178587 28 100.0 33 ............................ TCTGCGCTTTGTGGTCAACTGCTTTCTGGCGGC 1178648 28 92.9 33 ......T.................G... CTCATATCGAAAGGAAAGAAAAATGAAGAAAGA 1178709 28 96.4 33 ........................G... TTTATAAAGCTGGTGGTGGCAAAATGACTGGCG 1178770 28 96.4 33 ........................G... TGTAACGAGGCTTGGTTGGCAGCCTTTGCTGAA 1178831 28 92.9 33 ...............A........G... TGTGTATGACTCCGCCGATGTTGCCGGTGAAGG 1178892 28 92.9 33 ...............A........G... CGGCTTCGACGGAATACCGCCGGAAAGGAGCAA 1178953 28 92.9 33 ...............A........G... CCTGGTTCGTTGCCCTGCAATATTGGTTGGACA 1179014 28 100.0 33 ............................ CAGGTACCAGCCGGTGCTGCTGAAACCGAAATA 1179075 28 100.0 33 ............................ TTCTGCTTCAAACCGGCAATGGAAGCAAAATCA 1179136 28 100.0 33 ............................ CGAATGATGATATTGAAAGCAATGCCGAATTTG 1179197 28 100.0 33 ............................ TGGTGGACGCTTTTAATACCAGCACGAACGAGC 1179258 28 92.9 34 ...............A........G... TCAGGGGTTGGACGCGCGGCTGGTGACGCCGGAG 1179320 28 96.4 33 T........................... ACGATCCGCAGCGCGTGGCGACAATCGAAGGTG 1179381 28 96.4 33 T........................... TGGATAGAGTTGCGTCAAGACATGCTTCACGGC 1179442 28 92.9 33 ...............A........G... TCCTGCAATTTGCGGCAAATTTTATTGTGTGAA 1179503 28 92.9 33 ...............A........G... TCTGTTGTCATCATCTTTTGAGCAGTAAAAGAA 1179564 28 96.4 33 ...............A............ TTACTGCGTTCAGAAAACAGCGGTAAATCCCGA 1179625 28 78.6 0 ...................A..AAGAG. | A [1179643] ========== ====== ====== ====== ============================ ================================== ================== 72 28 97.5 33 GTCTTCCCCGCGCACGCGGGGGTGTTTC # Left flank : GAGCTGGTCTTTGATCTGGCATTTTCCCTGACGCGTGAGCTGGGAGGAATATATGATCGCCAGCGGGCGATTTCTGAATTTCGCCGGCGGGTCATTGATTATGAGCTGATGAAAAAATGCCCGGCAGATCTGATCAATTTACTGGGCTTGAAAAAATGATCGTTATAGTCGCTAACTCGCTTCCCGACGCAGTACGGGGCAAATTGAAGCTGTGGTGCATAGAGCCGAAGCCGAATGTATTTGTTTCAGGCGTCAAAGATCAACTGGCGCGGAAAGTGGTTGATCTGGTATTGAAATACTGTCCGCCGGAATCGGGTATTTTAATATTTCTTGAAATCTCGGAACCGCCGTTTTTTCAAATCTTTGTCAAGGGAAATCCTTGTAAAAACATTTCCAGCCTATCCGGATTTCAACTGATCTGTGAAGAAAAGTCACAAGAGGTTGTTTGACAATTTATCAATATATTGTATATCAGTGCGGGTTCCCAACAATATGTTCCA # Right flank : CCCGGTGGAGGAGATTTTAAGCGAACTGTCGTCAATTTCCCCGTGTACATGGGAACTCGAATTCAGTTTCTACCTTAAAAAACAATGAATACAAATATGAAAATAGTCGAAATTTTCAATTTTCCGGATAGAAAATCTGCCAAATGCAATGATCCAACTGGAAATGTAATGACGGACGACTTATATTGATACATGGAGTTATCGACAACAATCCGATCGAGATTGTCTTGGAAACGCAGTTTAACAAAAGCATGATTCAGGAGACGGGTTAACCTATGCTTATGCCCTCCGCCCATGACCATTACCGGCTGAAAATCATCCCGGAGCGCTGACCGAAGATGCCGTTGCTCGCCGTCAACGATTTGAAAGTTTATTATCCGGTGCGTACCGGGCTCTTCGGTCGGCCCGGGATGGTGCGTGCCGTCGACGGCGTCAGTTTCGAGCTGGAAGCCGGCGAGACGGTCGGCCTGGTCGGGGAAAGCGGTTGCGGCAAAAGCACT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1360306-1358973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXL010000001.1 Victivallis sp. Marseille-Q1083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1360305 32 100.0 32 ................................ ATAAACTCCTGATGTCTTTCGAGTTCGGATAT 1360241 32 100.0 32 ................................ AAATAGGTTATAAACGCCTCCCCATGTTTGTT 1360177 32 100.0 33 ................................ AGAACAAAGAAACAAGTTATTGCTATCCATCTT 1360112 32 100.0 33 ................................ CCATGCAGTATGCCTATTGGTATATCCAAGATT 1360047 32 100.0 32 ................................ TTTGATGTTCGCATCTATTATTTAAATCGTTT 1359983 32 100.0 33 ................................ AACATCAGTCGGATCAATGTTCTTGTCTTCGGA 1359918 32 100.0 33 ................................ TCCGAATGGATGGTCAAAGATTGTTGAAATCTA 1359853 32 100.0 32 ................................ AATCAGCGGCACCGTCCATTCAAAGGCCCGAA 1359789 32 100.0 36 ................................ ATCGGGATTTTTCGGGTGGCTGGTCGCTTCCAGCCA 1359721 32 100.0 34 ................................ AGACGCCGGCGAAAAACCAAAATACATTCATAGC 1359655 32 100.0 34 ................................ TGTTTTACTAGAATGCCTAATACCAACGGTATTA 1359589 32 100.0 33 ................................ CGTTAAAGTTGGTAAACAAAGGCCGTTTATCCA 1359524 32 100.0 34 ................................ CATTTTGTAATGAGTTTTCAACACCCGATCGAGC 1359458 32 100.0 33 ................................ ATTGTCGCTCACAACTTTACGATTAACCAAATC 1359393 32 100.0 32 ................................ TCCGGTGGTCATGTCGGTAATTTCCAGCTCCA 1359329 32 100.0 33 ................................ AAGGAATGGTTCCCGACGACTTCGGCCGAATTT 1359264 32 100.0 33 ................................ CACTACCGACAATCCCGCTACCCCGGCCATGAA 1359199 32 100.0 33 ................................ AGTCAAGCTGTATGCTGGTGGGGACATCTTATC 1359134 32 100.0 33 ................................ ATGTTGCTCCTTGACTTTTCTGGTGTTAAATAC 1359069 32 87.5 34 ..........C........G....G.....G. CGGCAGGTGCTTGGCGGTGGCGAATAGCGGAATA 1359003 31 75.0 0 .C..A.....-..TT....G...G....C... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 98.2 33 CACCCAGTTCTCGCCTGGGTGTGAATTGAAAC # Left flank : GTATGTTCCTTATATTTGGAAGTGAGGTATTATGCGGGTAATCGTCAGTTATGATGTCGCGGTCAACAGCGAAGGAGGTAAGCGGCGTTTGCGCCGGGTCGCCAAGCTTTGCAAAGATTACGGTTTGCGAGTACAGAATTCTGTTTTTGAGTGTGAAATCGATTGGGCCGGTTTTCTGGAATTGAAAGCCAGATTGCTGAGAGAAATAAACATGGGAGAAGATAGTTTGCGGATTTATAATTTGGGTGCCAAATGGGCCGGTAAAGTGGAACATTTTGGCGTGAGAGCAATTGTCGATCTGGGGCGAGATACTTTATTGCTGTAATGTTTGAGTGCGAAGCTCAGGTCAGCGGGACGTTTGAGCTGAGCTTCGCACCTTTTATCAATCAAGGAAATAACATGCTTTTATTGATTTTATCTACATTCCTTTTTTCAATTTTCGAGTGATTCGCGGAAATGAGTTGTTTGATAACTGAGTCTGAAAGAGTTATAATATTGGC # Right flank : CGGAATTGTGGCGGATTTCACCGTCGAACTGTATGCAAATGCGTCGGGTTGCCGGTTTTTGGCGGCGACAAGGGAAAAAAATCGACTTTTTTTCAATTTTTTTGAATTGAGGTATTGCTTTTTGTTAATCGATTTACTATACTATAATACGTACGATGGTAAACGGCCGGTTTCGGTTTACTGAATTCAGGACCGGAAAAAATAAGATTGCGAAGGTGAACGATATGGCGGAAACGATTCGAAAAACTTCTGGTAATCTCCGGATTCGCGATATCGCGGAACTGGCCGGCGTGTCGACGGCGGCAGTATCGGCGGTGTTGAACAATCGCCGCAAAACCAGCGATGCCACCCGGCAGCGCGTACTGGATATTATCGGTAAATACAATTATGTCCCGCAGAGTGCCGCCAGAACTTTGTCCGGCAAACGGACGTTCCAGATCGGTTTTCTGCTTTCCTGCAAGGTGACGCTCGGGCTGGCCAACAATTATTTTGCGACGATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCCAGTTCTCGCCTGGGTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 4 3825951-3826142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXL010000001.1 Victivallis sp. Marseille-Q1083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ================================= ================== 3825951 42 100.0 33 .......................................... GAGCCTCATGATTGGGTTGTTCTTCTATCTGAT 3826026 42 97.6 33 .......................................C.. TTCAGTAGTGATTGGACTGAGCTTCTATGTAAT 3826101 42 95.2 0 ..........T...T........................... | ========== ====== ====== ====== ========================================== ================================= ================== 3 42 97.6 34 CAACCGCAGTACGCGTCAAGGTTTGATAAATGGAATGAGTTG # Left flank : CTCCGTCCTCACGTACGCCAAGTTCGGCCGCATATCCGGAACAGCTTAACGCGCCGAAGTAAGCATCTGGTTTTAAATAGCTCTTCCGGTACCATGATCGCACGGGATGGAGACCTCTGAGGCTGCCTGTTTACCGGGAAGCTATACAGGGATATGGAAGGCCCCAAACGGCATTAGCCTTATCTCCCGTTAGCAAAAAACAAATGGAATATCGAGCAAATGACGTTCGAAGAAGTACAACAAGAGGGAGTATCATGGATACATTCAAAGAGAAGCTGAATCTATTATGGGGAGAAGTTCTGGTTCCGGTCTACTTGGGAGAGATCGAACAAGTAGCGGTTGCATTCCGTAACGGTGACTTTGATCACCTCACCTCCCGTCCGGATAATGATCTCATGACTGAGCTGGTTTACATCTTCACCGCTGAACCGGAATGGCTCCAATCATTCACACATTGGGACTGGTTTGAGGCAAGAGACTGGGCGCAGCTTTTAAGCAAG # Right flank : GAACAGTAGTGATTGGGTTGAGCTTTTGGGAAGGCAGCCGCAATTTGCAGATAAGGTTTCCGACTGGAAGGGACTGAGTTCTTTCTGGCATCTCATTGTTTCGGAACAGCCGCAACTATATCCTTATTTTGACCAGAGGGTAATGAAGTTACTACTGGGATGGGCTTGGGGGTTTGTGTTACAACAGCAACCTCAGTTGGAACCCCATTGCCCATGGGAGTTGTTCACAGAAAGCGATTGGAATAATTTTACCGACAAATGCTCGCTTTTTGTGGAGAAACTCAAGTTGGAGGTACTGCACGCAGAAGCCTGGAGTAAGCTGTTACCCGAACACCCGGAGCTTGCCGATCGTTGTTACTTGTGGGATGAGTTCTCGATCTCCTATTGGAGCTCCCTCATGGCTGCACAGCCACAATTCATTTCGAAGTATGAAGAATATCATAAATGGAGTGAATTGAGCGGCAGTGACTGGGCGAGGGTTCTGAGTAGCCAACCTACCT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAACCGCAGTACGCGTCAAGGTTTGATAAATGGAATGAGTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //