Array 1 6834-5950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOR010000017.1 Cronobacter malonaticus strain MOD1_GK1355 cmalGK1355_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6833 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 6772 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 6711 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 6650 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 6589 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 6528 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 6467 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 6406 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 6345 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 6284 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 6223 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 6162 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 6101 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 6040 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 5979 29 93.1 0 ...........TT................ | G [5958] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117867-116127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOR010000016.1 Cronobacter malonaticus strain MOD1_GK1355 cmalGK1355_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117866 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 117805 29 100.0 31 ............................. CTGCCGCGCAGCACCGACAGCGCCGGTACAC 117744 29 100.0 30 ............................. TTACCGTATTGACGGCGACGCATTAATCGC 117683 29 100.0 33 ............................. GGACTCGCCCACCCATTTGGCCACCGCAACCAG 117622 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 117561 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 117500 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 117439 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 117378 29 100.0 33 ............................. GCACGAGGACGAATACGTCTGCTACGTGTACGT 117317 29 96.6 31 ..A.......................... CCGATATCTCTGATTGTTACTCGTCGCTGAA 117256 29 100.0 30 ............................. CGTCCTGTGTGTGGGCGTTGACACTGGCGG 117195 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 117134 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 117073 29 100.0 31 ............................. CCAGGACATGAAAGCTGACGCGCAGAAAAAA 117012 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 116951 29 93.1 33 ..........T.T................ GCACCGCATCGACACGCCGACTGCGCAAAAAGA 116890 29 93.1 33 ............T.....A.......... GGACGAATTATGGAACGTAAGTTTCTCGACTGG 116829 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 116768 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 116707 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 116646 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 116584 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 116522 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [116517] 116460 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 116399 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 116338 29 96.6 31 ............T................ CTACACCCGAATCTACCCGAAATGACGCCGA 116277 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 116216 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 116155 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //