Array 1 15175-18742 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQT01000018.1 Alcanivorax gelatiniphagus strain MEBiC 08158 ALTA_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15175 29 100.0 32 ............................. GATGCATGGCGTTTGAAACCGACCAATCGGAT 15236 29 100.0 32 ............................. CGAGATTGCCGAAGCTGATGGTGTCCTCAGAG 15297 29 100.0 32 ............................. GCCCGGACCGATATTCGGGAGTGCCGATAATG 15358 29 100.0 32 ............................. CGCCCCCGGTGTAGGCGTAGGCGGTCTGTTCG 15419 29 100.0 32 ............................. CTCTGACGCCTGATAGGGTCCGGAATCAGTCG 15480 29 100.0 32 ............................. GCGCACTGAATCGCGTCCATATTGTCGGAGCA 15541 29 100.0 32 ............................. GCTGATATCGGCACCGGAGCGGTTTGTTCTCA 15602 29 100.0 32 ............................. GGGGCATTTACGAAAGGGGAAATTTCCCATTT 15663 29 100.0 32 ............................. TCATAGAGCTGGTCGGCGGATAGGGCCGCCCG 15724 29 100.0 32 ............................. TGGGCCGTCGATATGGGCGAGACGCTGCTGGT 15785 29 100.0 32 ............................. GATCAACGACAAACAGGTGTCAACACCGGCAA 15846 29 100.0 32 ............................. ACCGCCAGGACAGGGAGCACCCAAAAAACGCG 15907 29 100.0 32 ............................. CGGTTTGCTGTCGATGGTTCCGATGAACGACG 15968 29 100.0 32 ............................. ATTCCGCCAATGAATGGCGCCGGTCTCGCGGC 16029 29 100.0 32 ............................. CCGGCGCTTTCGTTGGTTCGTTGGCTGTGGTC 16090 29 100.0 32 ............................. GTCTGGGCGACTGTCAGCAACGCGATCCCGGG 16151 29 100.0 32 ............................. GCCCTGTAACCGAAAGCATGGGCGGCGCCCCA 16212 29 100.0 32 ............................. CGGCGGGCTGGTAATGGCGCTGGTCACTGATA 16273 29 100.0 32 ............................. CCGTTCCGTCGGGTCTGACCGCGCTGGAAACG 16334 29 100.0 32 ............................. AGGTGCAGACGATGAACACCTACATTATCACA 16395 29 96.6 32 ............................A GGTGGCGCCCTTGTCATACCCGGATATGGGGC 16456 29 100.0 32 ............................. GCCGTGGATGTGTTCAACATGGATGACAGTTT 16517 29 100.0 32 ............................. CAGGCGCCCCAGGTGGCGGTGCCGGAGGCTCT 16578 29 100.0 32 ............................. CGGCGCAAGAGTGATGGATGACTATTGCGCGA 16639 29 100.0 32 ............................. TCCCGGCCCGTGTACTACCGTGGGATCCGTGA 16700 29 100.0 32 ............................. ACGGTTGATCATGGCACGCGGAGCCGTTCGGG 16761 29 100.0 32 ............................. TTGAGCGAGCGGAACGCTCGCAGGATTCCGAG 16822 29 100.0 32 ............................. GTTTCATGTTGGGGCGGCGCGTTTGCGCAGTT 16883 29 100.0 32 ............................. ACGATGGCCAAGAGGCCGTAGGCCGGCCAGCT 16944 29 100.0 32 ............................. GCTGAAGAGGTTGCTATCGGCGACATCCCGGA 17005 29 100.0 32 ............................. TCTTCAAGCGGCTGCCGGAGAAGCGGAAATTT 17066 29 100.0 32 ............................. TCAATGCCGATCATCTTATTACGTTAACGCAT 17127 29 100.0 32 ............................. GGTCTGCCTTACATGGAAATGCGGCTGTACCG 17188 29 100.0 32 ............................. GGGCAGCCGGAGAAGCTGGCCGGCACAGGGCA 17249 29 100.0 32 ............................. TCGAGAAGGCCGCCAGCGAGCCCAAGATGCGC 17310 29 100.0 32 ............................. TTCCAGACCGAACGCTATGGCGATCAGCCGTA 17371 29 100.0 32 ............................. CGCCGGGGATTTCCCCGGACACCTCTGATTAT 17432 29 100.0 32 ............................. AAAACGGAAAAGGCCACCAAGGATTAACAATG 17493 29 100.0 32 ............................. CTCGCGGGGACAAACATCCAGATGCTGCCGGA 17554 29 100.0 32 ............................. TTGCCCATATCATTCCTCCCTGCCGCTCTGGG 17615 29 100.0 32 ............................. CTGTTCGGCCAGCGGAACAGTGCGCAATACGT 17676 29 100.0 33 ............................. CCTGACCAGCAATGGCCGGGCCTGTACAACCGC 17738 29 100.0 32 ............................. TAAATGCACCCAACGGGCAATTCTGAAAAATA 17799 29 100.0 32 ............................. GCCTGGAGGTGGCCCGGGCGCAAACCGGGGAA 17860 29 100.0 32 ............................. GGGTTGTGTTTGAGTGGGAATGCAGCTGCGAG 17921 29 100.0 32 ............................. CACACAACGGCGGATCGAACGGCGCCGCGACC 17982 29 100.0 32 ............................. GCCAAGTACGCGCCACTGGAAAAGATCAACGA 18043 29 100.0 32 ............................. TGCACGACTGCCTGCAATGTTTCTCCGAAGAT 18104 29 100.0 32 ............................. GCTGCCCTACATGGAAATGCGACTTTACCGGG 18165 29 100.0 32 ............................. GTCGTTCGTCAGGATCACCATGGCCTTGCAAC 18226 29 100.0 32 ............................. GCTCCGATCCTACCGGCGAATAGGGCCGATCC 18287 29 100.0 32 ............................. AGAAAAGTGCCGGCTGGCATTCTCTGAGCACG 18348 29 100.0 32 ............................. TTCTTTGGGAAGAATTTGGAGGTTACGTCAAT 18409 29 100.0 32 ............................. CTATCGAGTGAATCTCGTCATACCCAAGACCA 18470 29 100.0 32 ............................. TAGGCCTAGAAATCGCAGACCTGACCGGATTA 18531 29 100.0 32 ............................. TGGCGGTGGCGGGCGAAGTCCATACCGAACAC 18592 29 100.0 32 ............................. TGCCCATGCGTTGATCGAATCGGCGCTGGTTT 18653 29 100.0 32 ............................. GCGGGTGGAACCGGGCAACGCCCAGTTCACCG 18714 29 82.8 0 ................C..A..C....TC | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCACAGGCGTGGGGATAAACCG # Left flank : GGTCTACCCGGAAGGCAACTTCATCGAAGCCACCGCCGACACCCCGTACTTCCAAATCGGTGAAACCAAATACGGCAAACCCATCCTCGACCGGGTGATCGACTACGACACCTCCCTCGACGACGGCATCAAATGCGCCCTTATCAGCATTGACTCCACCATCCGCTCCAACCTCTCCGTGGGCCTCCCCCTGGACGTGCTGCGCTACCAGCGCGCCAGCTTTAACGCCAGCGAACACTTCAACGTGGACGAACACCACGAAGGCTTCCGCCAGCTCGGCGAAGCCTGGTCCGTGGGCCTGCGCGATGTGTTTCATCGCATTCCGAATTTGAAGTGGTGATGCCCTCCGCTGCACCCGGTAGCAACCGCCGCCCACACACCTGGTGGCCGATGACCATCACCTGATCTGCCCCTTATTTTTTGACTAATTTTTGATCGGTTTTTTTGGTGGAAAATCAGAGCCTGATTTTCTTCTTTTGAATCAATAAGATATATTTAGA # Right flank : CCGGATGCTGTAAAACATCCATGGATATACATTAAGGATGAATTTCGGATTATCTAGATTGCTCTTTGTTGGGTGGAGGAATGTTCATGGTTACGCGAACGAAACTGGTGCGGTTGGGCAACAGCCGCGCTGTGAGAATCCCCAAAGCGGTTCTGGATCAGGTGGGTATGACGCTTGGCGACGTGGAAATCGAAGTGCGCGGTCGGGAGCTGGTGATTCGCCCGGTGGCGGCGATGACGTTGAGTGAAATGCTTAAAACCTTCAGCCCTGGAGATACGGCTCTCACCGCCGAGGACCGCGACTGGCTTGATGCCCCCCGGGCGGGAAACGAGATGCTGTAGTCGTGGCGTATGCCCCTTTGGCAAGCAGTTGGCGGTCGATCATTGCCGTTCCCCGGATGGCTTGCATTAACCCGGGGAAGTTGAGATATTACATGGTATATACCATCTGTGTGGGAGCTACCCATGACCGATACGGCGAAAGTATTCATGAGCGGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20151-20484 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQT01000018.1 Alcanivorax gelatiniphagus strain MEBiC 08158 ALTA_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20151 29 100.0 32 ............................. TTCTGGCTATGGGGGATCGGATCACTCGGTAC 20212 29 100.0 32 ............................. CGTTCGGAGTCTGGTTTTCCGGGGCCATTGGC 20273 29 100.0 32 ............................. CTCACGTTGGACCACCCGCTGGTTATTTCCAG 20334 29 100.0 32 ............................. CACACTTAATCGCGGTCTCGTCATCCATCACA 20395 29 100.0 32 ............................. CTCCGCGCCCTGTGGGATGAACGGCTGGCGGC 20456 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCACAGGTGTGGGGATAAACCG # Left flank : TTGGCCCGGGTCTCGGTCGAGCCATGGAACTCCGACGTGGCGCAGCGATACGGTACCTTAAGAGCCGAGAACCAGGCCCGCGGGGTATCCCTCTCCGCCCTGGACATGATGATCGCCGGGCACGCCTATTCGCTAGGCTTGGTGTTGGTCACATCAGACAGTGCCTTCACCCATGTACAGGGTCTGAGCGTGGAGAATTGGGCCGTCAATCCCTGATCGGCGGCATCCTGTCCGACCCGCGGCTTTCAACCCGCTGCCGCGTCCCCCTGAATATCAAGTTTTCAATAACCCGCCAGTGATTCTCCAATCGAGTACACGACGGTTCCCCCTCATGCTGAAGCGGACAGCAAGCACCGCGGACCGTTCGCCTGGCTGGTCGCTTAGGTACCGTGTCTGAACTGGTAAAGTGCCCCTGTTTTTTTGGTTGTTTTTTGATCTTTTTGTTTGGTGGAAAATGGGACTCCGATTTTCCTCTTTTTAATCAATAAGATACATTTAGA # Right flank : GCGGCTGGAGTCAGGCATCAAAATGGTGGGAGTTATTGTCAAATCTGGTGTATGACCATCAGGCAGCGTTCCTGTCAGATTGATCTTCCACCTCTATTCCATCCTGAAACTGTACGTTGTCCACGACCAGCTTCAGTTGGTCGAACCCCTTGATCCGCTTCCAGCGCTTTTGGGCGGACTGGAGCAGTTTGAACACCATCGATAACGTGGTGTCGCGGTTGCCGCAAGAGCGGCTTCGCTTGGTTCTCAGTCGCACTGTGGCGAAGGTGGATTCAATCGGATTGGTCGTCCGTAAGTGAATCCAGTGAATCGCCGGAAAATCGTAGAAGGCCAGCAGCTCGTCACGATCCTTCTCCAGGTTTTCCATGGCCTTTGGGTACTTGTCCCGAAACCGCCTCAAGGTGCTATCGAACGCCTTGTGAGCGCTGTCTCTTGTCTCGGCCAGATAGATCTCGTGCAGTGCCGATTTCACCTTTGGCTGCACGGACTTGGGCAGTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 21910-23892 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQT01000018.1 Alcanivorax gelatiniphagus strain MEBiC 08158 ALTA_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21910 29 100.0 32 ............................. GCGCCGTCGTACAGCAATCCGCACCTGCCGGA 21971 29 100.0 32 ............................. GTGCGGGCTACCCAGGTATCACTGGCCGACGC 22032 29 100.0 32 ............................. AAAATCTACGAGGACTACGAGAGCGCCTACGG 22093 29 100.0 33 ............................. CGGGAGATGGAGCGGTACTTTATCGGCGACTAC 22155 29 100.0 32 ............................. CAGGCTGACAACCTCGAACAGGCGTTCCACGC 22216 29 100.0 32 ............................. GTAACGACATTTTGTCGCAGCATTGGCGGCAC 22277 29 100.0 32 ............................. ATCTTCCAGCGTGTCCGCGAGTCCGAGGAAGA 22338 29 100.0 32 ............................. CAGGTGCTTGCCGGCGTGGCCCTGCTGATCCG 22399 29 100.0 32 ............................. CGACCATGTGGACCCGCTTCCCGGTGACCGGG 22460 29 100.0 32 ............................. CACCCCCATATCGCCACGGACAGCCGGGAGGT 22521 29 100.0 32 ............................. GGCTCCTGGGTCTGGGCGCTGGGTAGAGGGGC 22582 29 100.0 32 ............................. GCGTTCGCTGAGGTGCGCGTCACCGAGTGCCG 22643 29 100.0 32 ............................. GTGCCGGCGGCGACGACACCTGGGGATTCCCT 22704 29 100.0 32 ............................. CACTCCTTTATGCTGCTCACTCATCGCCCAGG 22765 29 100.0 32 ............................. GACGTCGATCAGTTCTCCCTCGTTCATCAGCA 22826 29 100.0 32 ............................. CGTCAACTGGCATGATCTACCGTGTGCAGCAC 22887 29 100.0 32 ............................. GGCTGTTTCCATATGGTGGGCGAGATCAACGC 22948 29 100.0 32 ............................. TGCTTTCCTCGCCCCACCCAATGGCGCGGCCC 23009 29 100.0 32 ............................. TAGGGGTGCTGCGGGTAGCCGTAGTCCAGCCA 23070 29 100.0 32 ............................. CCTACGCCAGAGACGCCAACAGCCGGGAGATA 23131 29 100.0 32 ............................. GGATTCTTGCAGGCGATCAAAGCGGGGATCCT 23192 29 100.0 32 ............................. GGTGCGGTAATGGCCGACGAGATCGGCTTGGA 23253 29 100.0 32 ............................. CTGAACCTGAACGGCTACGACGACTGGTACCT 23314 29 100.0 32 ............................. TGTTCCCGCGTTTCCGTCTGGTGCCGGGCCAG 23375 29 100.0 32 ............................. CTGGGAGGCTGGATCCTGATGGGCACACTCAC 23436 29 100.0 32 ............................. CTGCCGCTCGAACACTTCAGCGCGGCGGAGTT 23497 29 100.0 32 ............................. CCGTCGGCGTTCGCGGCGCCGGACGACGTGGA 23558 29 100.0 32 ............................. GAAAGGATTTGTTGGGTGACCGCGCGGAACTG 23619 29 100.0 32 ............................. GAAATGGCTAGACGGATTAACCCGGAACACTG 23680 29 100.0 32 ............................. CTGCTGGCCGAGTGGCTGGGCACGTTCGAGCG 23741 29 100.0 33 ............................. CAGATGGAGCGCATCTCCGGCCCGCTGTCCAAC 23803 29 100.0 32 ............................. AGATCGGCGCGGTTATCCACGCCCTTGCCGGC 23864 29 93.1 0 ..............C..........G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.8 32 GTGTTCCCCACAGGTGTGGGGATAAACCG # Left flank : GCCTCCTGGAAATCACCGGAGGAAACACCTCGCAGGTAGAGCCAGGGAATCAGTTCCTCCAGGCTCCGGGCGCGCTTCAGGTAGGGTGGCAGCAGGTGGCTGTTGAAGCGAATGCCAGAGCCACTGCGGTCCCGGACCTTGGGAACCTGGACTTCTACGTCGCCGACGCCTGTCTGAACAGCGCGTTTGGGAAGGTGCCCATTGCGCACCACAGCACGGCGGCCATCCGGCGTCTTGACGTCCGCGTACTGCTTCAACAGGCTCTCCAGCTCCGTCTCAACGGCCTGTGCGATCAGATCCCGGGCACCCTGCCGGATCAACTCGTGCAACGGGTCGTTGCTGGCTACCTCTGGTTGTGAAAGAGCATGCAGGTTAGACTTGGGCATGGCGTATCATTCCTCTGTTGGTTGTGATCTTGGCGGAGATCAACCAACAGGATACGCCACCCCTTCAGCCTGCTTCCATACACCAGAAATCACCATAACTCAAATGGTGGCGAT # Right flank : GCTCATTGGCCAGCAGAAGAGGACAGCCTGGCGGTGTTCCCCACGGCCGTGTGGTGGCCACCAATGAGCATGATGTGGTAATTCAGGCCGCGTGGCCCTTATAGCTCATCGCGTTCATGGGGTGACTCCTGCTTGTTCAAGAAATGCCCGAGCATCAGGGACCTGATACGGTTTGGCGTCCGGGCCTAGGAGCGCGGAATATAGCCTTCAGGGTACTTTGCCGTCTGCGGTCATGGTGTCAGATTTTAATACCGAAAAAGGGGGAGGATGGTAAACCGGTCCCGCATACGGTCTGATTCGTCCCTGCCGCCCGTATGGGCGTGGCGCCAGGGTCAACGGTGCTCTGTTGTGATCTGCGTCACAGGGCGCTAGATTGTGAGCTTGGCGACGTTGCCTGGGGCGATGTCGTCAATGGTTCCGCGTGATGGGCCGAAGAGCCCAGTGATAAAAAACCTCGCCGTTGGACAAAGCGGCTAAAAGAGGCAAAAGGGATTTGTGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 34588-35898 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQT01000018.1 Alcanivorax gelatiniphagus strain MEBiC 08158 ALTA_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34588 29 100.0 32 ............................. TGAATGAAATTGCAGGAAACAGATTGATGGAT 34649 29 100.0 32 ............................. GTCATCCAGCATCACGTCCAGCGCCTCAGCGA 34710 29 100.0 32 ............................. GGTGCTTGTGCTGATTCTTAGGTATTCGGCAG 34771 29 100.0 32 ............................. GGGCAGGACGAATTGACAGAGGGCGAGGGCGA 34832 29 100.0 32 ............................. GGCCCTCACCTTACGTACATGATGAAAAAGCC 34893 29 100.0 32 ............................. GCGGCGGGCTGGTAATGGCGCTGGTCACCGAC 34954 29 100.0 32 ............................. GAGTGGACGAAGTTCAAGCCGAAGATGGTGCA 35015 29 100.0 32 ............................. AGCAGAGGTAAAATAGTCGTGGCGCTTGCCAC 35076 29 100.0 32 ............................. GACGCCACCACCGGTTCTGGTGGTCGTCACAA 35137 29 100.0 32 ............................. GACCGCGGAACGCCCGGCGCCCACCAATTCCA 35198 29 100.0 32 ............................. GCCCGGTCGGCCTCCGGATGGGCCAACTTGCC 35259 29 96.6 32 ............................T CAGTTGGCGAACAGGTTCGTGCGTTCGGCGGA 35320 29 100.0 32 ............................. TCGATGTCGGTACCGGCAGATATTGCTCTGGC 35381 29 100.0 32 ............................. TCGCCGCCGGCATCGACAAGCAGAAGAGGGCC 35442 29 100.0 32 ............................. GACGCAGATAGGCGCGCGCCTCAAGCAAAGCG 35503 29 100.0 32 ............................. TAGCAGGGCAGCAGACAAAGAACGCGGCGCAG 35564 29 100.0 32 ............................. AGCACGGGCCGGGTGGACGGCATTGTGGCGAC 35625 29 93.1 31 ............G.C.............. AAATCGCCGACCGTGTGACCGCCTACGGGAA 35685 29 93.1 33 ............G.C.............. TGGAATTGGCCCAGGCCCAGCTACTCCGCGCAC T [35687] 35748 29 96.6 32 .T........................... CCGAGCAGGACCAGGAAGACTTTGGCCAGCTG 35809 29 96.6 32 .........................G... TTCTTGTCGCCGGTCGCGGTGCTCTGCTCGCC 35870 29 89.7 0 ............G.C............G. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GGGTTCCCCACACGTGTGGGGATAAACCG # Left flank : TATTTTGTGAGCACCGATCATGGAAGCCCTTATCTGGTTTATCGTTATGGCGAGCATTCCAGTTGCCTCTGAGCAAATCGATTCCGGCCCGTTTCTGGCTCCGGAGTTAACGCCACGGTTTGTCAGCGGGACTCCGCGACCTCAGTCAGTGACAGCGTGAGATTTGGCCCTCTGCTTTATCCGCGGCGGCCCGCCTCCAGAGCGGGCCGCCGAGTCCGCCCTGGTTCTATCCGCAAGGCATAAACCTCAACGCGCCTCGGAACCTTTCCTCGGTCGACGACCGCGCTCCTTCCGGGTGGCTCCGCCGACCCGGCCAACCTGGCTGGTGTCCCTCGCCCTTGTCATCCAGCACAACCCTGGCCTGACGAAGTGATGGTTTTCTCGTGACGTCGTTTGAGCGGTTTCTGTAGTACCTAATCGAAGGCTGTTTTTTGATCAACTTGTTCGGTGGAAATTACCGGCCCGGTTTTCTTCTTTAAGATCAATGGGATACATTTAGA # Right flank : GGCATTGGGCTAGATCGCCAGACAGATAGAGGATGCATGTGGCGGGTAGAGCGGTTGGCTGGGCTTGCCGTACCCGGAACTGTGACAGCGAAGGAGAGCTATACCTGAAGCCCGTTAATCCGGGCCGACCAGAGCCAATCATCAGGATCAACGGCTGCTGTAGTGTGTGCGGGGGGTAATTGGCAGGTATGATCCGATGTAATAAAAACGACCCAGGAGGGCAAAATGAAATACGCCATCATTGGCTTTATTTTTCTTGTGTGGGGTGGCTCTGCCGGCGCCAGGACCCTGGAAGAAATTGGTATATGGAAGAACCCAAAAGGGGAGATGTATGTCCATGTCGCCAACGAGGGTGGCGGCAAAGCGACCATCAGCCTTTACGCCACTGACGAGCATAACGTGAACAAGGTCATGTTTTTTGGCAGTGCCGAAAAGTTCGACGATCTAATCACTTTGATTCGCAAAGCGCAGGAGCGCGCCGGAGAAATCAAGGGTGAGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCACACGTGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //