Array 1 9655-11863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000013.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 9655 36 100.0 37 .................................... CAAACCCCAGGCATGTCCAAACTCCTGAAAGTTTTCT 9728 36 100.0 39 .................................... AGTTCAGCATCATCCCATGCAGCCCATTTGCCATTGGGC 9803 36 100.0 38 .................................... GTAATAAACTCAAGGCCATCATCCAACTGAATAGTGCA 9877 36 100.0 38 .................................... ATTGGTTGCAGCAGGCTTGGTATGAGGCGACTTATGGG 9951 36 100.0 42 .................................... TGCATGCTATTCCTGCGTTTTCTGTTCCTTCTGAAGTGGCGT 10029 36 100.0 42 .................................... TGCTGGGCTCAGGGGGGCGTGAGCACTCCTGTGCTTACGCCC 10107 36 100.0 38 .................................... TCCTGGCCGTGGGAAGACTATGGCCATGACCGAGTACC 10181 36 100.0 43 .................................... AGGGCACCCAAAAAAAATTTTTCAATTTTTTTTGGGTTCCCAC 10260 36 100.0 37 .................................... TCGTCTCGAAGCATCTCGATTAATCCCCTCTCAGCAA 10333 36 100.0 37 .................................... CCGGTTGCTGTGAACTGTTGGGCGCCTCGGGTTCGTT 10406 36 100.0 40 .................................... ACCAGCGATAGGCCATTTCTGCTAAAGCATCACCGGGCCT 10482 36 100.0 38 .................................... ACCTCTTCAATGGCGGAAGCCGCGCCGAGTACTTGTTG 10556 36 100.0 39 .................................... CCACCTTTCCCCCAAAGCAAACTACGAGCCTGACGATAC 10631 36 100.0 36 .................................... CCCATTGAAAGAGTACCTTTTTCGTATGGTCAAACT 10703 36 97.2 39 C................................... ATTAATCCCCTCTCAGCAACAGTTACCCTCATTACTTCA 10778 36 100.0 43 .................................... ATAAAAAACAAAAGTTCTTTACAAAGTGTTAAAGCTCTTGTTT 10857 36 100.0 40 .................................... TTTCGTATGCAGCTATTTTTTTGCCCATACGGTCTATTTT 10933 36 100.0 37 .................................... TTTTTCGTATGGTCAGGCTCTTGAGTTTAGAAATCCT 11006 36 100.0 39 .................................... CCCTGACAAAGCGTTGCATCAAGGCGATTTCCATAGTAT 11081 36 100.0 38 .................................... TGCTATGCATAGGGTTTGTGATGAGTTATCTCATCGGC 11155 36 100.0 40 .................................... GCCTTTACCATAGATGGTGAAACCATTGCCTTAGAAGGAA 11231 36 100.0 39 .................................... AAGCTGACGATGAAGAGTTCAAAGAGTTTCTTAAAAACT 11306 36 100.0 37 .................................... ACCCCTATTCTCACTGTTTCACTCGGGCTGCCGTTTA 11379 36 100.0 40 .................................... TACGGTACTGTAGCTGAGGGAATCGTTGACAGCCTTAAGA 11455 36 100.0 39 .................................... GATTGGCATCCCGGCCCTGTCCAGTGGCGTCCAGTCGAT 11530 36 100.0 37 .................................... GAGAAACCGGTACCGGTATACTGAAATCACTTAAACC 11603 36 100.0 38 .................................... TTTATTTTAAATAGAAATGATGGTTTTATACCAAACAT 11677 36 100.0 37 .................................... CGTATCACTGTTTCTGATCACTCTATATATGTGGTTA 11750 36 100.0 42 .................................... TTTTTCGTATGGTCAGACTTTAGAGTTTAGAAATCCTCATTC 11828 36 91.7 0 ................................C.GG | ========== ====== ====== ====== ==================================== =========================================== ================== 30 36 99.6 39 GTCTAAACAAAAATAATTCCCTCTGGGAATTGAAAC # Left flank : TTTGAATGCCGGCTGCGCAAAGAAGATGTGTTGAGTTTAAGATATAAACTGGACAGTTTGATTAAAAAAAACGAAGACAGCATCATCTTTTACCGCCAGTGTCCCCGCTGCAGCGGTAGGGTAGACCGCTTGGGGATGTCTTTCGACCCATTTGGAGATGGATTATATATAATAACTGGTGGAGATTTAGCCAATGAGGATGATGCAGGCGATATTTAAGAAAAGGAAAAGTAATAACGGTTAATCAAGCCTAAATAAGAATAGTTCTTATCGAGCACCCTGGGCTGTGCAAAAAACCCCGGGGTTGCTCGCAAAAAACTTTTTTGGGCGAGCAAGCAGGAAAACCTGCGCTGGTGGCGAACTAAGGAGGTGGAAAAAGATTCATATCGCCTTGATGTTATTTTGCTTTAGCTAAGATATGGAAAGATATATGCTCTTGCTGATAGGTGCTCGCAAAAAGCCATTATAGCCCTTGAGTTACAAGGCCCGAGGACCAAAAG # Right flank : GTTGAAGACAAACACCGCTTTCAAACCTTTCAACCTGAAAGCGGTGTTTTGGTGTTTTATTGAAGCTAATAATTTTATCCGTTAACACCCGCAGTCCTTGTGGTGCCTGGGTTCTTTGTAACCTTTCATGTGTCTAATAATCCAGTCCAGTTTGCATTCAATTTCTTTTATTTCCTTTTTAATTTCCTTTAATCCAAATTCCGGGCTGTCAAGTTTGCATTCAATATCAAAAATTTCGCATTTAATTTCTTTTAAGCCGAATTTTTTATCACAGATTTTATCTTCAATATCTTTAACTTCTCTTTTTATTTCTGATAAGCCAAAGGTGGGGCTGAATATGGCATCATGAATGGCGGAAATTTCTGACTTAATTTCGCTTAATCCAACGGTGGGGCTGAGAATAATATCTTCAATGCCCCCCACTTCTTGTTTTATTTCCGAGAGGCCGAAGGATGGACTGTTTATCATATCTTCAATATCTTGAATTTCTTTTTTGATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAACAAAAATAATTCCCTCTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 57228-56999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000003.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 57227 30 100.0 36 .............................. TCTTGGCTTTGCGCTTGTCTGCTTCCAGGCCGCTGA 57161 30 100.0 37 .............................. TCGATTTCACAGTGGCCGACACATTCATGACCGGCCA 57094 30 100.0 36 .............................. CAAAATCGCAAAAGACGTGGCGGCCGCCCAGTGGCA 57028 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTCTAGCCTACCTATGAGGAATTGAAAC # Left flank : AAAATTCGAAAATAATAAATGGAATACAAAAGAGATTCAATATTCAACTTTCTTAGTTAAGTAATTATGACCTAACCCGGTTTGATGGACAGCCGGTTAAAAAGTGTATAGTATAAATAACTGGGAATGCTGAAACCAGCGGGTGAGGCAAGAAGAACATATGCAACCAGCCCCCAACCATGTGTGGGCTGCCGATATCACCTGTATACCCACTGGTGAGCGGCAGCTGTACTGCATCACCATCGCGGCAGCCTACGCAAGCCGTGCATACCAGCAGCTTAGCTTATTGTCTAATTTATCAGGGAAAGATTATAAATATACTGTAAAATAAAATGTCGTCGACCCCCGGTAGTGTAATTTTCCCGGGGGATCGACGACATTTTTCAGCAGCTCCAATGTATTGATTTAACTGGTATGTTGGAAAAATCTAAGATGAAATGCTTGTTTTTGGTATTAGTATTGTGTAAACTAAAATACAGGTACTGAGCGCTTTTTAATGG # Right flank : TTTTGAATGGGAGTGTAAATTATTTTGTGTAAATGGGTAATTCCGTTGAATAGCGGTTAACCTTATAGACCTCGGCTTTATTATTTTACTTAAATAGGAATATTAAACTTAATTCTAGCCCCACCCATCTCATTATTTCCTGCTGTAATGCTGCCGCCTAATTTTTCTACAAGAGTTTTTACAATATATAATCCTAATCCATAATGTCCTTTTTCCTTCGACCTAGATTCATCACCCTGATAAAATCTTTTAAATACATTCTTAATATCTCTGCTGCTAAACCCGCACCCTGTATCATCTATTAAAAAACTCAGCATATTTTGCTCTATATTAACCTTTAATATTATTTTGCCATTGATTTGAGTATACCTTAAACTATTAGAGATTATATTATCTAAAATTTGACTTAACGCATTTATATCTGTGGAAATTACAAATTCATCACTTATTTTTTTATCTTTTTTCATTATGAAATCTACTTTTCTAAGATTACAAATTCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1-288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000035.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 1 27 100.0 37 ........................... ACCCCTCTGCCTGCACTATAAACCATGAACCAAAGGG 65 27 100.0 38 ........................... ACCCGCTTAAAACATCACCAGGCTCAGCGTTTCCGGTG 130 27 100.0 38 ........................... CCCCCCCATAAAAAGGCACATCATCAGGTACAGCAAAG 195 27 100.0 40 ........................... ACCTGTCTGGAGAATCCCAGTATGGATAAAAGCGTAGTAG 262 27 81.5 0 ......GT........G........TT | ========== ====== ====== ====== =========================== ======================================== ================== 5 27 96.3 38 TTTCTAACCTACCTATAAGGAATTGAA # Left flank : | # Right flank : TCTTTTCCCGGTTTAATGGACAGCCGGTAAAGGATGCATAGTATAAATAATTAAGGGTGTTGAAAATGGTGGGGATGCCGGTTACCTGGGAGCACACGGAGTAATTCCGTCATCACCGGGCTGTATGAGCCCAGAAATTATAAAAACAAAGAAAAGCGGCTTAACTTATTGTCTAATTTATCAAGGAAAGATCAGATATACTAAAAAATGTCGTCGATCCCCGGTAGTGTAATTTTTCCGGGGGATCGACGACATTTATTAATAGCTCCAATGTATTGATTTAACTGGTATGTTGGAAAAACCGAAGATGAAATGCTTGTTTTTGGAATTAGTATTGTGTAAACTAAAATGCAGATATTAAGCGCTTTTTAATGGGTTTGTAGCCTACCTATGAGGAATTGAAACACTGATACTGTGACGGTTAATCCTGACTTTAGTAGTGAGTTTGTAGCCTACCTATGAGGAATTGAAACAACCAAGCGTTTCCTGGATGGCCTCGT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTAACCTACCTATAAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.00,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 663-2020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000035.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 663 30 100.0 38 .............................. ACTGATACTGTGACGGTTAATCCTGACTTTAGTAGTGA 731 30 100.0 35 .............................. AACCAAGCGTTTCCTGGATGGCCTCGTCGGTGCCG 796 30 100.0 39 .............................. AAAATATACTTTGATAAATTACCTGATACCAAAAAGAAG 865 30 100.0 38 .............................. AGACAAGTATAACACTATATGTAAATTGTTGGTACGAC 933 30 100.0 35 .............................. CAAAAAATGTTGCAATACGTAAAGTAATACGCTAC 998 30 100.0 38 .............................. ACACTTTTTTTGTTTTGTTATATCATGTTGTATGGGTG 1066 30 100.0 37 .............................. ATGCGGGTATCGAGCGCGGCCTTCTCGGTGGATATTT 1133 30 100.0 35 .............................. CTGTGGAGAGGAGGTGACGTAAATGCTGACACAAG 1198 30 100.0 36 .............................. CTAATCTCAGTGATTCGTGCACTGTTCGGCTGGATG 1264 30 100.0 35 .............................. ATACCAGTAACATCGTTGATTAGGATTTCAAGCAT 1329 30 100.0 35 .............................. CCGGCAAACCAAACTGAATGCCCTCATTGCCATGG 1394 30 100.0 36 .............................. ATAAACACCATTGTATCAGATAAGAAATTTTTTTTA 1460 30 96.7 35 ....C......................... TTGAATCTGCTAAATGTCCAACACTTAATACTATC 1525 30 96.7 36 ....C......................... GTGGCAAGATACGCGTTGTTGGCGTGAAGGCTGTTC 1591 30 96.7 34 ....C......................... TGTGGAATGGCTGGTAGAAAGGGCGAACGACCAA 1655 30 93.3 36 ....T...T..................... TCCCAACTTCATGTTCATTATCCAGCTCTTCATTAA 1721 30 93.3 36 ....C...T..................... CCACCCCTGTTAGGCCATCAACTGTTGAACTAAAGA 1787 30 93.3 39 ....C...T..................... ACCGGTCAACTATCCTATTACCCCAGCTCCCATACCTTT 1856 30 93.3 37 ....C...T..................... AGCGAATCTGTAAGCAGCCTGTCTTTCTGCCACAAGA 1923 30 93.3 38 ....C...T..................... TTAGTACCGGGAATAACTCCGTAGTCTTGCTCTTTTAC 1991 30 76.7 0 .......T...G.........G....TCCT | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 96.8 36 GTTTGTAGCCTACCTATGAGGAATTGAAAC # Left flank : CATAAAAAGGCACATCATCAGGTACAGCAAAGTTTCTAACCTACCTATAAGGAATTGAAACCTGTCTGGAGAATCCCAGTATGGATAAAAGCGTAGTAGTTTCTAGTCTACCTATGAGGAATTGTTCTTTTCCCGGTTTAATGGACAGCCGGTAAAGGATGCATAGTATAAATAATTAAGGGTGTTGAAAATGGTGGGGATGCCGGTTACCTGGGAGCACACGGAGTAATTCCGTCATCACCGGGCTGTATGAGCCCAGAAATTATAAAAACAAAGAAAAGCGGCTTAACTTATTGTCTAATTTATCAAGGAAAGATCAGATATACTAAAAAATGTCGTCGATCCCCGGTAGTGTAATTTTTCCGGGGGATCGACGACATTTATTAATAGCTCCAATGTATTGATTTAACTGGTATGTTGGAAAAACCGAAGATGAAATGCTTGTTTTTGGAATTAGTATTGTGTAAACTAAAATGCAGATATTAAGCGCTTTTTAATGG # Right flank : TTCTTTAAGAGTGTATAGCATAAATAACTGGGGACGCTGAAAACGGTGGGGGAGGCGATGAATTATTATTGCCTGGTATAGACGTTCTAAAAGCCAGCGAAGCCAATATGGTGGGGCAATTTTAGAAAAGATTAAAATTATCCACCAAAAGAGCTGAGAATTTACCAACAACTTGCCGGCAGGGGTATTGAAGCGTTGAGCGTATTATGAGATCAGCAGGCATTAGCCATTTAAAAGGGCAGGTATAAAGCAGCAGTAAACCCGGGACATACCATATCGGCTGCTGAAAATAAGCTGGCCTGCCGGTTTAATACGCCAGCCCCTTCGTGACGTGATGGTGTAATTGAAGAATGACAGGGGTTTATCAGCTGTATACGAGGCCTGTACAGTGCGGTTCTGTGAGGGGGATAACGCTGCAGCAAATTACTGCGGCGCTGCCCTGCACGGTAATACCGGTGAATGGCTGGCGCATATAATGGTAAAAATAAATACTGGGCTGA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 58023-58591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000016.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 58023 30 100.0 36 .............................. ATGACACTAGTGTTCCTTGCCATAATGGATGGGTAG 58089 30 100.0 38 .............................. AGGTCTAAACCATATTGTTTTAATTCATATTCAAAAAC 58157 30 100.0 38 .............................. TTGAACTTTTGGGGACCTTAAACTCAGCTGTATATTTC 58225 30 100.0 36 .............................. TTCGTGGTGCTTCCCTTAGCGATAACCTCAAATTTA 58291 30 100.0 38 .............................. CTGTAGTAGCTAGAGATAGAAACGAGGCTGTAAAATTT 58359 30 100.0 37 .............................. ATAAAAAAATGCTGGGAAAAAACAAAAAAGAATATCA 58426 30 100.0 40 .............................. ATGGGTCTTACATCGGAATATGACATATTGGAAAAGGTTG 58496 30 96.7 36 ....T......................... CCGAGACCTGCCCGGGATATTTTTTATGATGTTTTA 58562 30 86.7 0 ..........................TCCT | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 98.2 38 GTTTCTAGCCTACCTATGAGGAATTGAAAC # Left flank : AGGTATAGCGGTATTACTGCCGGACTTAATTGATGCTGCCATGGTAGGAGCCAAAACCGTTCAAAGCCCCATGCGGAAGATGATGTTTATGCTTACTTTTGTTAGCATTGGTATCATTACCGACTTCAGCAAGTTAAAGGGTATGGGAAGAATGGCACTGTTATACGCCGTTGCCCTGTTCCTGATTATTGCACCCATTGCCCTGGTGGTATCTTACGTTTTCCACCACGGCATGATGCCACCTGCTGCCGGCTAAGTAACTTTAAAAAAACGGCCGCCCAAAAGGGGGCCGTTTTTAACGGAACCTATCAACCCAAACCTGTATACTAAAAATGTCGTCGACCCCCGGTAGTGTAATTTTTCCGGGGGATCGACGACATTTATTAATAGCTCCAATGTATTGATTTAACTGGTATGTTGGAAAAACCGAAGATGAAATGCTTGTTTTTGGAATTAGTATTGTGTAAACTAAAGTGCAGATATTAAGCGCTTTTTAATGG # Right flank : TTTTCCCGGTTTAATGGACAGCCGGTAAAGAGTGGATAGTATAAATAATAGAAGATGCTGAAAATGGTGGGGATGCCGGTTACCTGGGAGCACACGGAGTAATTCCGTCATCACCGGGCTGTATGAGCCCAGAAATTATAAAAACAAAGAAAAGCGGTTTAACTTATTGTCTAATTTATCAAGGGAAGATCAGATATACTAAAAATGTCGTCGATCCCCGGTAGTGTAATTTTCCCGGGGGATTGACGACATTTATTAATAGCCCCAATGTATTGATTTAACTGGTAAGTTAGAAAAACCTAAGATGAAATGCTTGTTTTTGGAAGTAGTATTGTATAAACTAAAATGCAGATATTAAGCGCTTTTTAATGGGTTTCTAGTCTACCTATGAGGAATTGAAACGTAAAGGAAGTGATAAATAATCGATAGCAATAAAAGTTTCTAGTCTACCTATGAGGAATTGAAACTCGGGATATGGCTCGTACTTTATGGAGCCGTCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 58963-59257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000016.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 58963 30 100.0 35 .............................. GTAAAGGAAGTGATAAATAATCGATAGCAATAAAA 59028 30 100.0 35 .............................. TCGGGATATGGCTCGTACTTTATGGAGCCGTCCGC 59093 30 100.0 40 .............................. CCCAAGTATCAAATACCATGGGCAAGATCGCCCAGTTCCA 59163 30 100.0 35 .............................. ATTACCCCCTCTTAAAATCCGTTTATAGCCCGTCG 59228 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 99.3 36 GTTTCTAGTCTACCTATGAGGAATTGAAAC # Left flank : TTACATCGGAATATGACATATTGGAAAAGGTTGGTTTTTAGCCTACCTATGAGGAATTGAAACCCGAGACCTGCCCGGGATATTTTTTATGATGTTTTAGTTTCTAGCCTACCTATGAGGAATTGTCCTTTTCCCGGTTTAATGGACAGCCGGTAAAGAGTGGATAGTATAAATAATAGAAGATGCTGAAAATGGTGGGGATGCCGGTTACCTGGGAGCACACGGAGTAATTCCGTCATCACCGGGCTGTATGAGCCCAGAAATTATAAAAACAAAGAAAAGCGGTTTAACTTATTGTCTAATTTATCAAGGGAAGATCAGATATACTAAAAATGTCGTCGATCCCCGGTAGTGTAATTTTCCCGGGGGATTGACGACATTTATTAATAGCCCCAATGTATTGATTTAACTGGTAAGTTAGAAAAACCTAAGATGAAATGCTTGTTTTTGGAAGTAGTATTGTATAAACTAAAATGCAGATATTAAGCGCTTTTTAATGG # Right flank : CATATGATGCTGCGAAGGAATAAAAACGCATGTCAACGGTTAGTGTACAGCATAAATAACTAGATGTGCTGAAAACGGTGGAGAATGCCGGTTTACCCGGGAAGGCATGGAGGACTTCCATGTTGAGAGGATGTGCCAAGTCCTCAAGGCTTCCCGGGGTATTATTATGCCTGGTGCAGGGCCGGCAGGGGTATTGAAGCGTTGAGCGTATTATGAGATCAGCAGGCATTAGCCATTTAAAAGGGCAGGTATAAAGCAGCGGTAAACCCGGGACATACCATACCGGCTGCTGAAAATAAGCTGAGCCGCCGGGTATATTTGAATACTAGAAAGTTTCTATAACCGAATAAGACTTCATTTATCACTGGACTGTATGAGAAAAGCGCTTAACTTATTGTCTAATTTATCAAGGGAAGATCAGATATACTAAAAAATGTCGTCGACCCCCGGTAGTGTAATTTTTCCGGGGGATCGACGACATTTATTAATAGCTCCAATGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 59858-60615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000016.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 59858 30 100.0 36 .............................. GTTCTGCAACTATTCTGACTACATCTTGGTATTTAT 59924 30 100.0 39 .............................. TCAATATTCAGGGCCATTTCCTTGCTGGTAACTTCCACA 59993 30 100.0 36 .............................. ATGTATTGTCTGAGGGATATGCCCAGAATTCTTGCC 60059 30 100.0 36 .............................. AGGCTATGAAGGAAACTGATTTGCTGATATGGGACG 60125 30 100.0 40 .............................. TGTGCATGAGCGCATGCCATAAAGCAATTGCACCGGGAGG 60195 30 100.0 35 .............................. ACCGCCAATATTGCGAGCTGGTATAATTCCTCATC 60260 30 100.0 35 .............................. ATCTAACATCATACTCAATAGCTTTATTTATTTCA 60325 30 100.0 37 .............................. ATAAAAGCTATACCCTTGCGAAAAGCGATGAACCCAA 60392 30 100.0 36 .............................. GCTTGCCGGCGGTTTCAAATATAACCTCTAAAACAT 60458 30 96.7 34 .......A...................... CCCTCTGCCTGCACTATAAACCATGAACCAAAGG 60522 30 96.7 34 .......A...................... CCCTCTGCCTGCACTATAAACCATGAACCAAAGG 60586 30 96.7 0 .......A...................... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.2 36 GTTTCTAGCCTACCTATAAGGAATTGAAAC # Left flank : AAGGCATGGAGGACTTCCATGTTGAGAGGATGTGCCAAGTCCTCAAGGCTTCCCGGGGTATTATTATGCCTGGTGCAGGGCCGGCAGGGGTATTGAAGCGTTGAGCGTATTATGAGATCAGCAGGCATTAGCCATTTAAAAGGGCAGGTATAAAGCAGCGGTAAACCCGGGACATACCATACCGGCTGCTGAAAATAAGCTGAGCCGCCGGGTATATTTGAATACTAGAAAGTTTCTATAACCGAATAAGACTTCATTTATCACTGGACTGTATGAGAAAAGCGCTTAACTTATTGTCTAATTTATCAAGGGAAGATCAGATATACTAAAAAATGTCGTCGACCCCCGGTAGTGTAATTTTTCCGGGGGATCGACGACATTTATTAATAGCTCCAATGTATTGATTTAACTGGTATGTTGGAAAAACCGAAGATGAAATGCTTGTTTTTGGAAGTAGTATTGTATAAACTAAAATGCAGATATTAAGCGCTTTTTAATGG # Right flank : C # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : GTTTCTAACCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 720-1347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000006.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 720 30 100.0 35 .............................. AATAATATTATTTAAAAATTCAATTGTTTTTTTAA 785 30 100.0 38 .............................. TAACGCAGGCCACGCATAGTCAAAAAGGTGGTTATGAT 853 30 100.0 36 .............................. AGAATATACAACGGGCGACTCCAATATTATAATGGA 919 30 100.0 36 .............................. CTAATACCATTTTGAATTCTGCACCCACACCGGCGT 985 30 100.0 35 .............................. AACGGCAGTCTTACAAAATTAAAATCTGCCACCGA 1050 30 100.0 36 .............................. ATCATATCAAGTACTGGCTTCAACATCTCAGCAGTT 1116 30 100.0 36 .............................. TATCAACCAATGCGATGGAGAAAGCCGCGCCGGGTA 1182 30 100.0 38 .............................. ACCGGCTAATTAACTTGACTAACGGACAAATTAGTCAC 1250 30 100.0 38 .............................. TCCATCGGGGCCCTATGTGTTCTTGCCACCACTTCATT 1318 30 93.3 0 ........C..........T.......... | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 37 GTTTCTAGTCTACCTATGAGGAATTGAAAC # Left flank : ACACGGCCCGCCTTTCATCCCCGCCCTTTGCTCTCGCTTCGCGAGCAAGGAAAGCTCAGGACGGGGACTTCCCGGCGGGAAAGTTAAAATCAAAGGCGGTATATATTATGGAAGCAAACAAAGCTCTGGCACTATTTTTTTGTATTGCAGGAGCAATTTTAATGATTATTAGCCTTCTTTATCGCAAAGGATATTATCAAATACCTTTTATATCAGAACATAGTGAATCACAAAGAAAGCAATACACTGACATTGGTATCCTGCAATCATTATTCCTTATATCATAAAGAACTTTGGGATACTTATTGTTTAATTTATCAAGTTACTAAAAAATGTCGTCGACCCCCGGTAGTGTAATTTTCCCGGGGGATCGACGACATTTTTCAGCAGCTCCAATGTATTGATATAACTGGTATGTTAGAAAAATCTAAGATGAAATGCTTGTTTTTGGCATTAGTATTGTGTAAACTAAAATGCAGATATTAAGCGCTTTTTAATGG # Right flank : CGGCCAACAAAGAACAGACTCAAAACCAAGCAGGATGGTTTCTAGCCTGCCTATTGATTGTCAATAAAATTGGCCCACCTTATGCACATAAATTTAACCCATCCATTGAAACAAAAATAATAAAAAAACACTCTGCTGATGGGCGAAAATTTTGTCTGGATCGCTTCGCGCGGCCTTGACAAAGAAACGCCTGCAGGCTGCAGCCGGTGCAGGAAAATACGAGCAGGGCGCCGGAGATAAAGCTCTGCTCGAGCTCAAAAGAGCATGAGATTATGATTTTACCATTTTAGACAGTCGTTTGCTGCTTTTAGCCTGAAATTAGCGGTCGGTTTGCCCCGCGGGCCACGTAACGGCTCAGGGCTCGCAATACCCTGCCGTTTAAACCCAGGTCAATGCCGCAGGTTCCTTTAAGTGCCCCGGCCAGTTCTTCCAGACAGGTGTTGCCGGCCCTCTCTCCCAGTCCACCGATAGTTGTATCTATATATCGAACACCTTCCTTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 70594-72218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCW010000008.1 Desulfohalotomaculum tongense strain DSM 29799 Ga0454065_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 70594 30 100.0 35 .............................. TCAATTTCTCTTTTAACTGAACAGTATTTGTCATC 70659 30 100.0 35 .............................. ACAGTAATGGATAAAAAAAGATTAGGTGATTGCCG 70724 30 100.0 39 .............................. CCACACAGCAGCGGTATAATTTAAGCAGTGGTATGCTTC 70793 30 100.0 35 .............................. TGCAGCTTTTGAATTCCATTGATACTACTCAATAT 70858 30 100.0 35 .............................. TTATTTTGCCCTGCCTCATCAGCGTGGGGTGGGCA 70923 30 100.0 37 .............................. TCATAAGGCGTTTAATATCGCCGCTTTCTACACGCTC 70990 30 100.0 39 .............................. ACTAAACGGTGATCTATGTGGATATTGCAAAAAGACTCA 71059 30 100.0 36 .............................. GCTGGACGCCTTTTGTTGTCATTTCCACACTACCAT 71125 30 100.0 35 .............................. ATTATATTGTATTGTTGTATATTCAGTTTGTCAAT 71190 30 100.0 37 .............................. TTTTAATTTAGTATTTAAAAAATCAGGAGCATATTTT 71257 30 100.0 35 .............................. TAAAAAAATGACGATAATATAATGGTAACAAGGAG 71322 30 100.0 35 .............................. CTTTGATATGACTTAAATTCTTTTTTAGTCATATA 71387 30 100.0 35 .............................. ATACTCCAATTGCCATGCAACGGGCTGGATAAATC 71452 30 100.0 39 .............................. CCTTCTCCTTTAGGTTCATCACCACATTGCTTGCACTTA 71521 30 100.0 35 .............................. AGCACCGATTGCAGCGCACTCCGTCTTTCTTTCAG 71586 30 100.0 39 .............................. TACTCATTTTCAGCACGTTTTTGTTGTTCCCGGTACTCA 71655 30 100.0 35 .............................. ACCAGCCCAAACTGCGGGTAATTGAGGGGCGGAAA 71720 30 100.0 35 .............................. TGGGATATGTTGCAGTTGAAGGTGCAGTTGATGCC 71785 30 100.0 38 .............................. GCAGTACGTAGCAATCTCAGTGACTTCCTGTATTCTTT 71853 30 100.0 36 .............................. GCTGGTTCCCGCCTGAAATAGACCATGTTGTGGAAA 71919 30 100.0 36 .............................. CCGCTTAAAACATCACCAGGCTCAGCGTTTCCGGTC 71985 30 100.0 36 .............................. CTTAATCTGCTATCTGCTTCAATGAACCAAAAGTCG 72051 30 100.0 42 .............................. TTACAAAAAAGGTAAAGCGAAGCCGTGAGGACATTGCAGAGC 72123 30 100.0 36 .............................. TATTTCTTTCAGCCACAGTCACCCTCATTACCTCAG 72189 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ========================================== ================== 25 30 99.9 36 GTTTGTAGCCTACCTATGAGGAATTGAAAC # Left flank : TAATTGGTGAAAAAGTGTATGAGCCTTTCGTGGCTAACTGGTAAAATAATATAAAGTGGGGTCTATAATGTTTATAATTTTAGTTTATGACGTAGGTGTGAAAAGGGTAAATAAGGTGCTTAAAAAATGCAGAACTTACCTGCATTGGGTGCAAAATTCAGTGCTGGAAGGAAATATTTCTGAGGCAAATTTCGTCAAGTTAAAAGCTGAATTAAGTAAGATAATTAACACCAAGGAAGATTCGGTAGTTATTTATACTTTTAGAAGTCCTAAATACAACTCGCGTGAAGTTCTTGGAGTTCAAAAAGGTGGAGAAGAAAATATACTATAAAATGTCGTCGACCCCCGGTAGTGTAATTTTCCCGGGGGATCGACGACATTTTTCAGCAGCTCTAATGTATTGATTTTACTGGTTTTTTTAAAAAATTTAAGATGAAATGCTTGTTTTTGGAATTAATGTCGTGTAAACTAAAATACAGGTATCAAGCGCTTTTTAATGG # Right flank : CAAACCCAGTTCAGTCATTGTTAATGACTACCTCCGTATCCATGTGTTAATATTGGCTCTTACTACAAAAACAGTATTAAAATGCCGGAAAGAATCTGCTCCGCTTTTGCTGGATTATAACCCGGCAAGTCTTAATCTGCCGCTGGTGAAAATTAAACGTGACCTTTCCTGTTACACCCTGGATGAAAGCGGGGCGAAAATTCAGTGAGCAGTAAGTTAACCGGCTGTCTGGAAATCCAGGCGGCAGCGTTATGATTTAATGTAAACAAGGGAAAAGGGATTGGGATGCTGTTTAATAGAGCAGAAATGCTGAATCGTAGAGCTCGTCATCCAAAATTTAAAGCGGATGAGATTATCGGGGCTCTTAATCTTCAAAAAGGGGCAGTGATTGCGGATATCGGATCCGGCGGCGGCTACTTCACCATGCGCTTTGCTGAAGCGGTAGGACCGGAAGGCAAAGTATACGCTGTAGATGTCAATGCAAAGCTCTTAGCTTATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //