Array 1 178992-180497 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJBJ01000019.1 Methanosarcina sp. DH1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 178992 37 100.0 33 ..................................... TTTTTTTATATTTTATTCTGACTTAGGAAAACA 179062 37 100.0 34 ..................................... ATGGTTTCGTAGGTCATGAAATCGGGGTCACTTA 179133 37 100.0 35 ..................................... ACTTTAATAAAATTAGAAATAAAACAATTAACAGT 179205 37 100.0 35 ..................................... ATAACAATTACAACGGAGCTACGCATATGGCAGAT 179277 37 100.0 35 ..................................... ATACCTCAGACGCGATTGATGCTTTACAGGTAGGT 179349 37 100.0 35 ..................................... CTTCCGGAGTCATACTTTTTACAGCTTCAGGAATT 179421 37 100.0 40 ..................................... TCATAACTCTTGTAGTGATAGTTATACCATCCTTTTCAAA 179498 37 100.0 36 ..................................... TGCCATCGCCTATTCCGGTACCGAATTCGTCAACAC 179571 37 100.0 36 ..................................... TAGCTATCCATTGGTCTGTTTTTCCGTACCTATGAA 179644 37 100.0 37 ..................................... CCGGTAATAATTCACCCCTCCAACCCCCTAACAAAAT 179718 37 100.0 36 ..................................... ATGTTTGCACTACGAACTCGCCATCAAATTCACCAA 179791 37 100.0 35 ..................................... CTAATTTTTTGCATCCCTATAGTTGCACTAACAAA 179863 37 100.0 37 ..................................... AATGTACCGTTGGCAAGTGTGATCCATATTCCCTGAT 179937 37 100.0 36 ..................................... CTAATGGACGGAGAGGCAGTCATAAGTCTCATACTG 180010 37 100.0 36 ..................................... TTAAGGGTGGGGAATGTGAGTATAAATTTTAAAGAT 180083 37 100.0 37 ..................................... ACTATGTTCAATAACATAGTCAACCAGTCTGTTGGAG 180157 37 100.0 42 ..................................... TTTTTTCTGCTTCAAATAATGATAAATGTTTCATTCCGGCAG 180236 37 100.0 37 ..................................... CTCGATTGTATCTTTCTGAAACCCTTTGCAAATTTCT 180310 37 100.0 37 ..................................... TTAGTAAAAGCAATAACCAGAGCCAATTTTTCCAATT 180384 37 100.0 40 ..................................... AGATTTCCGCCAACAGATATGCGATCATTGGGCGAAACTT 180461 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 21 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGCGTTTTCAGTAATCTCAAATCAGTTGAATAACACGTTTCTATAAAAACATAATTGTATAGTAATACTTTTTTAACAAAAATTAAGATGAACTAGACTAAACTCGTTTTGCTATAAATACATTCCTAAATATATGTAATACAAATATAGCAATTACATAAAATTAAATAATACAAAATAATATTTTATTCCTTTGTTAATTTTGGATCTAATTCGGTTTCTGGATAAAAATAGTTTAAATTTGGTGTTTTTAAAAAATAACTAAAATATTGTTGGATTAGGCCGGTCTTTGAATCTATTTAAAACGACTTAAAATACAAAAGTTAAATAGAAAGAAAGGCATATACCAAAATGTTTCCAAACTGCTTGTTTCCAAACTGCTAGAAAACCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAATTGGGCTCATTTCAGACCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CCCGAAAAACCGGGATACGGCGAAGCCCGGATATTTTATTCGTGAGAAACAAAGTTTGCACGCATGGAATATGCGAGAGATAGACTTTTTTCAACTTTTCATTCATGAGACATACGGGAAGATATTTTGAAATTTTTAGAAATTGATCTATAGATGACTGTTTGGAGACAATCAAGGGTTTTCCCCACTTTCAGTCATAACAGAAATTCATTCACACGTTACCTGTTTTGTACGCTTTAATTAAATTATTGAAGAGCATTGAATATATTGAATATATTGAATCCATTGGATACATTGGATAGTACTGGATATTGTCAGTATTTGAAAACATTATCAACATTATAGTATATTGTTAAACATTAACGAACATTATTGGATATTCTATACTTTTCTTGGGCACTATATATTATTGTTAAACATTATAGGATACTATCGGACATTACAGAATCTTATTGGGCATTAATAGCCGTTATTATATGTTAAAGGCCATATTGAATAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 186501-192253 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJBJ01000019.1 Methanosarcina sp. DH1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 186501 37 100.0 34 ..................................... AGGTTTTCATAGGCGGTAACAGTGTGCGTGTGGC 186572 37 100.0 32 ..................................... TTATAAAAAATATAATATCCAATATGTTTATG 186641 37 100.0 37 ..................................... TGACGAGGATTAAAGAGATCTGTGATTTGTATCTACG 186715 37 100.0 36 ..................................... TATGCTTGCTATGCTCGGTACTGTCGTCAACGCCTC 186788 37 100.0 35 ..................................... ATAAATATCTCCGTATTATCATTGACGGCAGAGCC 186860 37 100.0 55 ..................................... TTTTTTTCGATCCGAAGAATATATTTATTATTTTCCCCCGATATTAGATTTATGT 186952 37 100.0 38 ..................................... TTACTATAAGTGCCCCTAGCACTCTTAGATTTACACTT 187027 37 100.0 36 ..................................... TTCATAGTTGCCTCATTGGCAAAATATCTTTCAGCA 187100 37 100.0 35 ..................................... TGAATTTCTGAGTATCTCTGCTTGTGTTTTTGTGA 187172 37 97.3 39 ...A................................. AGTTTTACTATTGTAGGTATAGTATGCGAATACTGCAAC 187248 37 100.0 40 ..................................... TGTTTTAAAATATAAGGATTACTATTGTTGCTGAACATCT 187325 37 97.3 36 .....G............................... CGATATCTTCAATTATGTTGTTTGTTGCTCCTTCCT 187398 37 100.0 37 ..................................... TTTTTTGACAAGCCGGGATCCTACATCGTATTCCACT 187472 37 100.0 34 ..................................... GTGTATTTATGTCCTTTGCTTTTCAACTGTTGTT 187543 37 100.0 37 ..................................... ATTCTGCTCTTTCTGGCAACGTGTAAAGAAGCATTCT 187617 37 100.0 36 ..................................... AGGGATTATCAAACCCGTCCTCGCAATCTGTAAGCG 187690 37 100.0 37 ..................................... TCTTTCCGATAAAGCAGATTGACAGCGGTAACCAAAG 187764 37 97.3 35 .....G............................... TCCGATACCCGCTCTTCTTTATCGATCCGGACAAG 187836 37 97.3 35 .....G............................... TGAGAGCCAGAAGTGGGCGCTTGCCCGATGATGAT 187908 37 97.3 37 .....G............................... TTTGGTATTATGCGATGATTATTTAGACTATAATCTT 187982 37 97.3 36 .....G............................... TAGGAAATAAACTAAGGAAGTTCGATACTAATCGGA 188055 37 97.3 33 .....G............................... AAAAGAATTGCTTTCTTTGTGTTCGTGTATATC 188125 37 100.0 37 ..................................... CAAGTTTTGCATCCATTGTTACCACCTCTAGGTATAA 188199 37 97.3 40 .....G............................... TTATTTGGGGGTATTTTATCTCCTCCCTAGTATCTTTTTG 188276 37 97.3 38 .....G............................... TTAATATCGGAGCGATTAGACTTTTATTGTCGCAACGA 188351 37 97.3 37 .....G............................... TTTGTTTTTGAGCCATTTTAGGCTAATAATTTCTATT 188425 37 97.3 38 .....G............................... TATTGAGGATTTCGAGTGTTACCCAATCGCTGTCTGAC 188500 37 97.3 35 .....G............................... CAGGAATACACAGTTCTTTTAGTATTTCCGAATAG 188572 37 97.3 40 .....G............................... CCCATCTGACTTCACCCGGTTTCTTAAGTGCAGCTGCACC 188649 37 97.3 36 .....G............................... TCTCCCTTCCGGCCGAGATCCTATCCGCGCTTCGTA 188722 37 97.3 35 .....G............................... TCTTTGATTTATCTACATACCATTCTCCGTGCCCT 188794 37 97.3 39 .....G............................... CTTTTTATTTGATTTCTTCCCATACTAACGCTCTTTGCA 188870 37 97.3 34 .....G............................... TTAGGATTGGAGGTAAATGTCTTAGCCTCTTTTT 188941 37 97.3 34 .....G............................... TATCAATACGCTCTGCAAAAATTAACCTCCTTTT 189012 37 97.3 38 .....G............................... CCAAAAATATTATAGTTCCTGCTCATTGTCAGTAAGCA 189087 37 97.3 35 .....G............................... TAGGTGTTTTATAGCTTAGAACTTTTTGCCTCTTA 189159 37 97.3 34 .....G............................... ATTTCCTTACTCTCGATAATGGCAGTAGATATTA 189230 37 97.3 34 .....G............................... CAATAAACGTTCTTAGCGGCGTCATAGATAGCTT 189301 37 100.0 35 ..................................... AAAGTGTGATCTTTTTCATTTTGAAAACGTCTTCA 189373 37 100.0 35 ..................................... GCTTCTTCACACTTCCTGGCATTGGCAGACATGCA 189445 37 100.0 35 ..................................... TTTTTGCGAAATAACCAAAAAATTCCATTACTGCG 189517 37 100.0 35 ..................................... TAACTTCCATTTTTGGTTCATTAATATTATGAAGT 189589 37 100.0 36 ..................................... TTGTTGGTAATATTCATACCACCACAGTACCTTTTA 189662 37 100.0 36 ..................................... AGAGGAACCATCAGCATCATGACCCTTGGCGCAGAA 189735 37 100.0 37 ..................................... CAAAATATTTTATCTTTTTTTAGTCTTCTTTTTTTTT 189809 37 100.0 46 ..................................... AAGAGTAAGATCTTCGATGCTTACCTTAAGTTGTTCGCCTATTTAT 189892 37 100.0 35 ..................................... TACGGCCTGAAGCCTTCCTATCTAAAGCCTTATTT 189964 37 100.0 35 ..................................... TGAATTTTATTATTAACTTCATTATATCATCTCCT 190036 37 100.0 37 ..................................... TATTTTTAATCCAAGTTCACTATCAATCCATGACGAT 190110 37 100.0 38 ..................................... AATTACTTGTGTTCATTTACTTCATTTTTCCCCATCCA 190185 37 100.0 34 ..................................... TCCTCAGTTCTAACAAGTTGCGGCGCCACTTCCG 190256 37 100.0 34 ..................................... AAAAAGCTCAAACAATAACTTACAAAATGTTACC 190327 37 100.0 35 ..................................... CTCCTAACATTATTTTTCTTTGCTCTCCTGGATGT 190399 37 100.0 37 ..................................... AAAGATTCCTTAGCCGCAGGGATTGCTGCCTCTGATG 190473 37 100.0 36 ..................................... GCATGAACCCAGATATTCCCGATCTGTGAAGTTTAA 190546 37 97.3 37 .....G............................... CCAGGAATCGGTATAAGAATAGAACCTCCGGCAAAGA 190620 37 97.3 40 .....G............................... TTATGGTTTCCTACTCGTTGTCAACAAGCAGTGTGGTGAT 190697 37 97.3 35 .....G............................... AAAAATATAATTTGGATAACAATTACATTCTTTAG 190769 37 100.0 36 ..................................... TTCATATATTCCTTGCTTTTCACAACAACTATAGAA 190842 37 100.0 34 ..................................... TGTTATATTTTTATTCACTTCATCACCTTTTCTA 190913 37 97.3 35 .....G............................... GGCAACTGCTCTTGCTGCCTGTGTCTCGTCTACTT 190985 37 97.3 37 .....G............................... TAATAGAAAGAAATATCTTATTATGATCACCTCTTTT 191059 37 97.3 35 .....G............................... CGTATTTTAATCTTAAGTAAATCCATGCAAAAATA 191131 37 97.3 36 .....G............................... ATCTTTTGTTTTAAGTCCGTTTATTGTTTTTGTTAC 191204 37 100.0 35 ..................................... CAATATTACTATCGGTCTTCTTGTTTTCCTATACA 191276 37 100.0 34 ..................................... ATCAAAATCTCTCAATAACTCGGCTAACATTATA 191347 37 100.0 35 ..................................... AACAGACAGGTGTCGACATCACCGGCAAGACTGAA 191419 37 100.0 36 ..................................... TACTTTATAACTTTCATCGTATCACCTTTTTATTTA 191492 37 100.0 36 ..................................... CAAGTATTTTTAAGTAAGGCATTAAGCTCCTTAAGT 191565 37 100.0 36 ..................................... TTTGGAGTGTTGCACATCCTGCAGATATCCCTACAA 191638 37 100.0 35 ..................................... ATAAAACTGTTGCCTTTAGAGAAAATTTTTGTTTT 191710 37 94.6 38 ...................T..............G.. CTGACATATTCATAATTTCAACCCCTAGTGCTTCTGAA 191785 37 94.6 37 ...................T..............G.. TTTAGAAGCCCCATTTCCTTCAACAAGCTATTCGCAA 191859 37 94.6 35 ...................T..............G.. CTTTAAGAACGTATATAAAAAAACTTGCTACGGCT 191931 37 94.6 33 ...................T..............G.. TCCCAAGCATTGCCACAATGCTCATCTCCCCGT 192001 37 94.6 34 ...................T..............G.. TGCATTGACGATTAGTTTTGTTATTTTTTTTCCA 192072 37 94.6 36 ...................T..............G.. TAGAAGAAATATCAACACTGACACTTCCACATGACG 192145 37 94.6 35 ...................T..............G.. ATAATTAAAACTCATTTTATTCCTCCGTATAATTT 192217 37 94.6 0 ...................T...............C. | ========== ====== ====== ====== ===================================== ======================================================= ================== 79 37 98.5 36 GTCGAAAAGTAGCTTCCACGAAAACAAGGATTGAAAC # Left flank : AAAATCCGAATTCTAGAAGTTTGTTACCCGTTTTCCTGAAGAATCACGCTTTTTCTCAATTTGACCTTTTATTTTTCAAAAAATCAATATCAATAAGTAACATTTTAAAGAACGGTTTTGAAATATTTTAAAAGAAAAGTGCCTTTTTTCTTTTGACCAAATATCTGAAATTCACAATTGCGTGAAACTGTGGTCATTTCACTAAATGTTATAATGTATCTCTCATATCATACTTTGTAAACCATTTTTAAAAAGTGTACACATATGTACATTATCAAAATAATAATTTCGCTATGCTGTAAGTGAAAATGCAAAAGTTTAAATGGTATCTGTCCTTATATACCCTTTAGCTATTTGTCGACGGACAGATTTAGTTGACCAAAACAAAAACAAGTAAATTTCAAATTTTATACAGTTCAAGCAAAAAAGAAGTTTCTTGATGTTTGTTTATAGGTTCAAAATTTCCTGAGAATTTGTTAAAAATCAGGGAAAACGACCCT # Right flank : CAGTTCCTTGCTCTCCGTAGTCGGTGTCTGGGTAAAGTAATAAAACAACAACCGCCACTGAAAAATGGATTGAATTCCTCGCTCGTTTTTATATTTTTGGTTTTTATATATATCAAAAGTCTATTTCTATCGAGAAGTAGTTCACGAAAAAGTATCGAGTCCTTTACTTCGGAAAAAAGCCGAATTCTTCGCAGCTAAATATATCAAGTTCCGTAGATGATTGAAAATTAAGAATCATTTACGGAGGTATCTTAATCCAGAAGCAAAAACTGGCCGAAATTCAACTGAAACTGTATAATAAAGCGAAAAGAAAACCTGAAAAGCGGTTTAAAAAGCTTAAAAAACTGATTTTGAAAGACGAGATCCTGTACACCGCCTGGGGAAATTTAAACCGGAATACAAAAGGCACTGGTTTTGATTCTCTTACTATCCGGCAGGTAGAGGCTTCAGGGGTCGAAAACTTCATCCGTTCAGTAAAGAAAGAGCTTAAAAGTGAAAAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAAGTAGCTTCCACGAAAACAAGGATTGAAAC # Alternate repeat : GTCGAGAAGTAGCTTCCACGAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 37439-39052 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJBJ01000020.1 Methanosarcina sp. DH1 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 37439 32 100.0 33 ................................ ATGGTAGATCCGGGCAGCAGTTCGTACCGTTTT 37504 32 100.0 34 ................................ CATCGGGATATTGAGATCTTTGTTAATTTCTATC 37570 32 100.0 31 ................................ ACCGTAGATGAAATTAAAAATGCCGCGACTG 37633 32 100.0 34 ................................ AGAGATGGCACTTTGAGCAGGAGCGTCTGACAAC 37699 32 100.0 35 ................................ TTCTAAGACGTGTAGTGTTTGTGGGCACAAAAACA 37766 32 100.0 34 ................................ TCCTACTAAGATTGACGGCAAGCTGTATGCCCAT 37832 32 100.0 33 ................................ CTTTCAGTTAGCGTGGGAACTGTAATGGCGGGC 37897 32 100.0 33 ................................ CTCTCCAACTATTCGCAACTTGTCCGTCTACGC 37962 32 100.0 33 ................................ ATCTTGGCTAAGTCCAAAAGCTTCACAGCATTC 38027 32 100.0 35 ................................ CTGTTGTTCCAGTTGATCCTCATTATACTTCTCAG 38094 32 100.0 34 ................................ TAGACCTCGTAGATCAATATAATTTCAAATTGTC 38160 32 100.0 33 ................................ TCCATTCCCAGGCATATTTGAACCTGCCCTGAG 38225 32 100.0 33 ................................ CTGAAGTACATCCGATAAATACATCTGTTCAGC 38290 32 100.0 34 ................................ TCGTCAATTCCAGGCCCAATAATATCATAATATT 38356 32 100.0 33 ................................ AAATTATCAGATGGCGCCAAAGAGCTCATTGAA 38421 32 100.0 35 ................................ TTAGAGGAACGTGTACGAGCAGCAGCATTAACCGA 38488 32 100.0 34 ................................ TTCCACACAACATGAGTATTATCTGTCCAAATGG 38554 32 100.0 31 ................................ TTTGAAGAACAGTGTAATACCGCAATCAAAG 38617 32 100.0 35 ................................ TGCGTTAAAGATGAAGATTATGAAAGGTATTTAGA 38684 32 100.0 35 ................................ TAACTGTTTAGATGCTAAAGGCGGGATCTTTTGAG 38751 32 100.0 33 ................................ CCTGTGATGGCTTTGGGGAGTAATCCCCTGAAA 38816 32 100.0 38 ................................ ACCTACACTCCCGTCAGCTTTGTTCATAGTTCTTGCAG 38886 32 100.0 37 ................................ GTCATGAGTCCCGTCGCATGTATAATCACCAGTTGGA 38955 32 100.0 34 ................................ CCCTTACTTTGAGGGCTAGGATAAATTCATTATC 39021 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ====================================== ================== 25 32 99.9 34 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : ATATTGATGGATATCCACCATTTTTTATGAATTGAGGTGTTTTTAGTGATGGTACTGGTAACTTATGATGTGAATACAGAATCAGAAGGTGGAAAAAGTAGGCTGAGAAAAGTGGCAAAAGAATGCGAAAATTATGGACAGAGGGTTCAGAACTCTGTATTTGAGTGCCTTGTAGATCCTGCTCAGTTTGCACAGCTAAAACATTCATTATGTGATATAATGGATGAGGAGCGAGATAGCCTTAGATTTTATTACTTGGGTAAAAATTGGAAAAATCGAGTAGAGCATTTTGGTGCAAAAAAAGGATACGACCCAGAAGGTTTATTAATTACATAATCTCTGCGAACCTGTAGTGAACATTGATTTACTGGGAGGTTCGCAGGAAAGATCCATTCATAATATTTATTTTTTGTGATAGTTTATAAATAAATTCAATAACTTAAATATTTCCAAAAAATTAAAAAGCCAACTGGCTAATGTATAGTTTGAATAAATTTACG # Right flank : TCCTTTGAAAAAGAAAACGAGGTACTAAGAGCTTATCCAAAAAGTCAGCAACGAATGTTGAAAAGTTACAATGGGTCTAAATATCCGGGCATACGTTCTGGTTTTGCATATTGCATATTGTAAAAGTTATAGTAGATAACCACTTTTCGGATAGGCTCTAAATAGTAGGGCGCACAAACTTTTCTTACAAGTATCAAAAGCATCTCCATGACAAATAAAAGTCGCAAAGAAAATGACACTCATTCGTGAATATTTTCAAAGAACTTTCTTATATTGAAAAGGTCATCGGTTTTTCCCAAAATAACGCAGGCATCTTTTGCCTGGAGGAGGGAGTTTCCATCAGGAACATAGATCATTTTCGAATCCCTACGAATAGAAAGGACTGTCACTCCATATTTTTTCCTTAATTCCAGATCTGCCAGGGTTTTTCCATCGAAACTGGAACCTTCTCCTACTTTAACCACCTGAATATCGACTCCTGGAAGCCCACTCTTTAAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 161849-169846 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJBJ01000020.1 Methanosarcina sp. DH1 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 161849 37 100.0 36 ..................................... AAAATTGGTGATAAATTATGGAAAAACTAACTCTTG 161922 37 100.0 34 ..................................... TATTAATCGATTCTTCTTCATTGAAAAAATGATG 161993 37 100.0 35 ..................................... TGTAATGACGGGGATAGATCCAAAGTTTATCTTAA 162065 37 100.0 38 ..................................... TCAATTCCGATGTCATAAAATAATCCTGAAAAAATTTC 162140 37 100.0 35 ..................................... CTACAAACTCACTTTTATACTGTCCAGACGTGGAT 162212 37 100.0 35 ..................................... AGAAGAGCCCCCAACGGATCAGTCATAACTTTAGA 162284 37 100.0 37 ..................................... CTCTTGAATTAAACAATGAATTTGGGGCTAAATGAAA 162358 37 100.0 35 ..................................... TTATTATCGGAAAAAGCATGGAATTCCAACTAATC 162430 37 100.0 35 ..................................... TCTTCGCCCTGTGATTTTCTAACATCTTTCCATAT 162502 37 100.0 36 ..................................... AATATTGCTGATTAAAAAGTGATACCTGATCGGGTT 162575 37 100.0 37 ..................................... TTATAAAATTACATATTATAAAAAATAGATTAGTATT 162649 37 100.0 37 ..................................... CTTTTCCGATTTTTCTTGAATGTAATGTACTTCAAGT 162723 37 100.0 35 ..................................... CTTCGACGTTCTGTTTTGTAGTCTTGTCTTCGGGG 162795 37 100.0 35 ..................................... CTTGATACATTTCTCTTGCTTTTTTATCCCAAGCT 162867 37 100.0 36 ..................................... TTTATTCCTCACCGCGATTCTCAGCCACTACATTAA 162940 37 100.0 40 ..................................... AAAAACGTCGGTCTAGATCCAAAAACCGGTGAAATCGATT 163017 37 100.0 37 ..................................... TAATTCACATCGGTTTACCTCCAGCAGTCCATGAATA 163091 37 100.0 33 ..................................... TTAAAATGGAAGACGACTCAATCATAAAAAAAT 163161 37 100.0 36 ..................................... GATGATACTGTAGAAGCTTTAGCAGATGCTCAGACC 163234 37 100.0 44 ..................................... CAAACCTTGTAGCCTTGTCAGTTTCTTCGACTTTCAAAAGTATA 163315 37 100.0 36 ..................................... TTGTATACTGTCTGAGGTTCAATCAGCTCGAAATAT 163388 37 100.0 37 ..................................... TGAAAATGTATTTATTTTTAAGACTCGTGTACATATC 163462 37 100.0 35 ..................................... ATTAACCCTCTTCTTTTTCATGGAGTTATAACTAT 163534 37 100.0 38 ..................................... CTATTGCTGAAATCAATGAAGTCCGAGAAAAGTTTGGT 163609 37 100.0 37 ..................................... ATTTTCTTACCCCCTGGGATACTAAAAATTTAACGGT 163683 37 100.0 36 ..................................... TGCAAAACCTTAAATATATTGCATAAGTATTATATT 163756 37 100.0 37 ..................................... ACTAAAGACTACACATTAATAGTAATGGAAGGCCGAA 163830 37 100.0 36 ..................................... ACCAAGTGTCTTTAGCATCATCAAATATCATTATTT 163903 37 100.0 37 ..................................... ATCGACGGTTAAAATCAATAGATCATTTGTGGAATAA 163977 37 100.0 35 ..................................... CATTTTTTGATGATATGGCCGGCTCTTCTGTAGAT 164049 37 100.0 35 ..................................... GATAATTCAACAGGGTATGCCAAGAAGGCAGCCGA 164121 37 100.0 38 ..................................... ATAGCCTCTATAGCATCTGAAACTTCGACAACATTTGA 164196 37 100.0 35 ..................................... TTTGTAATGTATCCGGCAATAGATCCCTCTGCATA 164268 37 100.0 36 ..................................... CAATGTATTCAGATGATCAATGTGTAACATGGACCG 164341 37 100.0 36 ..................................... TACTCATGAGCAAACGCACACCTTTCTGGAGTCGAA 164414 37 100.0 35 ..................................... ACAAAGGTATTTTCAAGAGCTTTTACTGCCGCGGA 164486 37 100.0 36 ..................................... AAGGTGTGCCTATTTGAGATATAACTATTTAACTTT 164559 37 100.0 36 ..................................... CCCTGGCAGGTTTGTTGAGAAGGGAACAAACGACGA 164632 37 100.0 36 ..................................... CAATGTATTCAGATGATCAATGTGTAACATGGACCG 164705 37 100.0 36 ..................................... TACTCATGAGCAAACGCACACCTTTCTGGAGTCGAA 164778 37 100.0 35 ..................................... ACAAAGGTATTTTCAAGAGCTTTTACTGCCGCGGA 164850 37 100.0 36 ..................................... AAGGTGTGCCTATTTGAGATATAACTATTTAACTTT 164923 37 100.0 36 ..................................... CCCTGGCAGGTTTGTTGAGAAGGGAACAAACGACGA 164996 37 100.0 36 ..................................... CCCTGGCAGGTTTGTTGAGAAGGGAACAAACGACGA 165069 37 100.0 36 ..................................... ATGAAATCGTTTCTGATGCACAAAACTGGGTATCAC 165142 37 100.0 36 ..................................... GGGAGTATGGAATATTTGATGATAGTGGTAATCTCC 165215 37 100.0 36 ..................................... TTCCCGGACTCTCTACACGCTCGCATTTCTACGATA 165288 37 100.0 36 ..................................... ACCAGACTCTACAACTGTTAAAATTATTAATATTTT 165361 37 100.0 37 ..................................... TCTGAATATTCGGTTTTAAACTCTTTTTTCTTTTCTG 165435 37 100.0 34 ..................................... TATATTTTGCCACTGGTGCAGGATCTACAGACGA 165506 37 100.0 37 ..................................... AAAAAAAGGTTGGTGAGTACATGGTTAATGACCGATA 165580 37 100.0 36 ..................................... TTCCTTTTTTTCGTCTAAATAGCTATTCAATTGCAG 165653 37 100.0 35 ..................................... TAAATGCACTGATAAACTTAATGTAGGAAATCAAA 165725 37 100.0 35 ..................................... ATACTAAATAGGTCGTGGTAGCCATCGAGGGAAAG 165797 37 100.0 34 ..................................... ATCTCACGAATTCAAACGGTCCGCAGGCTCCAAG 165868 37 100.0 37 ..................................... TTATTGTGCGAGGTTCTGCTTCATCCCGGCGCTAAAG 165942 37 100.0 37 ..................................... AATGTATCTGTACTACCTATATTATTATCGTCTCCTA 166016 37 100.0 37 ..................................... TCAGTATATTTGTACCCACATGCCTTGCAGATCTGTT 166090 37 100.0 34 ..................................... GAGTTTTCACGGCCTAGACCAAATAGGGTTTGAT 166161 37 100.0 36 ..................................... AACAGGTGATCATATGGCAGACCACAAAGATACACT 166234 37 100.0 36 ..................................... TCCGCTTGGTTCTCAACTGATTCAATATTCGCATAT 166307 37 100.0 34 ..................................... CTTTTACGGCTTCTCCAATTGAAGAAACTGTTTT 166378 37 100.0 35 ..................................... ACTGTATTAGCCAGATCAACAGGTAAAACAACATC 166450 37 100.0 38 ..................................... AATGGCTTGCTGAGAATCAGATAATCTGTTAACTTCCT 166525 37 100.0 38 ..................................... CAACAAAGATATTAATTCAAGACTGATCGCTCAGAATC 166600 37 100.0 36 ..................................... CGCAACCGGGGGGATGCGTGATGGTAGACATACTGA 166673 37 100.0 35 ..................................... AAGGGGCGGAGAATCGGAAATACTCAAGCTGTTCC 166745 37 100.0 38 ..................................... ATTCCGTAATGCTTTGCTTTGATGAAATGACCCTCCTT 166820 37 100.0 36 ..................................... TTTTGTTGTGAGCGTAGCGATACAACTATAATTTGA 166893 37 100.0 35 ..................................... CTTACTCATCCTACATCAAATGCGCGTCTTATAAT 166965 37 100.0 35 ..................................... CCAAATGGATTATAACGCTCTCCCACCATTAAATC 167037 37 100.0 36 ..................................... CCCTTACGGTTGTCGGCCATATTACGTAAGTGCATA 167110 37 100.0 38 ..................................... TTTTAGCATGGCTCGCAATAAGTCTTAATTCAAGTGAA 167185 37 100.0 38 ..................................... ACCTCATGGATAAAACGCTATGAATATATTTAAATTTA 167260 37 100.0 35 ..................................... TTTTTGAACTCCGGTTTGATAGTTCACCATTTTTA 167332 37 100.0 34 ..................................... AGCGATACTCCTATAACCCTCCAATCGGGTTTAA 167403 37 100.0 35 ..................................... TCATTTGCGAAACACGGAATTGATCGGGCACGGGT 167475 37 100.0 36 ..................................... CTCTCGGGGTTGAAAATCTCAAATGAAATATGAAGG 167548 37 100.0 35 ..................................... ATTTCACAATAATCATTAACATTTTCTGAATGGTA 167620 37 100.0 36 ..................................... GTTTATCAGTGACTTTAGAAGCCGTAGAAACCTTTT 167693 37 100.0 38 ..................................... TGCAACCACCCGAGCGAAAGGTATCATGTATGTGAATG 167768 37 100.0 35 ..................................... TAAACAACTTCACTCTGATATGCAGGCATATTTGT 167840 37 100.0 35 ..................................... ATAAATCGTGATGGTACTGGTGCTATTGCGGAAAT 167912 37 100.0 36 ..................................... CGAATTCAGCGGCTATCAAACTAACTGGTGCTGATA 167985 37 100.0 35 ..................................... GACAGTATGAGATATCTGTTAATGTCTGCGAGTTT 168057 37 100.0 36 ..................................... TCCATAAGTGAACATATAGGCATATTGTAACCTGGA 168130 37 100.0 36 ..................................... TACTGCTGGATCTCAGCTTTGGACCATGCCGAAATG 168203 37 100.0 35 ..................................... TGATATTTCCCACTTTTGAAAATATAAATATCTGC 168275 37 100.0 36 ..................................... AAAAATGGGTCAAAATCATGCTAGAGATACGTGAAT 168348 37 100.0 38 ..................................... TGAGGGAATAAACGATGCCTGAACATGAAAAAAAATCT 168423 37 100.0 40 ..................................... CCCACCACCGAAGAACTAACAAATTTTTTTGAGGCATGAG 168500 37 100.0 36 ..................................... CTGTATTTTGACACCAGTTATGAGACTGGAATCGTA 168573 37 100.0 34 ..................................... CAGTCTTGAAAATCGAATATTACAGCATTCGAAT 168644 37 100.0 35 ..................................... CTTCTTCAATTGCCTCTCCATATTCCATACATTCC 168716 37 100.0 37 ..................................... TTCCTTCTATGGACTCGCACCGGTAATATTTCGCGCC 168790 37 100.0 35 ..................................... GCCACAGCTCACGCCAGACTGAGGTTATCGAATAT 168862 37 100.0 34 ..................................... GCTTTGGGTCAACCTGTGTAGTTTCTCCCGTAGC 168933 37 100.0 37 ..................................... ACAGATGAAGATCTTGATGAAACAGAAAAGTATTTCT 169007 37 97.3 35 .................................G... TAATTGGGCTTTAGAACAGAAGATTAAAGCTTATC 169079 37 100.0 36 ..................................... CTACTGTTGTTCCCCAGCCTTTTTCATTTAACTTGC 169152 37 100.0 36 ..................................... AAAAACTAAATATGGTTCAGCGGAAAGATCAGCAAG 169225 37 100.0 37 ..................................... GTAAAGAAGATGAAAAGATGTATTTCGAAAAGGCTGT 169299 37 100.0 35 ..................................... CCTTACTGTTCTCATTATGACCAATATGCTCCGTT 169371 37 100.0 36 ..................................... TGAACTCCCCCCCTCTTCCAAAAGGATATTCGCCCT 169444 37 100.0 36 ..................................... ATCCTGCCGTTTGTCAAATCTCCGGAATCATGTCTA 169517 37 100.0 36 ..................................... TCTTACTGCTTCCGCTTGCGCTTTTATTGCTTCCTC 169590 37 100.0 36 ..................................... CCATGCATCTTCGTTAGTCTGTGTCTGCTGTGAACT 169663 37 100.0 38 ..................................... TTGAGTTGGGGGATATCACAGACGCGATTGATTTGGCT 169738 37 100.0 35 ..................................... TCAATAAGATTCTGAATTTTAGTAAGGTCATATTC 169810 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 110 37 100.0 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GATAGCGACGTATTCATTGCTTCAAAACAGCACCATATAAAGGGAATAGTGGATGAGGTACTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAGTACAAATTTGCCAAGTATAAAGACAAGATTTTTAAAACATATAAATTTCAATTGGTTTTGCAGGCTCTTTTGATCCGGGAAAATTACAATATTGAAGTAAACCGTGCTTATATCTGTTTTACTCGAAGCAACAGCCTGGTTAAAGAAATGGAAATTACTACTACTGATTTCAAAAAGGCTGAGAAAATTATTGAAGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACCACTAAATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CAAATGAACGCATACTTACAAAGAATACTAACAAACCATTTTTAGTAAATTCTATTAGAGTCGATCCTATGTTAAGTTAGATATGTTAATATGCTGTTATAACATGTTATAATATATGTCTACCATAGCCATTGACCCAGATGTAAAGGAATCACTTAAAGAATTTAAGATCACCGAAAACGAGTCTTATAATTCCATTATCAAACGGCTCATTGTTAAAGTTAAAGAAACTGCAGAGTATAAACCAATGTTCCCAAAAGAAGAGAACACTGAACGAAGAGAATCACATGTCAAAGATTTCGATGCATGGTTGGATAGGAAACTCATAGAAGACAAAGAGATCTTAGACGCACTCGGAAGAAAGTGATATGTTGATTAGCTTAATTGATGTCTTAAAAATTCATCAACGAGTGATTGACTATGACAAAGAAGAGAATCCTGACGATTATACACCTGCAATTAGATCTCTTGCTACATTAGAGTTAATGTTTGAATATATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //