Array 1 15448-17566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIY010000040.1 Clostridium saccharobutylicum strain DJ169 NODE_40_length_29758_cov_21.117718, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15448 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 15514 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 15578 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 15644 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 15710 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 15775 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 15842 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 15907 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 15971 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 16037 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 16102 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 16167 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 16233 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 16298 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 16362 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 16428 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 16494 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 16559 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 16624 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 16688 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 16754 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 16819 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 16884 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 16950 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 17015 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 17081 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 17145 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 17212 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 17277 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 17343 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 17407 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 17473 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 17537 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 26385-26212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIY010000003.1 Clostridium saccharobutylicum strain DJ169 NODE_3_length_286106_cov_31.788431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 26384 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 26315 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 26246 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 157684-158825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIY010000005.1 Clostridium saccharobutylicum strain DJ169 NODE_5_length_227518_cov_26.473397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 157684 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 157750 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 157816 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 157881 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 157946 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 158012 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 158076 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 158141 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 158207 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 158272 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 158338 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 158404 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 158469 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 158534 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 158599 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 158664 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 158730 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 158796 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //