Array 1 256382-257087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJD010000001.1 [Clostridium] scindens strain SL.1.22 EMKONICA_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 256382 33 100.0 35 ................................. ATCTACTGTGTTACAGCACTATCAAAATGATCTCT 256450 33 100.0 34 ................................. ACAAAGACAATAATGGTTATGGTGACCGGTATGA 256517 33 100.0 33 ................................. TTCTCATTTAAGGCCTCTTCGTCTTCCGTCATC 256583 33 100.0 36 ................................. AGAGCGGGATCAGCGCCTCCCCGATCGGCACGAGAA 256652 33 100.0 34 ................................. ATAGTTGGCTCTGGCAGGAGCCTACAAATAAAGT 256719 33 100.0 34 ................................. CTCAGCCATGTGAAGAATGCGCTCAGAAATCTGC 256786 33 100.0 33 ................................. TAATCCATTGTTAAGCGCCGCAATATCGGCATC 256852 33 100.0 35 ................................. ATCGCATCCAATTCAATTTCTGCCATTTTCTCACC 256920 33 97.0 35 ......................A.......... ATCGCATCCAATTCAATTTCTGCCATTTTCTCACC 256988 33 97.0 35 ......................A.......... CATGTGTCCAGGGCATTGATGGGATTCTGTACTAC 257056 32 75.8 0 .........CA.-GC.A......AA........ | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 97.3 34 GTCGTTCCCTGTATAGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATTACAAGATATTTTGACGCAGGGGTAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATAAATTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAGAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGATATTAGAAAGGCTTATCAACGTCTTGGGAAATATAAAAAGTAGTAGAAGAAATTTAAAGATTAGATAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCAGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAATGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : TTAAAGCATAGCCAGCAATGCTACAAAGTCAAATGCGTCGATCCCCACATGGGAACGCAAATTGGATTATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTAAGAATCAGAATATAGATACCTCTTAATGGGCATAATAGTTTGATTGCTTACCGCAACAAAAAGCAAGGCTTATTTTTAAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAAGGATTTTTACGCAGAAATGCGAAAAGATTTATCAGTTTTGCATATATAGAGTAAATGCCTATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGTATAGGGAACGTGGATTGAAAT # Alternate repeat : GTCGTTCCCTGTATAGGGAACGAGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 176442-175671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJD010000006.1 [Clostridium] scindens strain SL.1.22 EMKONICA_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 176441 33 100.0 35 ................................. TTCAAATAATATCCCACGGAAACAAATCCTTCCGT 176373 33 100.0 34 ................................. TTTCATATTATGCTAAAATTCTTTCATGCCATTT 176306 33 100.0 33 ................................. GACAATTGTGTATCACCGGGTACAGGGTCTACG 176240 33 100.0 34 ................................. ATCATAACGACAAATGGATACGTCAGGGAAGGGC 176173 33 100.0 33 ................................. GTCATAGTGTCCAGGCTTTCAATTGCCCGTATC 176107 33 93.9 35 .........A........A.............. TTCAGCATCTGTTCTTCAATCCTTAACTGTCCATC 176039 33 93.9 36 .........A........A.............. GCAGACGGATATAATTGTAACCACTCCGCCGCAAAC 175970 33 93.9 33 .........A........A.............. AGTTCACGCAGGATATAGGATCCGCTCGGGATC 175904 33 90.9 34 .........A........A...A.......... GAGATCAAGATACAGAACAAGTATTTTGACAGGA 175837 33 90.9 35 .........A........A...A.......... AACATAGAAAGGACTACGTTAACGGGATATGAAAC 175769 33 90.9 34 .........A........A.....A........ ATAATCTATACTTACTTCTTCGTCACTGTCAGGC 175702 32 78.8 0 .....A.....T.A....A...C.A...-.... | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 94.4 34 GTCTCTCCCTGCAGAGGGGGAGTGGATTGAAAT # Left flank : CCGCCATTTTTGTGGAAGTAGGTGATAGAATGCTGGTGTTGATAACTTATGATGTAAATACAGAGACAGAGGCAGGAAAGAGACGCCTAAGAAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTATTCGAGTGCAATCTGGACGCCGCAAAACTTCGTCAGGTAAAGGCTATCCTGGAGGACATAATTGATAAAGAAGTTGATAGTTTAAGATTCTATAATCTGGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTTTAGTGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGAGTTTGGAAAGTTGTAATTTGTTGTGTTAGTGTTGGAAAAAGTTCTTTGATTTGACATTTTGCATAGGGGATTGGCGAGATATTAGAAGTTTTATGTGCAAAATTGCT # Right flank : AGTCGCAGATGCTAATGACTATGCCAGCACCAAAGCATTTTTCTATGTAGTGTATAAGTAAAATGAGTTATTCAAAACATACATTACGTAATGAGATGTTCCTTTCGTTCAGAAGAAATAGCGAAATATTTTCAAAGTGCGATAAAAAGGTATAGAACATAACTTTTCTTAAAGAAAAATAACAGCAGGCAAAACTCCGAATAATAAAAGTTAACTGATAGCTAAGGTTATGTCTTATAACAAAATGAGCATCACATACATTCCATCAGAAGCAAATGCTGCTATACTATAAAAGTAGTGGAAGATAATAACGTGTAATATACAGAAAACTGCATAAATAACATTTCAAAATTTCTATATTGACCGTTCGAAGATGGACGGTCATTTCTATATTTAAGTAAACAATATTCTAAAATGATAAATTCATAATAAAAGTCCTGGCAGATCCACTTGGTGGTAATTATTTCATATTCATTTGACAACTTGATTGATTTACAGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGCAGAGGGGGAGTGGATTGAAAT # Alternate repeat : GTCTCTCCCAGCAGAGGGAGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 186133-185022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJD010000006.1 [Clostridium] scindens strain SL.1.22 EMKONICA_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 186132 33 97.0 34 ..............A.................. TGAGCACGACGCGCGCTGCATATACAGCGATTTC 186065 33 97.0 34 ..............A.................. CCGATGTAATCCTCTGCTATATATTACCCTTCTG 185998 33 97.0 35 ..............A.................. AGAGATCAAAGATGACAGGCGGGTATATCTGTTGA 185930 33 97.0 33 ..............A.................. ATGAATAGCATGAAGAATCCGGGGACTGACCCA 185864 33 100.0 34 ................................. ATTATGGCTTATGAAGAATGCAAGGAGATTGTTT 185797 33 100.0 33 ................................. ATTATGTACTATTATTCTCTATTCATCTTCGTC 185731 33 100.0 35 ................................. ACTTCTGGCGTAGCGTTCTCATGGATGGTGTTTAA 185663 33 100.0 36 ................................. CTTCCATTCCTGTAGTACTCCGTGATTCCAGCCTTG 185594 33 100.0 34 ................................. AGACATTCATGGATTCTATTAGAAAATATGAGTC 185527 33 100.0 34 ................................. TTCGTATGTATCCCATTGCAGACTGGCTTATTCC 185460 33 100.0 34 ................................. TCCGGTGCCGGAGCAGAAGCGGGGCTTGGATTAA 185393 33 100.0 36 ................................. ATTAATTCGGTCATATTCTGCTATATTCCGAATCAC 185324 33 100.0 34 ................................. TTTCAGGCTGTAGGCTCCCCATTCCAGGTTCTCG 185257 33 100.0 35 ................................. GCAGGATCATTCCGGGAGCGGTAAGATTTGACGGA 185189 33 100.0 33 ................................. GTGGAAAAAGGCGCATAGGTCTTTCGCGGCTCT 185123 33 100.0 36 ................................. ATTTCCACCTTGTCCGCAGGAATGAACCCGAACACC 185054 32 87.9 0 .....T.C........-.A.............. | A [185043] ========== ====== ====== ====== ================================= ==================================== ================== 17 33 98.6 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCAAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAAAAATGATTGTGCGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGGAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGGGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : AGAGGATGCTCAAGATAAATAACAATATTGCCAAGTTGCCCTCTATGAGGAAGGAGAGAGAAAACGAAATATTATAGTTTTGAACGTTTATGGAAATATTCGATATTTGTATTTGAGAAGCATGTAAGATTATGTCTTACTTTTTGGTAAAAAAGAAGCGCCAGTGCGGAAACTGGAGGGTGTGATCTATGAAGGGGAGTTGAAAGTTTTAATAATAATTAAGCAGAAAGACCAAATGACAATAAAGTTATAATCATCAAACGGGATAGCAGTTCTACATGATGAAAATTAGGTATTAATTATATTTAGTGTCCGACAATATGTTGGATATTTTTGTTTTAATTGCCAAAAATGTGTGATAAAATAAAGAAAATGATAATAATTGACAAATAACAGGAAGTAAGTAAATATGAACGATCCATACATTGCACATTTTTATAAAGACAGTAATAATACTATACAGATACAATCCGTTTCCGATCACAATCTTAATGTGGCTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : GTCTCCCTCTGCGAAGAGGGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //