Array 1 165685-162415 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFP01000023.1 Vibrio cholerae strain N2707 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165684 28 100.0 32 ............................ TAAATCCTTAAATCAGTTGGAGATAATCCTAT 165624 28 100.0 32 ............................ ACAAGGCGTTAACGCCCTGTTTGACCGCTTCC 165564 28 100.0 32 ............................ GGACGCGCCAAAAATCCCCTCATGCTCACATT 165504 28 100.0 32 ............................ GTGAACTAACTACGGTTAACACCACCATCCCG 165444 28 100.0 32 ............................ AAAACACGGTCATGCGCTGGAATAATGGTGTT 165384 28 100.0 32 ............................ GCAAAACGGGTGAATTAACGGCGGGCAAAAAG 165324 28 100.0 32 ............................ ATCAAGCCGCCCTGTTCTGATGTATTGCGCTT 165264 28 100.0 32 ............................ GATTCATAAAACCCCGTACAAGTGTCAGACTC 165204 28 100.0 32 ............................ GTCAAAGACTTTATGAAAATTGATTTATCTCA 165144 28 100.0 32 ............................ TGAAATACCATCAGGATAACCAGATTCATAAA 165084 28 100.0 32 ............................ TTACACTTGTGTCCGCACTTGTCGTTATAACT 165024 28 100.0 32 ............................ AATATTGAAGGCATGCAACCATTGGAGGTTAT 164964 28 100.0 32 ............................ ATCGGAGCTAGACGACCTTAAAAATACTTCGT 164904 28 100.0 32 ............................ TCAGAGCGCACTTGTGCGCCCTTGTGATAAGC 164844 28 100.0 32 ............................ GCACTCGTCATCAGTGCGAGCGAAGCGGATAC 164784 28 100.0 32 ............................ TCCATGGTACATTCACGGCCGCTATACAGTCC 164724 28 100.0 32 ............................ ACTTTGAGGCCGACAAAGCCGACAATCATTGC 164664 28 100.0 32 ............................ AGAGCGAGGACGACCAACAATTGCATAAATCA 164604 28 100.0 32 ............................ TTTGATTCTAGCCATAGCTCTAGCGTACTTGA 164544 28 100.0 32 ............................ TACTTGGCCTGATTGTCTTGATAAGCCGCATC 164484 28 100.0 32 ............................ TACAAGGCAATGGCAAAGATAATGTTGTTCCT 164424 28 100.0 32 ............................ AGTGAAATGAACTGTTTTAGCTTCAAGACCAA 164364 28 100.0 32 ............................ GCGGCGATAAGCTGCCTCGTTAATATGAGGTA 164304 28 100.0 32 ............................ GTCAGGACAGCCACGACCAAGGGCTTTGATAT 164244 28 100.0 32 ............................ TCGTTGAAGAAATGGCTCGTGATGCATGCCCA 164184 28 100.0 32 ............................ TTCCCGTACTTCTTAAACACTTTTTCGATCTG 164124 28 100.0 32 ............................ TTGGAAGCCGACAAAAGGCGATTCAATCAGCG 164064 28 100.0 32 ............................ GTTTTCTGTAATGCGTTTATGAGGAACCATTG 164004 28 100.0 32 ............................ TTAATCCCAGTTTGCTGCGAGTACCAAGACGC 163944 28 100.0 32 ............................ GTTAATTGTGTGCTCGTCGGCGAATTCAAGGC 163884 28 100.0 32 ............................ AGCGCGGTTGGCCTGGTGATTCATTTTATGAT 163824 28 100.0 33 ............................ ACACAGCGGCCAGCTTGCTTGTCCAGAACAAAA 163763 28 100.0 32 ............................ TAACTCGACAAAGCAGCTGGTCGTTAAGTCAT 163703 28 100.0 33 ............................ GCTAACAGCTTTTACCCAAGTTGAAGGCGGCAT 163642 28 100.0 32 ............................ AATCGCCGACCGCAGAGCAGCGCGCACTAGGC 163582 28 100.0 32 ............................ TACAACGAAGCAATTTTCGGTTAATAAGGGAA 163522 28 100.0 32 ............................ GTTCAAGAGGCCAGTGAATGGCTTTACAAAAA 163462 28 100.0 32 ............................ ATGAAAACGTCGGGTGTAGCGATGCCCGTTTC 163402 28 100.0 32 ............................ TTGATCATCCTTGCAGACGTAAGTGCCGTCGT 163342 28 100.0 32 ............................ GTAACAATGGAGAGAACATTAGTTTTAATGAT 163282 28 100.0 32 ............................ AGCCCGTGAAAACTGTACCGACTAAGCCAGTA 163222 28 100.0 32 ............................ TGCAGGTTTGCCGGAATGGTCACGACCATGGC 163162 28 100.0 32 ............................ TGACTTGCGCTGGCGAAAGAGTGAATCCCTGC 163102 28 100.0 32 ............................ ATTCTATCGAGTAACAAATCTAACTCACTAAC 163042 28 100.0 32 ............................ TTGCCGCGAACCTACGCCCTGACATCATCATC 162982 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 162922 28 100.0 32 ............................ ATCCGTGACGGCCTTTTTCACGATGTTCTCCT 162862 28 100.0 32 ............................ GATCTCGATGTGAATCAATCAACCAGCTTTAC 162802 28 100.0 32 ............................ GAGAGCGCAGCGAGAGCAATCGACAATGCGAT 162742 28 96.4 32 ...........T................ ATAAAACGTGTCACCAAACTCATTCATCTGCT 162682 28 96.4 32 ...........T................ TATAAGATGAATCCGATAAACAAGCCGCAAGC 162622 28 96.4 32 ...........T................ AGCCTTACCTTGCACAACTAAGGTATCAATTG 162562 28 96.4 32 ...........T................ AATTGTCACGCAATACGCGGGCAACGAGAAAA 162502 28 100.0 32 ............................ TTGATGCGTTGTTCCCGCCTTTGTGTGCTGGG 162442 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAAGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //