Array 1 233170-231674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLX01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 228 NODE_3_length_444439_cov_15.6506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233169 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 233108 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 233047 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 232986 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 232925 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 232864 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 232803 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 232741 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 232680 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 232619 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 232558 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 232497 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 232436 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 232375 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 232314 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 232253 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 232192 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 232131 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 232070 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 232009 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 231948 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 231887 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 231826 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 231765 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 231703 29 86.2 0 TAA.........T................ | A [231676] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249883-249306 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLX01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 228 NODE_3_length_444439_cov_15.6506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249882 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 249821 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 249760 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 249699 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 249638 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 249577 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 249516 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 249455 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 249394 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 249333 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //