Array 1 99297-99084 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAB01000012.1 Salmonella enterica subsp. enterica serovar Reading strain BCW_2763 NODE_12_length_99342_cov_5.26775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99296 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 99235 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 99174 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 99113 29 96.6 0 ............T................ | A [99086] ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCAT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAB01000105.1 Salmonella enterica subsp. enterica serovar Reading strain BCW_2763 NODE_105_length_541_cov_2.37021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 43 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 145 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 206 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 267 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 328 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 389 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 450 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 511 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================= ================== 8 29 100.0 38 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGATTTAAACCACATTGAAACGGCTATTTACTGGCG # Right flank : GA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20594-21842 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAB01000064.1 Salmonella enterica subsp. enterica serovar Reading strain BCW_2763 NODE_64_length_21868_cov_4.49135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20594 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 20655 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 20716 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 20777 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 20838 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 20899 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 20960 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 21021 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 21082 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 21143 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 21204 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 21265 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 21326 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 21387 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 21448 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 21509 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 21570 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 21631 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 21692 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 21753 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 21814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : CACCCCATCATCTTCCGCAATCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-436 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAB01000065.1 Salmonella enterica subsp. enterica serovar Reading strain BCW_2763 NODE_65_length_18097_cov_4.53983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 104 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 165 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 226 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 287 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 348 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 409 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGATCCTGATTTGTAGTAAGTCTGGTCGGAGGAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16698-18070 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAB01000065.1 Salmonella enterica subsp. enterica serovar Reading strain BCW_2763 NODE_65_length_18097_cov_4.53983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16698 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 16759 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 16820 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 16881 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 16942 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 17003 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 17064 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 17125 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 17186 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 17247 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 17308 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 17369 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 17430 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 17491 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 17553 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 17614 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 17675 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 17737 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 17798 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 17859 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 17920 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 17981 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 18042 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ATCCTGATTTGTAGTAAGTCTGGTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //