Array 1 95994-94929 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMP01000012.1 Escherichia coli strain SC369 NODE_1_length_380937_cov_83.99_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95993 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95932 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95871 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95810 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95749 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95688 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95627 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95566 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95505 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95444 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95383 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95322 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95261 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95201 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95140 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95079 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95018 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94957 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113049-111495 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMP01000012.1 Escherichia coli strain SC369 NODE_1_length_380937_cov_83.99_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113048 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112987 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112926 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112865 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112804 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112743 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112682 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112621 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112560 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112499 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112438 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112377 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112316 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112255 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112194 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112133 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112072 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112011 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111950 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111889 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111828 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111767 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111706 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111645 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111584 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111523 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //