Array 1 957423-959402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062225.1 Salmonella enterica subsp. enterica serovar Goldcoast strain R18.1074 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957423 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 957484 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 957545 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 957606 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 957667 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 957728 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 957789 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 957850 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 957911 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 957972 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 958033 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 958094 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 958155 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 958216 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 958277 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 958338 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 958399 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 958460 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 958521 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 958582 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 958643 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 958704 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 958765 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 958826 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 958887 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 958948 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 959009 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 959070 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 959131 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 959192 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 959253 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 959314 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 959375 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 975975-977834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062225.1 Salmonella enterica subsp. enterica serovar Goldcoast strain R18.1074 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 975975 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 976036 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 976097 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 976158 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 976219 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 976280 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 976341 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 976402 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 976463 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 976524 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 976585 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 976646 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 976707 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 976768 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 976829 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 976890 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 976951 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 977012 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 977073 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 977134 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 977195 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 977256 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 977317 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 977378 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 977439 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 977500 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 977561 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 977622 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 977683 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 977744 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 977805 29 96.6 0 ............T................ | A [977832] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //