Array 1 174167-171627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBP010000010.1 Streptococcus uberis strain GCPRG108 Contig_10_202.818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 174166 36 100.0 30 .................................... GTTTGACCTGTTAAGGCGCTCCGGTCGGTA 174100 36 100.0 30 .................................... ATATAGCATCTTTAACAAATTGCTTAGGTC 174034 36 100.0 30 .................................... CTATCTATCTCTAAGACCTATGCAAGAAAT 173968 36 100.0 29 .................................... TTTTTCCAAACACTTTGTGTGTACTACAC 173903 36 100.0 30 .................................... ATATTTGAATTCATCTGTGATACGTGCTTG 173837 36 100.0 30 .................................... CTTATATCGTGCATGATGATTTTGCTTTCC 173771 36 100.0 29 .................................... TTCCAGTAAAAAGTAATTTTAAAGCACTT 173706 36 100.0 30 .................................... TACCTTTTTCATCACGAGAAACAGTGAATG 173640 36 100.0 30 .................................... ACATTTTTAGACCCTGCACTTGCTGAAACA 173574 36 100.0 30 .................................... TAGGTCTATCGCCGTCCGTTATCAGTAACA 173508 36 100.0 30 .................................... CGACTGTGACAGCATCAGGACCATTTACAA 173442 36 100.0 30 .................................... AGAGAGCGACAAAGAGACCAAGATGTTATA 173376 36 100.0 30 .................................... AGTACCGCGAATATTTAGAACTACAAGCTA 173310 36 100.0 30 .................................... AATTCCTCTAACTCTTTTATAAGAGTATCT 173244 36 100.0 30 .................................... CAGTGTAGACTTGAACAACTTTAACACCTC 173178 36 100.0 30 .................................... ATAATGTAATGACATTGATAGATGCGTTTG 173112 36 100.0 30 .................................... TTATATCAAAAATAAGCGCAATGATGTGCC 173046 36 100.0 29 .................................... TGATGCAAGCGCAACTAAAGCCATCGCAG 172981 36 100.0 30 .................................... AGACTATTCAGAAACAAGATTTACTTTGTA 172915 36 100.0 30 .................................... AGACTATTCAGAAACAAGATTTACTTTGTA 172849 36 100.0 30 .................................... TAACTCCGACAGTTTAAGAGGTGTTGAATG 172783 36 100.0 30 .................................... AACAGCGACAACAACAACGACAACTGTTAA 172717 36 100.0 30 .................................... TAATGATAATTATGGTTGGTTGTCTGATGT 172651 36 100.0 30 .................................... AACCTGAAACAAAATCTAATACATTAAAAG 172585 36 100.0 29 .................................... TAAGTGACATACCACCCCCAACACCTTGA 172520 36 100.0 30 .................................... GAACGCCTGCTATATCTGCTTATGGAGTGA 172454 36 100.0 30 .................................... TATATTACTGTGACGATGCAGAACGCATCT 172388 36 100.0 30 .................................... CTGTCTTTGAAAATTATCGTAAAGATGTTT 172322 36 100.0 30 .................................... GTATCTATAATGCTTATTACAATCCATAAT 172256 36 100.0 30 .................................... TAATAAACCCTGAAATAAAATCAAGCACGT 172190 36 100.0 30 .................................... TCATTGGTCAACCGCTGATTCTCATCTGTT 172124 36 100.0 30 .................................... ATCACTTCCGACATAAGCCTCGATAGTGAT 172058 36 100.0 30 .................................... TTACCTCTTTTCTTGCTAAAATGGGTATAA 171992 36 100.0 30 .................................... GCATTACTTACGTGATAGCAACGACAAGCA 171926 36 100.0 30 .................................... TTGATGGATTATGGTTATTATATCCAGCGT 171860 36 97.2 30 ........G........................... GTGGAGCTTACGGTTCAACTATACAAGCTT 171794 36 100.0 30 .................................... TCATTTTTATTCTCCGATTTCTAATTCTCC 171728 36 100.0 30 .................................... TCATCTATATTCCTCTACTTGATTCACTAA 171662 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGATATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGCTTGTCTATAAGAGATATGGTAACTATCAAAATATTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAAATAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : GGCAAATAATTCCATATAACACAAAGAAAACAGACACTTTCTAGAGTGTCTGTTTTTGCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGTTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGCCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //