Array 1 244943-244033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009528.1 Methanosarcina barkeri MS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 244942 37 91.9 36 .............AG....C................. CAGATTTAGCAACGACCATATTTTGTTCTCAATCGC 244869 37 91.9 36 .............AG....C................. GCCAGATTCTTGTAAGCATCTGAAAGATTATTAAAA 244796 37 100.0 36 ..................................... TTTGAGGAGATATATCTACCAGAGCCCATGTCTCTG 244723 37 94.6 36 ...........A........T................ ACTTATTTCTTTTCCTTTTCCGTCATATATTTTTAT 244650 37 97.3 38 ...........A......................... ATTAGAGTTGCCTCCTTCAATCTTTGGTCAGATTTAGG 244575 37 100.0 36 ..................................... TATTCTTTGCTTTCTTGAACCGAAGACTGTATTCCA 244502 37 97.3 35 ...........A......................... AATTTCAGACTTTGTCGGTTGGTTTTCGAGTTTCT 244430 37 97.3 35 ...........A......................... CTTTTCTCTTCCCAAACTTGTCTGCTATTTTTTAG 244358 37 100.0 36 ..................................... TAGTTTTCATCAAATTTCTCCTCTTTATTTCTAAGC 244285 37 100.0 36 ..................................... TATTATATCTCTAATACAATCATTCATATTTTCTAT 244212 37 94.6 36 A.................T.................. CCGTACTCTGATACCATATTAAGTCATCCCTGAAAT 244139 37 100.0 35 ..................................... TCTTTTCCAAAGAAAAGATCATTTACCCGTCTAGT 244067 35 86.5 0 ...A.T.............-....-..........C. | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 96.3 36 GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Left flank : TAAAAACCGAATTCTGGAAATTGTACTTCCGTTTTCCTGAAGAATCACGCTTTTACTCAATTTGAGTTTTTAGTTTTCAAAAAAGCAATATCAATAAGTAACATTTAAAATAACTAGCTTGAAGTATTTTAAAAGAACACCTTCTTTTTTCTTTTGACCAAAGATATGAAATTCACAATTGTGTGAGACTGTCATCATTTAACTAAAAGTTAAAATGTATCTTTCATATTCAACTTCGTAAATTATTTTTTAAAAGTGATTACATATGTACATTATCAAATAAATAATTTTGATATCCTATAAGCGAAAATGCAAAAATTTAAATGGTACCCGTCCTTATATACCCTTTAGCTATTTGTCGACGACCAAATTTAGTTAACCAAAACAAAAACAAGTATATTTCAAATATTAGACAGTTCAAACAAAAAAGAAGTTTCTTGATGTTTGTTTTTAGGTTCTAAATTTCCAGAGAATTTGTTGAAAATCAGGAAAACGGTCCT # Right flank : TTTCTCTATGGATATCTGTCTCTGTTTTTATTGAAAAACAGTTCCAAGAAAACACGTATCAAGACCTCTAATTCGGAAAAAAGCCGAATTCTTCGCAGCTAAATATATCAAGCTCCGTAGATGATTGAAAATTAAGAATCATTTACGGAGGTATCTGAGATTCAGAAGCAAAAACTGGCCGAAATTCAATTAAAACTGTATAATAAAGCGAAAAGGAATCCTGAAAAGCGGTTTAAAAAACTTAAAAAGCTAATTTTGAAAGACGAAGTTCTTTACACCGCTTGGAAGAATTTGAACAGAAATACAAAAGGAACTGGTTTTGATTCTCTGACTATCCAGCAGGTAGAGGCTTCAGGGGTTGAAAACTTCATCCGCTCGATAAAGAAAGAACTTAAAAGTGAAAAGTACGCTGCTGGCGAAGTGAAAAGAGTCGAAATTCCAAAAAAGAACGGTGAGACAAGGCAGCTTGGAATTCTTACCTTAAAAGACCGGCTTGTCCA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Alternate repeat : GTCGAGAAGTAAACTCCACGAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 255528-247985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009528.1 Methanosarcina barkeri MS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================== ================== 255527 37 100.0 36 ..................................... ATAGTGGATACTGTTCTTCTTCAGGAACATACTCAA 255454 37 100.0 34 ..................................... GTATATAAATAGCTTAGTTTCCACTGGAAAACGA 255383 37 100.0 38 ..................................... ACACCTATTCAAATATGATTTCTAGGTCTAATAAGCCG 255308 37 100.0 36 ..................................... CAGCAACCCCGCGAGGATTTGTGCCAACTGTTACAG 255235 37 100.0 35 ..................................... AAAATCGATGGTGCAATATTCAACCCCAATTTAAC 255163 37 100.0 33 ..................................... AAAAAATAGTATCGGGTGCTACAAAATCCAAAA 255093 37 100.0 34 ..................................... TTTCTGATATGATTCTAGGAGACTCTGACGATAT 255022 37 100.0 37 ..................................... TTTCTGCTTTTAAAATTGATACTTTTGAAGATAGGGT 254948 37 100.0 37 ..................................... AGTGTAGTATTTGCAGCCTATTGTAATACACAGATAT 254874 37 100.0 37 ..................................... GAAATAATTGATAATGCTGGACCAGCAGCTTCTCCGA 254800 37 100.0 37 ..................................... AAAATTGTGGATACAATTTGAATGAATTTAAAGAGGT 254726 37 100.0 36 ..................................... TCAATACGTTCAAGAAGTTTGACTCTTTTACCTCTT 254653 37 100.0 36 ..................................... ACAGAGAACCGGGGACGGTTGGAGACATTCAAAAAT 254580 37 100.0 34 ..................................... TCCACTCTTTTCCACCTTTACAAAATCCAGTATC 254509 37 100.0 34 ..................................... CTACAGGGTTCGGAGGGAAAATAACCTCTGAACA 254438 37 100.0 41 ..................................... CAACGATGAAACAACCCCTTTGAATGAAGGAACTGCAAGAA 254360 37 100.0 37 ..................................... TTGTGATCGTTTCGTATTCGTCATTTGACATATCAAC 254286 37 100.0 37 ..................................... CAGATAACCACTCTTCGGGAATTGTTAGTGGCTCCCA 254212 37 100.0 39 ..................................... TTAGAATAGCAGTGGACAAAGAATTCATACTTTCCATCT 254136 37 100.0 37 ..................................... TTTTTAAAGTTGGATAATGTTGTGAATATGCACTCAT 254062 37 100.0 34 ..................................... AAACAACTACTAATGAGATATTGTGCTCTTTTAT 253991 37 100.0 35 ..................................... ATCATTGACTCTGATAGCTCAGCTAATGCCAGCGG 253919 37 100.0 37 ..................................... TCTTGGATTCAGGGGCTATTATACACCCAATGGGGAA 253845 37 100.0 37 ..................................... CACTCGAAACTTTTGATCATACCTGGACTAATTCAGA 253771 37 100.0 37 ..................................... CACTCGAAACTTTTGATCATACCTGGACTAATTCAGA 253697 37 100.0 37 ..................................... AATGAATACACGCTGTTTCCATACGGTCGTTCGCGTC 253623 37 100.0 35 ..................................... GTTTTTGACGGTCTGCCTTTCAATTTTTTAGTTTC 253551 37 100.0 36 ..................................... ATTCCCCTCTTTGATACAAAACACATTATAAACACA 253478 37 100.0 34 ..................................... CCTTCCACTTTGATATCCCGCTCAAACCCTTTGC 253407 37 100.0 37 ..................................... CAAGAACGGAGAAAGGATATACAATCCAATTGACTGT 253333 37 100.0 38 ..................................... AGACTTCTTGCAGCTTGAACAGCTCTACTGTCTCGAGC 253258 37 100.0 35 ..................................... GAGCTCAGGATGTTTGATCTTTCTTAATTTTTTGG 253186 37 100.0 37 ..................................... TAATACATATTGGTGAGGAACCCGGTAACGCTTTCGG 253112 37 100.0 39 ..................................... CCTCAACATCATCATTCATTCAAAACGCCCTCCTTTATT 253036 37 100.0 36 ..................................... ATATATGCGATTCCTGAAAAGGCCTTCCTTCTTATC 252963 37 100.0 37 ..................................... AACACTACCGGCACCGAGGGTAAATGATCTAATGACA 252889 37 100.0 36 ..................................... TATCTGCCTATATGTTTCTCATAGTTTTTTTGCGTT 252816 37 100.0 37 ..................................... TAATCTTCTGCTATCCAGAAGCCGGTTTTCCTGAAAG 252742 37 100.0 37 ..................................... AACACTACCGGCACCGAGGGTAAATGATCTAATGACA 252668 37 100.0 36 ..................................... TATCTGCCTATATGTTTCTCATAGTTTTTTTGCGTT 252595 37 100.0 37 ..................................... TAATCTTCTGCTATCCAGAAGCCGGTTTTCCTGAAAG 252521 37 100.0 35 ..................................... TTCTGCAACACACCCCACCGGACCTATAAGAGCTT 252449 37 100.0 34 ..................................... TCCAGTTCCTGTCTAAATTGGTACACTGTTTTAA 252378 37 100.0 35 ..................................... ATCAACTAAGGTCACTTTTGACCTACTGCAAATAA 252306 37 100.0 37 ..................................... GCAATTTGTGAGGAAGAATAAATGAACTATCACGCGC 252232 37 100.0 35 ..................................... ATTGCTTCGTCCTTAGCTAAATTATAAAGAGCGGT 252160 37 100.0 36 ..................................... ACAGTCCAACGACTGAAGAGCCGGGTAATTCTTGGA 252087 37 100.0 37 ..................................... TTAAACAGATCTGTAGCCTCTATCTGATCAGATTCGT 252013 37 100.0 35 ..................................... TTAGATATGAAAGGCACTTTTCTATCCTGACAAAA 251941 37 100.0 44 ..................................... CCACCATACGCCGGACTTGCGATTTTGAATAATCAATACTCTCT 251860 37 100.0 35 ..................................... TTCAGCTCGCATTCGTCCTCATCAACCTAACCGGA 251788 37 100.0 40 ..................................... ACATCAGAACAGCAAGCAGACATCAATAAAATGCCTGAGT 251711 37 100.0 36 ..................................... GGAGCTTCTGAGCTCTACGGTAGCAGTATTATTTAG 251638 37 100.0 35 ..................................... ATGACTATTTGTTATTTGACATATCAACTACCTAT 251566 37 100.0 35 ..................................... CAGACTCGGATTCAACTTTTATTTGCTTTCCAGAG 251494 37 100.0 38 ..................................... GTTCTTTGCGGGATAATAAATCACTTTGGTTCGCCCAA 251419 37 100.0 37 ..................................... AATATTACAATCCTAATTTCTGAAGTCCTGTACTTTC 251345 37 100.0 38 ..................................... TCATATTGTTTAAGTTGCTCAAAAAAATCCTCTGTATT 251270 37 100.0 36 ..................................... TTGTGAATGGGATAGAAACAATCTGGTGATGTTATG 251197 37 100.0 39 ..................................... TCAAAGAATCATGGCTCGTTCTAGAGACCTTGTTTTCAT 251121 37 100.0 41 ..................................... CTTCGGGGAAGTGTCTGGTGATGACAATGAAATTTCAGAGT 251043 37 100.0 36 ..................................... AGTCTGATTCTTCCCAGGGATTAGTTTCATTATTCG 250970 37 100.0 39 ..................................... TTACACCATTTCATGGCAATCTGTGTTCGAGCAGTGATT 250894 37 100.0 34 ..................................... TAATAGATGACGGTTCTAAAAATGATGAACAAAT 250823 37 100.0 33 ..................................... TCATTATTCGAGATGAACGGAAGAGGGAGTAAT 250753 37 100.0 33 ..................................... ATTCAACAGGAAAACTTAGGTTGAAATGGTGAT 250683 37 100.0 34 ..................................... GGACCCTGGAGAATTCCCGGAGAGCTGCAGGAGC 250612 37 100.0 34 ..................................... TCTTTTGTGAGTGTGATTACGTATTTTTTGCCTT 250541 37 100.0 35 ..................................... GACTACAGGGATGTATAAGATTTGACCCCGACGAA 250469 37 100.0 34 ..................................... GAATACTCATGCTCTCACCGTCCTCAAGAAACAA 250398 37 100.0 36 ..................................... ATTAGGTAAGCTTTTTCGGTTTCGGCTTCTATTGAT 250325 37 100.0 34 ..................................... CATAAACAATAAATATATGATTTCTTACTATTAC 250254 37 100.0 36 ..................................... CATGCTGCCCTGGAGTAAGCAACGCAAAGAGGACAT 250181 37 100.0 35 ..................................... TAAAAATGCTATTAGAACCAGAACAGAAACAAAAA 250109 37 100.0 33 ..................................... AAAAGAGAGATTATGCAATATCATGTATGACCT 250039 37 100.0 35 ..................................... GACTACAGGGATGTATAAGATTTGACCCCGACGAA 249967 37 100.0 35 ..................................... CTAGTCTAGATATCAAAGGTGTGACTATCTCAGGG 249895 37 100.0 36 ..................................... GAAAACCACTGATCTGCATCCCAAAATGATCCAAAA 249822 37 100.0 37 ..................................... TATAAAATAAAATAAGAAAGGAACTTTCAAATGACAT 249748 37 100.0 37 ..................................... TATACCCGTCTTCTCCAAGAAGTGAACGCTTATAGAA 249674 37 100.0 37 ..................................... ATCATCTCCTCTGTTGTTAAGTCGCTTATTAACATAT 249600 37 100.0 38 ..................................... ATTGGTGTTTTTTTACATATTTGTGACATTTTCCATAC 249525 37 100.0 36 ..................................... GGAAGGTCAACCATGTTTTCGACTTCATTATCAATT 249452 37 100.0 36 ..................................... AAGATAATGTATATTCCATCCGTTGTTCTGGTTCAT 249379 37 100.0 35 ..................................... ATAATTGGATGATTGAAAGGAGATTAAAACAATGA 249307 37 100.0 33 ..................................... CTCATTTTCTCATATCTCCTATTTCATCTTATT 249237 37 100.0 39 ..................................... TGGTTTAGGTCTATACATCCCCAATATGTCAGTTCATTT 249161 37 100.0 36 ..................................... TAACAAACTCCTGACAGATGAAACAAAAAAGCTTGA 249088 37 100.0 35 ..................................... AACTTCCTTGTCTCTGATTCCATGCTTTCTATCTG 249016 37 100.0 39 ..................................... TTTTTAACAACCGAGAAATGGGTCGGAGAGAAAAAAGAG 248940 37 100.0 35 ..................................... AAGGTTGCCTTCATATATTCACCTTGTCCAAAAAT 248868 37 100.0 36 ..................................... ATTGCTGTAGTAAGCGTTCTGGGGGATAGGAATTTC 248795 37 100.0 34 ..................................... TTCCCACCTTTTCACATTCAACACACTTTCCAAT 248724 37 100.0 37 ..................................... AGTGTAGTATTTGCAGCCTATTGTAATACACAGATAT 248650 37 100.0 37 ..................................... GAAATAATTGATAATGCTGGACCAGCAGCTTCTCCGA 248576 37 100.0 37 ..................................... AAAATTGTGGATACAATTTGAATGAATTTAAAGAGGT 248502 37 100.0 36 ..................................... TCAATACGTTCAAGAAGTTTGACTCTTTTACCTCTT 248429 37 100.0 36 ..................................... ACAGAGAACCGGGGACGGTTGGAGACATTCAAAAAT 248356 37 100.0 34 ..................................... TTCTCGTCAAGAAAGAACTCCCATGACTTGAGGG 248285 37 100.0 36 ..................................... GGAACTATATGGACTACATTGTCACCGTCTAGATAT 248212 37 100.0 38 ..................................... ACAGGGCGTCCTCTTGGAAAGCTCATGATAGGTCACGT 248137 37 97.3 75 ..................T.................. ATACAGCTTTTGGGCATACATTCTCAGAAAACTCGATTCGTGAGCAATGCTTTTTAAGTAAGTTGTGTATATACT 248025 37 91.9 0 .....C............A.....A............ | AAA,G [247994,247999] ========== ====== ====== ====== ===================================== =========================================================================== ================== 103 37 99.9 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ACCTACCAGTAGTGTTTTCAGTAATCTCAGATCAATTAAATAACACGATATAGAGAAAATATAACAATATAGTAATATTTTTTTGATAAAAATTAAGATGAATTAGACTACACTCGTTTTGTTATAAATACATTCCTAAATATATGTGATACAAATATGTTAATTTTATAAAATTAAATAATACAAAATATTATTTTTATTCGTTTGTTAGTTTTGGATTGAATTCAGTATCTGGATGAAGAAAAATAGTTTAAACTTGGTGTTTTTAAAAAATAACAAAAACATTATTGAATTAGGCCGGCTTTTGAATTTATTTAAGACGACTTAAAATACAAAAGTTAAATAGAAAGAAAGGCATATACCAGAATGTTTCCAAACTGCTAGAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTCAACCCCAAAAAAGGACTCATTTCAGGCCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTATATTTTTGCGAAGTATATCAGGCGATGAAAATGCTAGATTTCCTTAAAAATTTATTTGGTAGTAAAAATAATAATAAAACCCAAATAAGTAAGCCAAAATATGTTAAGGCGTTTGGAGATAGAGTTATACACTGTAACATGGCTCGCATATTTACCGGAAAAGTAACAAGTGTAGGTAACTGGGGTAATGATTACGAGAGAAATTATAGGTATAATGTAATATCGGGTAAAGTTAAAATTAGAAAGTTAAAAGCTATAACATTACATAGGAGCTGGGGTGGCACAATTAAGTTTTTTATGTTTTATCCTGTTACTGGATATGCAGAAATAGAAGCCAACGGTACAAGAATTATGTTACACAAATATAATGGATACGGAAAAAAGATGATTTATAAGCAGAAATTAAGATTATGATTTTTACTTTTACTAAGTAAGACACTTTTATAGTAATAGTTATCAGTTTGTGAATATATCTATTTTCAATATAAAATTCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 978492-976998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009528.1 Methanosarcina barkeri MS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 978491 29 100.0 32 ............................. GTTCAAGGGACCTTCTGGACATGTCTAGAATT 978430 29 100.0 32 ............................. GTCCCTAACAACGGCCTCACTAGTGTACATAA 978369 29 100.0 32 ............................. ATGCCTCTTGTGTATATTCCCTGATTGATGTT 978308 29 100.0 32 ............................. TAATAATAGAGTGCAAACTATTTAAAGATGTC 978247 29 100.0 32 ............................. GTTCTATCAGACAAAGACAATAAAGAACTTGG 978186 29 100.0 32 ............................. TTCATAACAATCTCCGTTTTTTATCACTAGGT 978125 29 100.0 32 ............................. GCGGCAAACGAAGGGTCATGGCAGGCATCCGC 978064 29 100.0 32 ............................. TTTTACAGTCAGTTGGTGCGGTTAATTCATAT 978003 29 100.0 32 ............................. CTGACGGGAGTGTAGGTGAAGAAACTGCTCTG 977942 29 100.0 32 ............................. AGATTGAACAGGATGGAAAATGTTATTGTGAG 977881 29 100.0 32 ............................. TTCCCCATCTCCTCTGCACTGGCATGCCGCTG 977820 29 100.0 32 ............................. TTGTACCGCAATATCATAACGGGAACTAGAAA 977759 29 100.0 32 ............................. AGTCACGGACAAATTACGTGATTGGTCTTGAT 977698 29 100.0 32 ............................. TTGCATTAGAAGTAATCAAAATCTGTAATGAC 977637 29 100.0 32 ............................. CCACAATGAAAATGTCATTATGCACCCTCCTC 977576 29 100.0 32 ............................. CATCGTTTTACCAGTACCAAACGTGCCATAGA 977515 29 100.0 32 ............................. CCCCGCTTGTCAACCCGTCGACATATGCATAA 977454 29 100.0 33 ............................. TTGGGAAGGAGAATCCACAAAGAACACTGAAAC 977392 29 100.0 32 ............................. AGATATGGAGAAGTAGTGTTTGAGACTAGGAT 977331 29 100.0 32 ............................. CTTAACGTCTCTATGAATCCTAGTCTCAAACA 977270 29 100.0 32 ............................. GATTCTGTGATTATTCGTATTATCCGCGATAC 977209 29 100.0 32 ............................. TTTTCCCTCTGGCATTTGATTTCCTATAGCTG 977148 29 100.0 32 ............................. GAATTTTGTGGGAAATGGAAAGGATATGAGAA 977087 29 100.0 32 ............................. GATGCATACCTATCGAAATGAGAACCGATTCT 977026 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GAGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TGCAGGTGCTCTTCCTATTCCTGAAAAGCCTCCGGAATCCATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAAGACAACGCCTCGGCTAAGAGGAAGACTGACGCTCTGGCTTCTGGAAATTAGGGCTGGAGTATATGTAGGAGAGTATTCGGTCAAGGTAAGGGACATGATATGGAAGAATGTAGAAACCGAATTCAATGATGGAAATATTGAAGGAAGCGCCATTATGATCTGGTCCGCAAGAAATGAAATAGGATTCGATTTCAAAGTTCTCGGCGAAAACCGCAGAATTCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATGCCCGAAACTAAAGTAGAAGAGTAAATTAACCGGAGATATTATGTTTTTGAAATATTTTATTTTTTATATAAAATACATTATAAAAAACGTTGTATATAGTAGCGGAAAAGTTTTTCCGACAAATAGTATAAAAGACAAACA # Right flank : TTAATGTAAGATGAGTCGCGCGGATTAAGGGAGAGTTCCCCACACATTTACTGTGATCTCACTTTAATAGGTGTTAGTACTATTGGTTTTCCTCTCAATGTCTTAACATAATATTAATAATTAAATGCAGTAGTTATTATCAAAATACTGTATTTTTCATATTATCTCAAGGGACATTCACCAATACAAATTTTAGTCAAACAATAATAAAGTATTTTTATGAAAAACAACTGTATAATAATAAATGAAAGAAAAGTATCCGGTTTCAGGATTTACAAGGGACAAAGAAGCCATTTATGTAAATGGAATCCGTATCTTTGTTCCTGTAGAATATGATAAGTTTAAGGCAGGAATTCCAAAAAAGAGACATAAAACTCTTTTTGAGCTATCAACAATCACTGGCATGAGGTATGCTGAAATTCAAAGGCTATACGATCATCCTGAATGGTACTCTGAGAGCAGGAACCAAATTCGTCTTAATGAAGATGCACAGAAGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3477648-3468845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009528.1 Methanosarcina barkeri MS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3477647 37 100.0 35 ..................................... CAAATTTCCCACTTGAAATCGCTCTACTAAATGAG 3477575 37 100.0 36 ..................................... ATAAAGGCTCTTATAGACTCTGGTAAAGACCACTTA 3477502 37 100.0 36 ..................................... CCTGATTCGTAGGCATTACTGCCTGTATGATTTATT 3477429 37 100.0 37 ..................................... AAATCTATTGGAGGCATATTAAGCCTCCGTTCCTGCT 3477355 37 100.0 38 ..................................... TGGTTTTACATAGGTTTTCTTGGAATGTCATTTACTGT 3477280 37 100.0 36 ..................................... CCGACATCGGCCATAGATACGCCTAACTGTTCCGCG 3477207 37 100.0 33 ..................................... ATATTGTCGTTTTTAAGTCCGCATGGCGTATAA 3477137 37 100.0 36 ..................................... TTATAAAGGGGTCTCTAACTCCGGAGTATGTGTTAC 3477064 37 100.0 33 ..................................... ATATTGAAGCTTAGAACGGGTAGAATAAAAAGA 3476994 37 100.0 36 ..................................... AAAATGTTCCACCCATCATCAATACTTTGCCACCAG 3476921 37 100.0 35 ..................................... TTGTATGACTGGTGAGATGAGCAGAAAGAGTTATT 3476849 37 100.0 36 ..................................... TAATTCAGGTCGATTTTCCAGCTAGGGTTGACGCTT 3476776 37 100.0 36 ..................................... TTTCTCCGTCGTCTTCGGATGATATTGTATATGATA 3476703 37 100.0 35 ..................................... TTTATTTCCCAGAGTGAACCGCCTTTAGGGTCTGC 3476631 37 100.0 34 ..................................... ATCTAGTCATGGACCCAAAAAAAAGAGGGTTAGA 3476560 37 100.0 34 ..................................... TTCTATCGACATTTAAGCGACCAATACCTTTTTT 3476489 37 100.0 35 ..................................... AACTTTACAATATTCGTCAATCTTGTTTGTACAAG 3476417 37 100.0 36 ..................................... TACCACTTGTTAAACCCCACACAACTACTCTAGGAT 3476344 37 100.0 33 ..................................... ATTTCACCAGGATAATCCTGTCCTGCTATATAT 3476274 37 100.0 31 ..................................... ATTCTTCTTCATTAAGTCCTAAACTTTTCAT 3476205 37 100.0 36 ..................................... TCAATATCTGTACATGCATATTCAACTCCGTGTACA 3476132 37 100.0 37 ..................................... ATATGTTCAATCCACTCAGCATAACGATCTAAAAAAT 3476058 37 100.0 35 ..................................... TGATAATTCAACTGAAATTGTTCCAGCAGAGTCTG 3475986 37 100.0 43 ..................................... TAGATGGATCTGCAATCCATGATTCGGTATAACCTAATACAAA 3475906 37 100.0 34 ..................................... AGGATTGATATCTTAGAAGATAGATGCATTATTT 3475835 37 100.0 36 ..................................... ATGAGTTTTTCTTCATTCAAAGCTTTGTTGTCGACC 3475762 37 100.0 38 ..................................... ATCAAGCATATCCACCACTGAAAGGATTTAAAGTAACA 3475687 37 100.0 37 ..................................... ATCATTATCTTCGTTTTTTGATTTTAATAAAAATCCA 3475613 37 100.0 35 ..................................... TCTGTTAAAGATGTTCTTGATTTAGCAGTTGGTAG 3475541 37 100.0 35 ..................................... ATAACTAATAATGAATTTCCTGGTATAATCCAAAC 3475469 37 100.0 32 ..................................... CCATCACGTATACTCCATTGATTATTCCAGGT 3475400 37 100.0 33 ..................................... ACAATAAATGGATTGACTAATATAAGTGATTAT 3475330 37 100.0 36 ..................................... AATCACCTACTCGATACAATAATATTGTATTTTCGG 3475257 37 100.0 35 ..................................... ACGGTTTGTTGTAACAAACTGATCATTAGATCAAA 3475185 37 100.0 35 ..................................... TGGACCATCGTATTCGAGAGATATCCAGCATATTT 3475113 37 100.0 36 ..................................... ATATCTCTGATTGATGAAATGCGTTCTGAATTGAAA 3475040 37 100.0 36 ..................................... TTTCTCCACAAAAATATTAAAGTAAAATATACAACA 3474967 37 100.0 36 ..................................... TTCTGATTACGTATCATAGTCTGAAGATTCGCTACA 3474894 37 100.0 35 ..................................... TTCAATTAAAAATATAGTTGGTGGTGTAATTGATT 3474822 37 100.0 36 ..................................... CTCTAGGGGCGGCCTGTGCTGTGGACCCTGACTTTT 3474749 37 100.0 34 ..................................... GTGTTGTATTCTGCATTCATCGTTTTTGTGATGG 3474678 37 100.0 37 ..................................... AGCTGAAATTCGACAAAGAAACCCCACACATTGGCTC 3474604 37 100.0 37 ..................................... TGCACACCTCTTGTTAATTTCTGCAATAATTTTATCA 3474530 37 100.0 35 ..................................... TTATCATCATGATTTATCAATCATCAAACCAAGTT 3474458 37 100.0 34 ..................................... ATTCTCAGCCTAAACACTGTTTCCAGTTGGCCTG 3474387 37 100.0 36 ..................................... TTAGAAGTTGATGTGTCTGCCTCTATACTTGATAAT 3474314 37 100.0 35 ..................................... TTTGAATTTATCCACGTTACACCTCCGTTGTCTCT 3474242 37 100.0 38 ..................................... CGGCTTCATTTTCTCCCCCTTCAAACACACAATCAAAA 3474167 37 100.0 37 ..................................... ACATCTTACGATGTTCTTCGATTTGATTAATTTCAAG 3474093 37 100.0 38 ..................................... CCGCTTGACTAAAATCGGTATTTGCGAGCGTGCCTGTT 3474018 37 100.0 36 ..................................... ATATACCCCATCCCTGAACACTGGGGCCGCCTGAAG 3473944 37 100.0 36 ..................................... TCCATGAACAACCTATTTGAAACTTCCTGCATAGCA 3473871 37 100.0 35 ..................................... TCACTGGGTTTCTATATAGCAAAGGAATAAAGATC 3473799 37 100.0 36 ..................................... TTGTTCCTGAATACAATCCATTTTCGAATTGTGCCG 3473726 37 100.0 37 ..................................... AAAAATTGAAGCATTTTGAAGATGTTGTCGAAACTAT 3473652 37 100.0 38 ..................................... TAACACCCAATTGTCTCGCGACTCTAGATAGGGCAGAA 3473577 37 100.0 37 ..................................... GAAATGGACGGTGTAACAGTTACCAGAGATTCGATGG 3473503 37 100.0 37 ..................................... AATACTTATCTGGGTTGCCGCAAAAAAAAACGGTTTG 3473429 37 100.0 36 ..................................... TAAAAAAGACCCGTATAAAATTGTTTAAGTCTAACT 3473356 37 100.0 36 ..................................... AACAGTGTGGCAACCAGTAAAGCATATGGAAAAAAG 3473283 37 100.0 36 ..................................... TTAACACATCTATATTTTTCACTTCGACTTTAAAAA 3473210 37 100.0 36 ..................................... AGAGATCTTGGTTTTGATGGGCTAAGTTGGGGGATG 3473137 37 100.0 34 ..................................... ATTCTCCAAACAAATTTTAACTCACAATCCTCTG 3473065 37 100.0 37 ..................................... TTCCCCATTTTCGATGGTTATTAAGTCTCTCGATAGT 3472991 37 100.0 36 ..................................... ACATAGCCGGGAGGTAATCACCAAATTTCGTGAAAT 3472918 37 100.0 34 ..................................... TTCATCACACCAACGGCTTGCGTTCCAGTATCAA 3472847 37 100.0 37 ..................................... CCGTCGCAGGTTTTACTATCATTTTCCTCCTGCAGTT 3472773 37 100.0 38 ..................................... TAGAGCCTTGGGTATGCAGTAACGAGCATTGCCAGAAA 3472698 37 100.0 36 ..................................... TTAAACACGCCCGGTTGTTTTCAATTGATAAACGAA 3472625 37 100.0 35 ..................................... TCTTTGAATAGATCTGCAAGTCCACCAATCTGTTG 3472553 37 100.0 37 ..................................... ATAACCAATATTGAAACAAATACCAAAATAATAAACG 3472479 37 100.0 36 ..................................... ATATTACCTCCGAGTCTTCTTTGGTGCTATTGGGTA 3472406 37 100.0 38 ..................................... TGTGTCTTGAAGAAATTGCAGGCACGGTAAAACCTGGC 3472331 37 100.0 36 ..................................... CCAGGGAATACCTGTATGATTTTTTGGATTAACACA 3472258 37 100.0 35 ..................................... GTCACAGGAACTTTGCCGGTGCTCTGATTCTGTTT 3472186 37 100.0 35 ..................................... TAGTGTCGTGACCGGTACGCTTCCCTTTGATATCA 3472114 37 100.0 33 ..................................... ATAAAACCGGACTGCTCAAAAGTACTGGTAAAG 3472043 37 100.0 42 ..................................... TTGTGTTATCTCCGTGTAAATTCTCTTTCCGTGATACTTACA 3471964 37 100.0 34 ..................................... CTACAATATTACAACAAATAAATAAAAACAATAA 3471893 37 100.0 37 ..................................... TTCGTATAATAAGTTGAGGTCTCTCAAGTTTCATCGT 3471819 37 100.0 37 ..................................... CTGTCTGGATGGGACGTACTGGCTGAGAATTGGGAGA 3471745 37 100.0 38 ..................................... TTTGAGTTTTCTTGCCTTCTCTCATGGCTTTTAGAAGG 3471670 37 100.0 35 ..................................... CACCATTTCCTTTTCAATAATTTCAACTTCTCCGT 3471598 37 100.0 35 ..................................... TGTGGTCGTATATGTCTATAGCTTCTGTTCTTGAA 3471526 37 100.0 35 ..................................... AATGACTGCACAAGCTCCACAGATCCAAGAATCTT 3471454 37 100.0 35 ..................................... TTGACAGTTTCATGTTTTTTCTCCATTTTCATCAT 3471382 37 100.0 38 ..................................... TTCAGAATACCCTCATAACATCCATGTCCCTTTTGTTT 3471307 37 100.0 36 ..................................... ATGATGGTTTGTATTGTCCAGGTGTCGTCGGTGACG 3471234 37 100.0 38 ..................................... ATTATAGGTACTGTGAAATTAGGCGTGTACCTATCACA 3471159 37 100.0 39 ..................................... ACAAACTTTGTGATATTAATGCAAAGATTACTGAAAAAG 3471083 37 100.0 38 ..................................... AATAGCTGTACCTGTTTAGGGCCTGTTAAACGCTGCCT 3471008 37 100.0 36 ..................................... ATTTCATAGTGTTCCCTGCCTTCCTACATGGAAATT 3470934 37 100.0 36 ..................................... AATAAAATATATTCTTCTTCAGAGTATATTTTTGTT 3470861 37 100.0 36 ..................................... TTTTATTGTGTATTATATATTACGCATGATACATTA 3470788 37 100.0 37 ..................................... ATGATTACAGCGGATTTTGAGATCTCTTCTATAAAGA 3470714 37 100.0 38 ..................................... TGCATTTGATACATCACATTGGAGCGCAGGTGGACCAG 3470639 37 100.0 38 ..................................... AACGGTTCAGCCATGTAATTCAGCTCCAAAAATTAAAA 3470564 37 100.0 36 ..................................... ATAATGTCTCTCGAATCTGAATTAGATCATCTTATG 3470491 37 100.0 38 ..................................... AACGGTTCAGCCATGTAATTCAGCTCCAAAAATTAAAA 3470416 37 100.0 36 ..................................... ATAATGTCTCTCGAATCTGAATTAGATCATCTTATG 3470343 37 100.0 41 ..................................... ATTTCTGAATGTCTTCAGGAGTGCCCCAACAAGGCCGCTGT 3470265 37 100.0 34 ..................................... TGGTAGCGGAGCGTGGATATATCTATAAAAAGGT 3470194 37 100.0 36 ..................................... AGTGTTAATTGTTTCACGAAGTGCTCTTTTGCAAAA 3470121 37 100.0 35 ..................................... AAGATTAGATATACATTTGGATTTCCTGGGATTGC 3470049 37 100.0 38 ..................................... CACCCTCCCCTTAAAAATTTGATAGAATTTTATAAAAA 3469974 37 100.0 33 ..................................... ATCGGTGAGTACATCAATGATATTGTTTAACTG 3469903 37 100.0 36 ..................................... ACCAAAGTTCCAGAATGCGCCTTTTTTCATCTCCAG 3469830 37 100.0 33 ..................................... ATACATGACTGCAAATGTAACTACTGTTCAATT 3469760 37 100.0 35 ..................................... AAATAATGCGTATCGTAAGCCCGAGCGACCTTTTT 3469688 37 100.0 34 ..................................... AAATCAATATCAATCAATTGCATTATCACATATT 3469617 37 100.0 35 ..................................... CTAAGTAATGAATAAAACAAAAAAACGAAACTGAT 3469545 37 100.0 36 ..................................... GAGACCAGGATGCAGACTTTCCCAACACCGGCCCTA 3469472 37 100.0 36 ..................................... ATATTCTCTAAAGGGATGTCGATTCTACGTCTAGGC 3469399 37 100.0 34 ..................................... CTGACACTGTCACGGCTGCCCTATGGCAAGGCAG 3469328 37 100.0 38 ..................................... ATAGATCTTTATATTCAACGCAAAATTCTAGATTATGA 3469253 37 100.0 35 ..................................... TTATAATAAAGAACGTATGGGCACGAGTCTATTAT 3469181 37 100.0 36 ..................................... AATACTAATTTTTTCTGTCCGTTTGAGGCAGATACT 3469108 37 100.0 36 ..................................... CCTGAAGGAGTCAAACCGAAAGCTGTACCCTCTGAG 3469035 37 100.0 37 ..................................... AAAATTAGAGGAGTCTGTTTTATAATGAATATCAGAT 3468961 37 100.0 43 ..................................... ACCAAAATTACCAAATAACACAAAAAAGTAATCGGGCGACAAA 3468881 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 121 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGAGAGACGTATTCATTGCTTCAAAACAGCATCATATAAAGGGAATAGTAGATGAAGTACTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAATATAAATTTGCTGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAGCTGGTTTTGCAGGCTCTTTTGATCCGGGAAAACTATAATATTGAAGTAAACCGTGCTTATATCTGTTTCACCAGAAGCAACAGTCTGGTTAAAGAAATGAAAATTACTACTTCTGATTTCAAAAAAGCTGAGAAAATTATTGGGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACTACCAAATCATCTAGAAAATGCGTAGATTGCTGTTACAGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : TAAAAGAACCAAGGTGCTTCTCACTAAAGTCTCGAACTCGGTATTAATTCCCGGACACTAAAGTGTATATCATTTCTCTAGCCGCTAGCCGTTTGGCCCTCTGCTTTTTTCCTGCCTGTCCGGTGCTGGTTGAGGAGCCAAAGGTGCAGGTACAGGTGAAAATAGGTTTGCAGGTAGGCCCTTCCGCCTTAAACGAATAAGCCGGTAAGGGAAGTTTCTTTGCCTGACAATATTCCTGCAAGGCAAAAATAGGGTCTTTTGACATGTTAATCGTCACTTCTTCATTACTGGCCGGCAAATCTATTATCTTGGTCTTCAAGTCTGGAACTGGTAAGCCCAGGACAGCAGCTAGCAGGTCTACGGATGCCCGCTGAGTCGCTCCTTTCTTTGTCAAGTCCTCGTATACGGCAGACCGGTACTCTATATTATTTACTCTGATAGCGCTCTGGGCAGCGAATACCGGTAAGTTACCACGAATCGTGTTGGTCACTTTGTATACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //