Array 1 109815-107708 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZP01000010.1 Salmonella enterica subsp. enterica serovar Cubana strain 49-1017 NODE_10_length_180267_cov_3.89656, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 109814 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 109753 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 109692 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 109631 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 109570 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 109509 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 109448 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 109387 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 109326 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 109265 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 109204 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 109143 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 109082 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 109021 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 108960 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 108899 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 108838 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 108777 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 108716 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 108655 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 108594 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 108533 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 108469 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 108408 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 108347 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108286 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 108225 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 108164 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 108103 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 108042 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 107981 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 107920 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 107859 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 107798 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107737 29 93.1 0 A...........T................ | A [107710] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127625-127048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZP01000010.1 Salmonella enterica subsp. enterica serovar Cubana strain 49-1017 NODE_10_length_180267_cov_3.89656, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127624 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 127563 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 127502 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 127441 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 127380 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 127319 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 127258 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 127197 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 127136 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 127075 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //