Array 1 210336-208596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUN01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N30645 N30645_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210335 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210274 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210213 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210152 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210091 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210030 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 209969 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 209908 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 209847 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209786 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209725 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209664 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209603 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209542 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209481 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209420 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209359 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209298 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209236 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209174 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209113 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209052 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 208991 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 208930 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208869 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208808 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208747 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208686 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208625 29 100.0 0 ............................. | A [208598] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228875-227017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUN01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N30645 N30645_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228874 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228813 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228752 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228691 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228630 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228569 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228508 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228447 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228386 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228325 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228264 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228203 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228142 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228081 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228020 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 227959 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 227898 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 227837 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227776 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227715 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227654 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227593 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227532 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227471 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227410 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227349 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227288 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227227 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227166 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227105 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227044 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //