Array 1 50-323 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDM01000006.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIA .SLX_12186.D706_D507.HJ72NBBXX.s_1.r.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 111 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 172 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 233 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 294 29 96.6 0 A............................ | A [320] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTAGCGGGGATAAACCGGCTGATAGCCAACCTGTAAGTGATCGTGATGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73028-75984 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDM01000017.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIA .SLX_12186.D706_D507.HJ72NBBXX.s_1.r.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73028 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 73089 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 73150 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 73211 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 73272 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 73333 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 73394 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 73455 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 73516 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 73577 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 73638 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 73699 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 73760 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 73821 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 73882 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 73943 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 74004 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 74065 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 74126 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 74187 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 74248 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 74309 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 74371 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 74432 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 74493 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 74554 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 74615 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 74676 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 74737 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 74798 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 74859 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 74920 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 74981 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 75042 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 75103 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 75164 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 75225 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 75286 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 75347 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 75408 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 75469 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 75530 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 75591 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 75652 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 75713 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 75774 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 75835 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 75896 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 75957 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84425-85124 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDM01000017.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIA .SLX_12186.D706_D507.HJ72NBBXX.s_1.r.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84425 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 84486 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 84547 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 84608 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 84669 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 84730 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 84791 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 84852 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 84913 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 84974 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 85035 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 85096 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : ACATAAACGGACGCGCGGGGATCCGAATTTTTGTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //