Array 1 16059-17368 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROA01000009.1 Cronobacter dublinensis strain cro981C3 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16059 29 100.0 32 ............................. TGTATCGCGTCATAAATACCCGAAATAGCAGC 16120 29 100.0 32 ............................. TCTTTCGCGTTACGCTTCGTGATGAGGATGAA 16181 29 100.0 32 ............................. GTCCTGCTCAGTGATATAGAAATTCCTCCGGA 16242 29 100.0 32 ............................. CTGGGAGGCTTTGTAGGCACGTTAATCGGTGT 16303 29 100.0 32 ............................. GGATGCCCCTGATTACTGGACAGGTGAGCAAG 16364 29 100.0 32 ............................. AACAATGTTGACTTCGAGAGGTTCCATCCATT 16425 29 100.0 32 ............................. GCGCTGCCAGCACCGTTCCGGGGCCAGCAGGG 16486 29 93.1 32 .G.G......................... GGCTTGGAAAACCAAAAGGCGCGGGCGCGAAA 16547 29 100.0 32 ............................. TAATGCGCGACAGCCAGACAAACTTTCTTCAA 16608 29 100.0 32 ............................. TAATGCGCGACAGCCAGACAAACTTTCTTCAA 16669 29 100.0 32 ............................. CCGGCACCGTCGCCCGCGTAGCGCGTCATGTC 16730 29 100.0 32 ............................. CCGTGCGCTGCTCGCCCTCAAATGCAATAGCC 16791 29 96.6 32 ............................C ATTAACCGCCTGTTAGTACCTGCGCCGCGTGA 16852 29 100.0 32 ............................. AGTAACTTATGGTCAACGGCCACCAGCGGCTT 16913 29 100.0 32 ............................. GGTTTGTGTTCACCGCTTAAGTTAATGATATT 16974 29 96.6 32 .................A........... CGTTATAGAGAGCGTGCAGCTCGATCCTCCCC 17035 29 96.6 32 .....................G....... TTAAGTTGTTGATTAAAAAGGCGCTAACCGGC 17096 29 100.0 32 ............................. ACCCAATTATTCGCGCTCGTTTTTCTGCTCTG 17157 29 100.0 32 ............................. GGCTTTTGGGTGGGGGTGGTGGCAGCGCGAGC 17218 29 100.0 32 ............................. TCGGCAAAAGTACAATTTGTGAAACGTTACTA 17279 29 100.0 32 ............................. ATATACGCCGATGCAGTGCCGGAAACCGACCC 17340 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACTATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGTCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGTAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43789-45403 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROA01000009.1 Cronobacter dublinensis strain cro981C3 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43789 29 100.0 32 ............................. GCATTCTTCCATTGCAATAGTGCACTATCCGC 43850 29 100.0 32 ............................. CCCTGGGTCGTGAACTGGGAGCAGGAGCTTAA 43911 29 100.0 32 ............................. CCATCGCCGCCGCTGGTGTAGAATCGCGCCTC 43972 29 100.0 32 ............................. TCGCCGGTCGGGTCGTACGTGTCTTTGTCTTT 44033 29 100.0 32 ............................. CAATTGCTTAACGCCGAGGTGGAGCAGCAGGC 44094 29 100.0 32 ............................. TTGACCAGCCGCACCATGCCCGCGCGGTGGTC 44155 29 96.6 32 ........................G.... TTTCGTTTGCGTCGCCCGCGTGCGTCGGGACG 44216 29 100.0 32 ............................. AAAGAGGCGTACAAGGAGGCGAAAAGCCTCGG 44277 29 100.0 32 ............................. GCACGCTGACACATACCTAAAAAACGCCAAAT 44338 29 100.0 32 ............................. CTTTACGGCTCCGACCAGCTCGCGGGCGACTA 44399 29 100.0 32 ............................. TGCTCCCAAAGCGATTGCAGGCATTCGTGATA 44460 29 96.6 32 ..........T.................. CGGCGGCGCTGGCCGCTACACCGGGCGAGTGG 44521 29 96.6 32 ............................A CGCATCGCTGAACTGGAGGCGAGGACGGTTAA 44582 29 100.0 32 ............................. CAACGCCCCGCCAGTGTAGGAGCACGGCAGGG 44643 29 100.0 32 ............................. GATTTCCTGATAATCACACTCAAATAGCCTGG 44704 29 100.0 32 ............................. GATGAGGCTGTCCGGACAGGAGGTCGGGCATT 44765 29 100.0 32 ............................. GTCGGTAATCGGCAGCGACATAAAAAATATGT 44826 29 100.0 32 ............................. AGTACACGCGAATCGTTCCAAAATGACACCGA 44887 29 100.0 32 ............................. GTGGTGCCGCGTGAAAATACACTTCTACAGCC 44948 29 93.1 32 ...........AG................ GTTATCCAAAACCTTAACCACCCCCGACGCGT 45009 29 96.6 32 ............G................ CCGTTTTTTCAGCTGGCCATAATATTATCGCC 45070 29 96.6 32 ............G................ GATGCCGGGATTACAATGGATGACGGCATGGA 45131 29 96.6 32 ............G................ TACAGTATTTACCGCATCGTTAGTGACGCGCC 45192 29 96.6 32 ............G................ ATTTCGCTGAAACAGTAACGGCGCTCTGACAG 45253 29 96.6 32 ............A................ CGCGAACAGATACCAAACGAGATGGGTTTGGG 45314 29 96.6 31 .C........................... CTCGGCATTACAGTCAAAAATCTGGAGAGCC 45374 29 75.9 0 ..A.....TC.A.C......A.......T | G [45396] ========== ====== ====== ====== ============================= ================================ ================== 27 29 97.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCTGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAATTCCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTGTGATTATTTTTTATAAATATGATAACGCTTCTTAAAATAGCTAACTTGTATTTTAGTTAATGGTTTTTAAAGCTTTATTACAATGTGTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAGATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGCGCGTGATCGTGCTTATAGCCAAAGCCATCATAAATGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGTAAGGCGTTGATAAAAGCAGGGTTTTATGAAGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGCTCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //