Array 1 25-1764 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJZL01000293.1 Salmonella enterica strain FDA858387-188 SRR1537518_NODE_295_ID_589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 86 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 147 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 208 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 269 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 330 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 391 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 452 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 513 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 574 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 636 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 697 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 759 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 820 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 881 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 942 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 1003 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 1064 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 1125 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 1186 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1247 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 1308 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 1369 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1430 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1491 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 1552 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 1613 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 1674 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1735 29 89.7 0 A...........TC............... | A [1761] ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGACGCGCACCGAGCGCCGCAACG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 355-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJZL01000411.1 Salmonella enterica strain FDA858387-188 SRR1537518_NODE_413_ID_825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 354 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 293 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 232 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 171 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 109 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 48 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAGGGCTGGCTGACGCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : TGTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19717-20842 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJZL01000008.1 Salmonella enterica strain FDA858387-188 SRR1537518_NODE_8_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19717 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 19778 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 19839 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 19900 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 19961 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 20022 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 20083 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 20144 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 20205 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 20266 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 20327 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 20388 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 20449 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 20510 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 20571 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 20632 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 20693 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 20754 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 20815 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //