Array 1 33133-33283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000022.1 Actinopolyspora mortivallis strain M5A NODE_22_length_64876_cov_27.2762_ID_2097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33133 29 96.6 32 ............................C TGCGGTTGTGTGCAGGCCTCGCGCATGGCGGC 33194 29 100.0 32 ............................. GAGTGGGCCGTTCGTAAGGCGTCTGACCTGGT 33255 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCACGCGCGGGGATGGACCG # Left flank : CAGAGACCCGGGGATCTCCTGGTCGCTGTCACGGTCCTCGCGGGGTTGTCAGGGCCGCCCGCCCGGGCGCGACGTCGAGGGACGCCAGTACCGCGCTCCCACGGCGAAGGCCACGGTGAGACACGCCAGCACCCCGAGGCCCCAGAAGCTGGGCTGCTCGTCCGCGTGGAACAACGACGGGATGAGCAACATCAACACGGCGGCCGAGACGGACATCCCGGCCAGGCTGACCACGAACAGCCGTGTTCCTCTCATCGTCCTCCCCCTTCGTGGAAGCAGCCGGTGCTCCGGCAACAGCCTACGTACCCGTGCGGGCACCGGACGATGTGTGCCGCAGCCGGGTCGCCTACCTCGGCGCTTCTCCGGTGGTGCCTTCTGCTCCGTCGACTGCGTGTCGGGGAGGTTGTTGTGGTGCTCGGTGGGGGCTGGCTAGGATGCGCGTGCTTCCCACGGGAGATCACAAGTGAATAACGGGCCTGCGGAGTCGCAGGTCAGTACGT # Right flank : GAGGTGGCCCGGTTTTAGGCGAAATCGGGCCACGCCTTCCCGCGTCAGCGGCTCATGACGACGGGTCGGACGGGACACCCCGGCCGCGCTGTCCCGTGTCGGAGGAGTCCGGCCCGGAGAACACGACCTCCGGGTAGTGCGGTGACGGCCCGTCGAACAGGGGTGAGGTTTCACCGGCCAGGTGTTGCCGCACGAAGGCCGTGACGTAGGCGCGGGTGATCAGCACCGAACGAAGCGCGGGGAGCCTGTCCTGATTGTTCCGACCGGTATCGGCGGGTAGTTCGTCGCGCAGTCCGAGCTGGTCGATCAGGACCGGCCAGTCGGTGAAGGAGGAATGGCCGGTGCCGCGCACCAGCAGGAACCGTTTCCATCCCGCCAGCTGCGACCACGTCCGGTGCCACGAAGGATCGAGGTCGGGCTGTTCCAGTCGCCGACCGTTTCCCAGCAGCAGCACCGGAGCCCGTGTACCGGCCAGGGAGTCGGGGTCGTGGATCGTGCCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72264-71991 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000002.1 Actinopolyspora mortivallis strain M5A NODE_2_length_289531_cov_27.9058_ID_2057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72263 29 100.0 32 ............................. GGGGTTCTTCGGCGTGGGTGGCGGAGGGCTCG 72202 29 100.0 32 ............................. GGCCGCTGCCAGAAGGAAGAGGAAGAGGAGCC 72141 29 100.0 32 ............................. CCGAACTGGAGGCCGAGCTCAACCGGCTCGAC 72080 29 96.6 32 ............................C ACGTCGGCAACCGCGCGGCCTGGATCGGTGTC 72019 29 93.1 0 ........................A...T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : AGGCATAGGCATGGCCGAACAGAGCGTCTTTCCCCTCCGATGAATATCCCGGTGGGATCTCTACTTGATTTTGAAAAGACGGAGTGATCTTTCCGATATCATGCAGCGCTGCCCACAACTGCAGGATCGCACACGCGTCCGGCTCGGAAACCCCCAAGCTCGTAGCCAACCGAGTGCGTATCCCCGCCGAGACGACATCCTGCCACAGAATCCGCACCGCTGCGGCCGTGTCCAACCCATGACAGGCGACCGGATAGCGGGCCCCACCCATGCCCCGCTCCTTACCCCACAGCAGCAGATCCACCAGATCTGAAGCCACGTGTCTGACACCCCCTGCTACCCAACAGAGGCCTTGTATGTCGTCAACTGCTGTAGGGTAACCACGACCACCGACACCATGAGAACGAAACGACAACAACCCAGCACCATGAGTACAGCAGCTTCCTCACCAGTACACAAAAACCGTCCAAGCTCCTTCTAAAACACCAGGTCGCGAAGGG # Right flank : CGCAACGGGCGGTCAAACGCCGCGCAGCCGAAGCTGACCTGAACACAACAGTGATCAGCCTGCTCAACAAACACCACATCAACGTGCGCTTCCTCGCCTCAGCTACTACGGCGACTAAGCCGGATCACTGCTGCCAGGGGACAGCGCCACCTCAAGCCAAACCGTACACTGTTACGCCTGAGCAATCGAGGCCAACTCAAAGCCCACACTTCGACACCGACACCCAACAGGCCATGCTCCGCGAAGCAGGCCGGAAACTGATCATCCAAACCGTCCGCGACGACCTGACCACCACGGGCAAATACCGCTGCCTGAACAGAATGCTCACCTACGATGAACTGGTCTACTTGAACACACTGGCGCTAACACGCCGATGTCTGGAAGGGCCAACACAGCCCTACAAACCATTCCGGGTGCGGATGGTAAACGATGTATACGATCCTGGTCTACGACACTCTCAGCGAACGCAACGCCCGAGTGCTGCGTACCTGTCGAAAACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81859-82562 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000002.1 Actinopolyspora mortivallis strain M5A NODE_2_length_289531_cov_27.9058_ID_2057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 81859 29 100.0 32 ............................. CGTTCGTGCTCGGGGTGCTCGACGAACTGTTC 81920 29 100.0 32 ............................. CAGACAAATAACCGCCTATGGGTAGACGGGCA 81981 29 100.0 32 ............................. TCGACACCGCACTGGCCGAGGCGGTCGCCCAG 82042 29 100.0 32 ............................. CTAGCAGCCCCCGCCGACACGCGGGGCTGATC 82103 29 100.0 32 ............................. CAGACAAATAACCGCCTATGGGTAGACGGGCA 82164 29 100.0 32 ............................. TCACAGTCGGCAGCGCCGACAGCGCACACCCC 82225 29 100.0 32 ............................. GGCTGACCAATCGAAAAACGCCATCCCCGCTG 82286 29 100.0 32 ............................. CGCCTCCCCGATTGCTGCTGTCAGCGGCGAGT 82347 29 100.0 32 ............................. TAGCCGCTGTGTGCGGTGCACGAGCGTGGTGA 82408 29 100.0 32 ............................. CTAGCAGCCCCCGCCGACACGCGGGGCTGATC 82469 29 100.0 36 ............................. GTCGAATACGAGGAAGAGGACAACCCCCCCCCCGCC 82534 29 93.1 0 ........................A.T.. | ========== ====== ====== ====== ============================= ==================================== ================== 12 29 99.4 32 GTGCTCTCCACGCACGTGGAGGTGCTCCG # Left flank : CCCCAAATCGTCACCGACATCCAACAACTCCTCGACCCCACCGTCGAGCCCAACAACGACGACAACGACCCCGAAGAAACCGAACTCGTCCACCTCTGGGACCCCGACCTCGGAGCGATCGACGCCGGAATCAACCACGCTGACAAGCTGGAATAACCATGCCCAACCTCGTCGTCATCTCCACCACCGCGGTTCCCGAGTACGTACGCGGTTCCCTCAGCCGCTGGCTCACCGAACCCGCCCCCGGACTCTACGTCGGATCGATCTCCGCCAAAGTACGAGACCACCTCTGGCACCAAGTCAGCGCCGCAGTCGACGAAGGAACAGCCGTGTGCGTCTACCCCGCCAACAACGAACAACGCTACATCGTAGAAACCGCAGGCCAACAACGACGCCGAATCATCGACTACGACGGCCTCCAGCTCATCGCCCTCGATCCCATCCACCACCCCCACGCTCAAAACGAACAACTCCCCTTCTAAAATCCCAGTTCACGAAGG # Right flank : GTTCACGGTGATTGGGCCGTAAGAGCTTCGTTGTGCTTTTACGGTTGGGTATTCCGCGAAACGCACAGCTTCGCTGTCTCGAAGGTGTGTTAAGAGGGTTTCTCATTTGGGGATGTTCTTGTAGCAGGTCAGCGCTGCGGCGAGAGTGAGGGATCCGGCAAAGTTGCTGGCTGTACGTTCCCAACGGACGGTCAGGCGGCGATAGTTGAACAGCCAGGAGAAGCCACGTTCGACACGCCAGCGGTAGCGTCCGAGCTTGGTATGGGATTCGACGTCGGTACGGGCGATGCACGGCACGATGTTCCGGGTGCGCAGCCAGCGGCATAGGTCGCGTAGTCATAGCCCGTGTCCGCGTGCAGCTTCGCCGGCCTGCGGCGTCGTGGTCCGCGAGGCGACCGCACCTCCGGGATCGTGTGCACGAGAGGTGTGAGGGCATTCATGCCGTGGGTGTTGGCCCCAGAGACCGCCACCGACAGCAGTAGACCGCTCGCCTCGGCCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85246-85428 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000003.1 Actinopolyspora mortivallis strain M5A NODE_3_length_257337_cov_28.9612_ID_2059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 85246 37 100.0 37 ..................................... GGCTTGGTGCGCAGGTGTCGGACCCACTCCTCGACGT 85320 37 97.3 35 ............T........................ CACATCCACCACAACGAACGCCACTGGTGGGGACA 85392 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 98.2 36 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : CCTGCGCGGGGACCAACCGGGCTACACCCCGTGGATTGCGAGCTGACCGTGGAGCTGCTGATCACCTACGACGTGGACACCACCACCCCGGAGGGGCGCCGCCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGGATCCGTGTGCAGAAGTCCGTGTTCGAGGTCGTCTGCCGTCGCTCCGACTGGATGTACATGAAGCAGCGACTCAACGAGATCATCGACCCGGCCGAGGACAGCATCCGGATCTACGCTCTCGACCGTGGGAGCTTCGCGGCGGCCGAGCACATGGGGCAGTCGCCGCCCGCGCCGCACGACACGCCGCTGGTGTTCTGAACTTCCGGCAAGAACATGATCGAGTGTCGATGTACGGCTTCGGAAGTGCAAGCGTGTCTCGACACGCCGCGAGGTTCCCAAGCACCTGCTCGGCGTGTCGGTCACGGGATAGTCACAGCGGCGAGGTGGCTAACCTGGAAACCCCTGTTCAACTGCCACAG # Right flank : CCTGGATCTCTCCGCAGAAGTGGGACGCCTGCCAGGACGGTGGCGCCACATCGGTTACCTCGGCGGCGGGAACTCGGCGACCGCCGTGTTCCAGTCGAAGGTGGCCAGACCGTCCGCGCCGCGGCCGGTGAGAACATCCGGGTCGAGCAGCCGGACACCGGCCTCGACCAACGAGCGAGCAGTGGTCGGGTAGGCCGGATGTCGGCGCAGCACGGGTTTCACGCAGGGTGCGGCGGTGGGAGTCGGCACCACACACCTCCCAGCCCACCCCGTGCAGCAGCCCGACCGGTTCGGCCAGCTCGCGCACCGGCGGCGCAGCCGCACCGATCAGACACACCACAGACTTGTCCGATCCGGTCATTGCAGCACCCCGCACGTGGGGCCAGCGGCCGCAGGTCCGACGTGGCCGAGCGGGCACAACGGCGTCGCATCATCGAGGCGGCCAGCGGCATCCCCACCGGGTTCACCGAACTCGACCGGCTCACCAACGGGCCGCAGCC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 199822-199366 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000003.1 Actinopolyspora mortivallis strain M5A NODE_3_length_257337_cov_28.9612_ID_2059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199821 29 100.0 32 ............................. CCAGCTCATATGCCCACATCCGAGCCCGCGCG 199760 29 96.6 32 G............................ GTCGGCCAGAGCTGCCAGGCGTTCGGTTTCGC 199699 29 100.0 32 ............................. GTGGTCGATGTCGACCTCGGAGGGATCGGAGA 199638 29 100.0 32 ............................. ACAGGGCCTCCGAGCTTAACGGAATGCTGAGT 199577 29 96.6 32 G............................ CATGGTGGGCACCCATGTTCTCGGTGGACCTG 199516 29 100.0 32 ............................. CGTCGATCTCGGATCCGGCCTTGATCTCGTCC 199455 29 100.0 32 ............................. CTCTGTGACCCACTCGTTGGCTAGATCCAGTT 199394 29 89.7 0 G......................C..G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 TGTACGCCCCGCAGGCGCGGGGATGGACC # Left flank : GGAACGCGGCTACGCCCTCGACGACGGTGAGCAGGAGGTCGGGGTGCGCTGCTACGCCGTGGCCGTCCCCGACGCCCCGGCCGCCTCGGCGATCTCGATCAGCGGGCCCGAGGCGCGGATGAAGCGGATCTCCACCGAGGAGGTCGTCCCACTGATGCGTCGGCTGGCCACCGAACTCGGCACCGAACTCAGCTCGACGGGCGAGGCGGGCTGAGACGCGGTATGCCCCAGACACGGGTGTGGCCCCTGCTGGGCCAGTTTTAGGCAAAATCGGGGCGTCGAGGAAGGCCGAGTCGCCCCACATCCCCCTCACGGTAGGACTACAGTGGACAGAGCTGGAGGCGGGCGAAGAGTCCTTCGAAAACGGGGCTTCTTCCGGTTCGGTGAGGCACCCGTCGGGGAGGTTGTTGTGATGCTCGGAGCAGGCTGGCTAGGATGCGCATGCTTCCCACGGAAGATCACAAGTGAATAACGCGACCGGAAAGTCGCAGGGCAATACG # Right flank : GTGGTGGGCCAGTTTTAGGCAAAATCGGCACACGTACGCAGGAACAGGGCAAGGCATGAAAACGGCGCCCCGGGAATTCCCCGAGGGCGCCGTTGTTGTCTACGGCCTCACTCGAACCGGTTGTTCTTCACCGCGTCGAGGAACGCCGTCCACTGCTGGCGGGTGGCGGCGACGTAGCCGAGCTCGCGGTTCTTGGTGTCACGCACGGCGGCACCGTCGCCGACGCGGCCCACCTCGACGCAGTTGCTAACCCGGCCGGAACGGCTCGATTTCCGCCATCCTCGGGGGTGTACCGTCATGCTGTTTCCTCCAGCTGCTCTATGCGGGTAGCGATGAACCAGGCCGTCTCTGCCTTGATCATCGCTACCTGTTGGAGGTTATCTACCCCATCGCGGTAGGTGGTGGTGACTGCTCCGGGAGAGGAACATTCCGGAGTCGAACATTTCGAGTTGCGCGATCGGCGCTGCGGTGCCGAATTCAAAGTAGATGAAGTGCCCGCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTACGCCCCGCAGGCGCGGGGATGGACC # Alternate repeat : GGTACGCCCCGCAGGCGCGGGGATGGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 28467-28316 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000042.1 Actinopolyspora mortivallis strain M5A NODE_42_length_30383_cov_27.6591_ID_2137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28466 29 100.0 32 ............................. CTGTGGCTGATGACGAACTCAAAGCCGGACGT 28405 29 96.6 32 ..A.......................... CCCAGTTTTCTTCCGGGAACTTCGATTTGGGA 28344 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GATTTGTATTCCCCGCACACGCGGGGATGGACCGGTTCCGTCGAGGACCGGCCTGGGTCAGAGGACGTGGTGGTTGAGAAGGGGAAGTGTGTGGCAACACGCCACGAGATTCCGAAGCACCTGATCGGCGTGTCGATCACGAACCGGTCACAGCCGGGGTACGGCTGTCCTGAAAACCCCTGCTCAACTGCCGTGGCGCCAGCCCTCCGAGGCTGGCGAGGATCGCAACTGCGAAGTCTGCACGTCCCGCGAATCCAGCGAGACCAGTGGCGCCAGCCCTCCAGGGCTGGCGAGGATCGCAACGGGATCTGGGGTGGGCTGACCGGCACCGAACGAGCCGGTGGCGCCAGTCCTCCGGAGCTGGCGAGGAGCACAACCGAAACACGTAGGGAGCACGCTGAACAGGAAATCAGGGCCCCTGCTGCTGGCACCGTTGCTTCTCGGAACAAAAGTGATTCCCACAGCAGCAAAGCGCTGTTAAGATCGCAGGTCGCAAAGGG # Right flank : TGGTGGGCCAGTTTTAGGCAAAATCGGGCCACGCACTCGCGGCGCACGCGGGGGATACCCAGGAGCTGGCGAGGATCGCTGAGGCGGCACTGCTTCCCCCACTCACTCACCGGACTCGAAGTCCCGGAGGAGAGCCCCGGCGTCTCCCTCCGCCCGGAAACCGGCCCGTACTAGTCTGCTTCCCGTGCCGTACCCGATCCCGGATCCACACCGGACCGGAACGCTCGACGTCGGCGAGGGGCACCGGATCCACTGGGAGGTTCGCGGCGCCCCGGACAGCGAACCGGCCGTGGTGCTGCACGGCGGCCCCGGCTCCGGGGCCCTGCCCGGCTGGCAGCGGTTCTTCGACCCCGACCGCTACCGGGTCGTGCTGTTCGACCAGCGCGGCTGCGGACGCAGCACCCCGCACGCGGGCGACACGGTCGCCGCGCTGAACCACAACACCACCGCGCACCTGATCTCCGACCTGGAACGGCTGCGCGAACACCTGGGCATCGAGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 29260-28933 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000042.1 Actinopolyspora mortivallis strain M5A NODE_42_length_30383_cov_27.6591_ID_2137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 29259 29 72.4 86 ..AG.......C........C.G.C.G.G CCGACCTTCCGGGGCCGGCGCGGGCACACACCCCCAACAGGCATCACAACTCGATAACGTAGCCACGAAGCCGCAGGGCAATACGT 29144 29 100.0 32 ............................. ACTTTCAGCGGGCCCATCCGGATCGGCATCCG 29083 29 100.0 32 ............................. ACGGCGGTTTGCTGGTGTGCCGGTTTCGACGG 29022 29 86.2 32 ..ACG.......................T GTTGCTGACCGTGCCCTGGGATCGTTTGATTT 28961 29 93.1 0 ..A.........................G | ========== ====== ====== ====== ============================= ====================================================================================== ================== 5 29 90.3 46 GTGTTCCCCGCACACGCGGGGATGGACCC # Left flank : CACCCACACCCTGATCGAACGAGTACTCGCCATCGACACCGAGCAACGCCGCACCACCCTCGTCTGCGCCTGGGATCGCCCCGCACGCTCCCAGCACGACGAAGGCGGCAGTCTCTACCCGGACAGCTACCTCCGGGTGGCCAGCCATCCCCCCACAGGTTGGGGCGCGTTGTGGTGGGTCGGTGAACATCACGGCCGGCCCTCCCTGCTGGTCACCCACGACCCCACCGGCCCGCACGACCGCCCCGAACTGACCTTCGACATCGACGCCGACGAGTTCTTCCCCACCACGGCCGCGTTGCCTCTCGAGGCCGTGCGCCGCGCTCTGCACGACTACATCAGCACCGCACAGCTACCCACCCGCGTGGGCTGGCAACCCACCATGATGCTGCTCTGAACACGGGAGAAACCAACGGCGCGGAAAAGCACCGTGAACCGTCGCTTGATACACAAGGCTATTCCCCCAGCGGGATAGCACTACTAAGATCGCAAGCCTCGAA # Right flank : GTTCCGTCGAGGACCGGCCTGGGTCAGAGGACGTGGTGGTTGAGAAGGGGAAGTGTGTGGCAACACGCCACGAGATTCCGAAGCACCTGATCGGCGTGTCGATCACGAACCGGTCACAGCCGGGGTACGGCTGTCCTGAAAACCCCTGCTCAACTGCCGTGGCGCCAGCCCTCCGAGGCTGGCGAGGATCGCAACTGCGAAGTCTGCACGTCCCGCGAATCCAGCGAGACCAGTGGCGCCAGCCCTCCAGGGCTGGCGAGGATCGCAACGGGATCTGGGGTGGGCTGACCGGCACCGAACGAGCCGGTGGCGCCAGTCCTCCGGAGCTGGCGAGGAGCACAACCGAAACACGTAGGGAGCACGCTGAACAGGAAATCAGGGCCCCTGCTGCTGGCACCGTTGCTTCTCGGAACAAAAGTGATTCCCACAGCAGCAAAGCGCTGTTAAGATCGCAGGTCGCAAAGGGGTGAGCCCCGCGCACGCGGGGATGGACCGCTGTG # Questionable array : NO Score: 4.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-1.26, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9914-9181 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000043.1 Actinopolyspora mortivallis strain M5A NODE_43_length_29046_cov_27.3148_ID_2139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 9913 29 96.6 32 ............................G CTTCCTGAGACCCCGTTACACCCGCCCCCGCA 9852 29 100.0 32 ............................. TCGGTGGCGACCTCGACAGCCCGCCGCATCTC 9791 29 100.0 32 ............................. TCGGTGGCGACCTCGACAGCCCGCCGCATCTC 9730 29 100.0 32 ............................. GCCCCGGCCGATTCCACGAACGACCGGCACGA 9669 29 100.0 32 ............................. TCGGTGGACTACTTCGCTGGATGCTGGCACGC 9608 29 100.0 32 ............................. TGGTCGCTGACCGCACGTACCCCAGTGCCGCG 9547 29 96.6 32 ............................T CGTCGAATCGAATTCTGATGTCGCCGCCGGTG 9486 29 96.6 32 ............................G AGTGGCTTGCTGGCGCACACGGTGCTGGACTA 9425 29 96.6 65 ............................G CCCTGCCCGACTACCTGCCCGCCGAGTGGGGGGCGGTGCCCGTGCGGCAGACCCTCACCGAAGAG 9331 29 96.6 32 ............................G CCCCGGCACACCGCCGTGCCCACGTCACCCTT 9270 29 100.0 32 ............................. CCGCGGTCGCGCAGATGTTCGCCGACGCGCAC 9209 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================= ================== 12 29 98.6 35 GTGCTCCCCGCAGGCGCGGGGATGATCCC # Left flank : GGAACCGAGGACAGCCCGAGCCCCGGACAGGCACTCAACGCCGTGTGCGTCAGGTGGACTTCGAGGTCGCCGAGACCGACTACGTGTTCGGTGCCGACTCACACACCGAGATGCTCGCTGGCATCACCGGACTCGGTGCTCCCTGCGGACGCGGGGAGGGTCCGCGTGATCGGCGGGGGTTGGTGAAGGTCAATCCTGGTGTGTTCCGCGGAGAACGTCTCCGCTTGTGTCGGTGATGAGTTGTGGGATGGTTAGTGCGTTCTCGGGGCCGGTCGACAGGCTGTGTCTACTACGTGCCCGTCCAGGGGGCCTGTGGTCGGCTCGGACGCCCAGGAGTGGAATCCCTCCGAGAGATCGGGCACGATCTCCTCCGAGACGGTGTGGAGGCGTCGGGAGAGAGGCGCAGGAAGTTCAAACGGAAGTAGGCTGGGTGGCAGAGCTGTTGGACAAAACCAAAGCAGAATCGGCTGTGGCCGCGCTATAGTGCCTGGTCATCAAGT # Right flank : GTGCGCTCCACGGTGCAACGCGGTGCCGGTCCGTTTGGTCACCGGATCAAGACCGGCCGAGACCCGGACTCGTAGCGCACCGTTCGGCGGTTGATCGATCGTGCCCCGTTGCCGACGAGCGCCCTTCGAACGACGAGCCATGGACCCAGAACAAGGGGTTCTGGGGCGCAAGAACCGACGAAGCGGAACCCCTGAATCAAAATCCCAGGTCACAACGGAGCCGCTGAGGGGACTCGAACCCCTGACCATCCGCTTACAAGGCGGGTGCTCTACCGACTGAGCTACAGCGGCACGCGTGTCTGATCGCACGCCCCTTCCATCCTAATCCCCCGCCGGAGCCCTCTCGGGCACCGGTCCCGCCACCGCGGCACCCTCACCGACCTCACCGGAGACCTCCGATCAGGCATCCCACGATGCGGTGAATCGCACTCTCGTCGGACCGGGAACGCGTACGCTCGGGTGTCGGGGCGAAGCACCTTCCTTCGTTCCTTCCCGCGGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11678-12619 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000043.1 Actinopolyspora mortivallis strain M5A NODE_43_length_29046_cov_27.3148_ID_2139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11678 29 100.0 32 ............................. CGCTGCGCCAGGTCGTAGTCCACCCGCACACT 11739 29 100.0 32 ............................. TCGTCGTCGAGTACGACGGCCTCACCGCCCGG 11800 29 100.0 32 ............................. CTAATCCGGCAAGTCTGTCTCCGGTCCAACGA 11861 29 96.6 32 ............................G TCTGAGGATTGGCGGGCCGTGCACCGGTGGCG 11922 29 100.0 31 ............................. TGGTGCCGATAGCAGCTCGTCTGTCAGCCGC 11982 29 96.6 32 ............................G TAATCGACCACGATCCCCCCGAGTCCGGAGGT 12043 29 100.0 32 ............................. TCATCGCCAGCATCGCGAAGGATATGGAGGAA 12104 29 100.0 31 ............................. TGGTGCCGATAGCAGCTCGTCTGTCAGCCGC 12164 29 96.6 32 ............................G CGGTCCCGCACCCCGTTCGAACTCCTCGACGA 12225 29 100.0 32 ............................. AGATCCCGGTTCCCCCTCCGGAGCACCTCCGG 12286 29 100.0 32 ............................. GGGACATTGTACCTGGTCACAGAGGGGGACAG 12347 29 96.6 32 ............................G TTTGCTTGGATTGCCCCGAATCTGGGGCCGTC 12408 29 96.6 32 ............................G TCTGAGGATTGGCGGGCCGTGCACCGGTGGCG 12469 29 100.0 32 ............................. CCGGCCTGGACACAGGCCAGGGCATGCCCTGC 12530 29 96.6 32 ............................G CGGTCCCGCACCCCGTTCGAACTCCTCGACGA 12591 29 93.1 0 ........................CC... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGCTCCCCGCAGGCGCGGGGATGATCCC # Left flank : GGCCGAGCGGACCGGTCATCCTGTCCGTGTGTGGCCCCGGCTGCCGGGTGAGCGCGATCCGCTGCCCCAGGCCGATGCCGTACTGGCCGCGCCGGTGACGTTCAACAGCCTCAACAAGATCGCGGCCGGTATCAGCGACACCCTGGCGGTGAGTCTGGTCAACGAGCTGCTGGTCAGCGGTGTGCCCACCACCGCCGCGCCCTGCGTGAAACCCGTGCTGCGCCGGCATCCCGTCTACCCGGCCAACGTTCGTCTGCTGGCCGATGCCGGCGTCCGGCTGCTCGACCCGGACACGCTCACCGGCCGCGGCACCGACGGCCTGGCCACCTTCGCCTGGAACACGGCAGTCGTTGAGTTTCTTGGGTGGGTGTAAGTGGTGTCAGGGAGCGGGTGGTTGTTGGTCGTGGGGTGTGGTGTGGGGGTAGGTTTGGGTGGTGGTTGTTTGACACAAACTGAAGCTATTTTGCTGTGTCGGGTTGTATAGTGCCTGGTCATCAAGT # Right flank : CGCTTGGTGTTGGACAGAGGATTCCGCTGAACCCGGTTTTCCAGCTCGGAGGGCTGGAGCGCAGTTGGGTCGGCTGGTGGTGGCTTCGTGGGATGTTCCTTGGTTCGGTGTCTTCCGCCGTTCGGCGCGGGCACCGATACTCATGGATTTTTGTGACGTGAGACACTATTTTTCCGGTGGTTGGCGTGAAGCCCCGTATCGCTGTCAGTGGTTCGTGTTTGACTCCCCGTGAATGGTGAGGTTCCGCCTCCCGGCGGTTCACGATCGGATGGGGTAGTTGGAAGAGTTGGAGCTGAGCGAGTCGGCTCGTGCGGTGTGGGCGAAGTCGACCAACGCCGAAGGGGATTGGTTGCCGCTGTGGCGGCACATGGACGATGCGACCGATGTCGCGGGCCGGCTGTTCGACCACTGGCTGGCGTCCAGTGTGGTCCGATTGTTGGCGGCGGAGTTCGGTGGCGATGCGGCCGCTGCCCGTTGTGCGGTGATGTTTCTGGCTGGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 22008-22344 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000043.1 Actinopolyspora mortivallis strain M5A NODE_43_length_29046_cov_27.3148_ID_2139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22008 29 96.6 33 ............................A CTGAGTAGAATTAAGTGGTTTTCCTCCGTAGGT 22070 29 100.0 32 ............................. TGATAACAGTGAGATCACAACAGAGGAAGCGG 22131 29 100.0 33 ............................. TGTCCACGATGTGAAGTAGGATAAAAATAATGA 22193 29 93.1 33 .....T......................C TCCGGAGCAAATCAGAAATCCCCGATACGCTGC 22255 29 100.0 32 ............................. GCGAGCTGGCTGGTCATGCGGTGGCCTCCTCA 22316 29 93.1 0 ........................G...C | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 33 GTGCTCCCCGCAGGCGCGGGGATGATCCG # Left flank : CGTCATAACCGTCGTCGTGCTGACCGCTGTCCCACCCGGGCTGCGTGGACATCTGACCCGTTGGCTGTTGGAGATCAGCCCCGGCGTGTTCGTCGGGAACGTCTCCGCCCGTGTCCGTGAGGAGCTGTGGGAACGCATCCGCGAGTTCGCGGCCGACGGGCGAGCGATCATGGTCCACTCGACGCAGGGTGAGCAGCGACTGTCCTTCGAAGTTCACGGGCACGACTGGACTCCCGTCGACTACGACGGGGTGAAGCTGATGCGTCGGCGGACTGTGCCCGACTACGTGCCCGCTGACGAGGTGCCCGCGCACAAGCCGCTGTCCCAACAGAAGAAGCCCGCCCACACCGACACAGCACCCACGATCAACTCCGAGACCGTGTGGAAGCGTCGGGAGGGGCGCAGGAAGTTCAAACGGAAGTAGCCTGTGATGACCGAACCGTCCGACAAAAGTGAAGCAAAAATGACTGAGGGCGCTGTGTAGTGCCTGGTCATCAAGT # Right flank : CGTTCCTGCGACGCTGGCGACCTCCGGGAGCGTTGTTGCGGGGCATGACGTTGTTGACACCGGGGTAAGCGAGGTGGGTGAAGGGGATGGGTTCTTTTGGCGGCAGGATGAGAACAGCCAAGTATCTCGTCCACCGATCAGAAGGACCCGTCCATGTCCCGCCGTAATGCCCCGCTGGTCGCCGAAGGTCGCGGCAGGCTCGTTAAACGCTGCCAGCACCGCCCGATCGCCCGTGTCGCCGTTGAAATGGGTGAACTGCTACCGCAAGTACGGCGGAGCTGAGCCTGCAAGAACGAGCTTCGGTACCCCGCCGACAGCCCACCGTGCCCCCATCCGAGGCCATCCCCGGAGCGAGTCGCTGCGCTGGGAACACACATACTCTGCAAGTCGCATCGCCTTTGAGCTCAAATAGGAGGGCACCAAGCTCAGTCGCCGCGCCGTGAGCCATCACCTGCGGCCTCTCTGGCTCAACCGGCGGCGGTTTCTCGATCCCACCGGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5651-5439 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000067.1 Actinopolyspora mortivallis strain M5A NODE_67_length_8904_cov_18.4012_ID_2187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5650 29 96.6 32 G............................ CCACTGGCCGAACCGCGGGAAACGTGAGCGCG 5589 29 100.0 32 ............................. TGGCGTATTATCTTGAATACAGCGATGATCGA 5528 29 100.0 32 ............................. CGTGCCGGTGTCGTACTCACCCCGGGTGATGC 5467 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CGTAAGCCCCGCGCATGCGGGGATGGACC # Left flank : TGTATTCCCCGCACACGCGGGGATGGTCCGGTTCCGTCGAGGACCGGCCTGGGTCGGAGAACGTGGTGGTTGAGAAGGGGAAGTGTGTGGCAACACGCCACGAGGTTCCGAAGCACCTGATCGGCGTGTCGATCACGAACCGGTCACAGCCGGAGTGTGGCCATCCCGGAAATCCCTGCTCAACTGCCGTGGCGCCAGCCCTCCGAGGCTGGCGAGGATCGCAACTGGGCGAGTCTGCGACCGAAGCCGCCGAGCGGATCGAGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACCACCACACGATGCTTTTCGCCTTGTCGCGGGCTTTGCGTGGCGCCAGCCCCCCCAGGGCTGGCGAGGAGGAGCACAACCGACACACGTAGGGAGCACGCTGGACAGGAATCGGAGCATCCCCTGCTGCTGGCGCCGTCCGTCTCGGAACAAAAGTGATTCCCACAGCAGCAAAGCACTGTTAAGATCGCAGGTCGCAAAGG # Right flank : CCGTCATAGCGGGTCGCCACCCGCGCGATCCGCCCCTCCCCGCCCACGGCGCTAGACTCTGCCCCGCCGCCGAGCGGGCGGCACGAGAGCAGGGCATCCGAAAAGGACCGGGGTTGACCGTTCAGCAGCAGGTGCGGGGGCCGCTGTCGGCGGCGGTGGCCCGGCTGTGCACGGAACTGCGCCCCCGGCTCGGCGCGGACGCGGCCGCCGGAGTGGACGAGGTGCTGGAACGGCTGACCGCCCCGCTGCAACTGGCGGTGGTGGGCCGGGTCGCCTCGGGCAAGTCGACCCTGGTCAACGCGCTGATCGGGCGGAACGTCGCCCCCACCGACGTGGGCGAGTGCACCCGGGTGGTCACCCGCTTCCGCTACGGCACGGTGGACCGGATCGAGGTGGTGCTGCTCGACGGCACCACGCACACCCTGCCGTTCACCCAGCGGGCGGGAGTGCCCGCCGACCTCGGCGTGGACCGCAGGCGGGTCTCGCACGTCGAGGTGTAC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTAAGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 6333-6122 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000067.1 Actinopolyspora mortivallis strain M5A NODE_67_length_8904_cov_18.4012_ID_2187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6332 28 100.0 33 ............................ GTAGACGAGCACGCTGTGCCGCTGGTCGGGCAT 6271 28 100.0 33 ............................ GTGGTTGGTGGACAACCATTCCTCGGCGGCGGC 6210 28 96.4 33 ..............C............. TGTTGCTGACCGTGCCCTGGGATCGTTTGATTT 6149 28 82.1 0 ...TT......A..C..........T.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 94.6 33 GTAAGCCCCGCGCATGCGGGGATGGACC # Left flank : CCACCTGTTCCGATACGCGTACACGCCTGACGAGACAGCTGAGCTGATCGAGACCGTCCTCACCGAGCCACCGTTGCCGATCTGCGAAATCTACGTGTGGGATCGCCCCTGCCGGTCGATCCGAGACGAGGACGGCCCCGCTTTCCCCGAGGCCGGTCGGTTGCGTATTGCCTGCCCCGCCGATCAACCATGGGCGGCGTTGAACTACATCAACCCCGCAGCACCCGACGGCGCGCTCGTCGACTCCTACAATCCCACCACCACCGACGAGACCCCGGCCCTGCTGTTCGACCCCGAAGGCGACCTGTGGTTTCCCGCCTCAGCCTCACTGCCGCTCGACCAGGCACGCCAAGCCATCGCCGAATACTGCCGCACCGGACAGCGCCCCACCTGCGTGCAGTGGCAACCCGGACAGTGGTACTGACGACCCCAGCCACCACCCCGAGATAAAAGTGATTCCCACAGCGGGACAACGCTGTTAAGATCGCAGGTCGCAAAGG # Right flank : GGTTCCGTCGAGGACCGGCCTGGGTCGGAGAACGTGGTGGTTGAGAAGGGGAAGTGTGTGGCAACACGCCACGAGGTTCCGAAGCACCTGATCGGCGTGTCGATCACGAACCGGTCACAGCCGGAGTGTGGCCATCCCGGAAATCCCTGCTCAACTGCCGTGGCGCCAGCCCTCCGAGGCTGGCGAGGATCGCAACTGGGCGAGTCTGCGACCGAAGCCGCCGAGCGGATCGAGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACCACCACACGATGCTTTTCGCCTTGTCGCGGGCTTTGCGTGGCGCCAGCCCCCCCAGGGCTGGCGAGGAGGAGCACAACCGACACACGTAGGGAGCACGCTGGACAGGAATCGGAGCATCCCCTGCTGCTGGCGCCGTCCGTCTCGGAACAAAAGTGATTCCCACAGCAGCAAAGCACTGTTAAGATCGCAGGTCGCAAAGGGGTAAGCCCCGCGCATGCGGGGATGGACC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 2156-2006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSR01000018.1 Actinopolyspora mortivallis strain M5A NODE_18_length_70655_cov_26.6423_ID_2089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2155 29 100.0 32 ............................. CAGGTGCAGTGCAGCTCTAGCTCGGCGAGCAT 2094 29 93.1 31 ..T........................T. TTCGTCACGGCCGCGCGGCCCTTCGGGGGAT 2034 29 86.2 0 ......T...............C..GG.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGTTCCCCGCACACGCGGGGATGGACCC # Left flank : TGATCCGGGAGGGCTACTACGACTGGCGAGCACTGTGGGGGGACGACAGGATCGCCCCGCACCTGTGGCGTTCGCACAACCCCTACGACAACGTGGAGAGTCTGCGGGGGACGGATCTCTACGTCTCCAGCGGGAACGGGTTGAGCGGGCCGCTGGACGACGGGCCGGGTTTCGACGTGCTGGAGCCCGCCGCGCTGCGGACCTCGGAGTCCTTCGTGCGCAAACTGCGCAGGCGGGACATTCCGGTGACCACCGACTTCTACGGGCCCGGAACGCACAGCTGGCCGTACTGGGAACGTGCGCTGCACCGCTCCTGGCCGTTGTTGAGCCGGGACTTCTACCGCTGAAAGCGGGACCGGACAGCGACCCGGCCGGGTCCGCCCGGCCGGGGCTGCCGGGGGAGTCGTTGTGGTGGTCGGTGTGGGCCGACTAGGATGCGCGTGCTTCCCACGGAAGATCACAAGTGAATAACGCTGATGGAAATCCGCAGGTCAGTACGT # Right flank : GGGCCAGTTTTAGGCAAAATCGGGCCACGCACTCGCGGCACACGCGGGGCATGACATGAAAACGGCGCCCCCGGAACCCTTCCGGGGGCGCCGTGTTGTCGCTACGGGGTCACTCGAAGCGGTTGTTCTTGACCGCGTCGAGGAACGCCGTCCACTGCTGGCGGGTGGTGGTGACGTACCCGGCCGAGCGGTCCTTGGTGTCGCGCACGGCGGCGCCGTCGCCGACGCGGCCGACTTCGACGCAGTTGGTTTGGTTGCTCGATCGGCTGGACTTGCGCCAGTTGTCGGGGGTCTGCGGTAGAGTCACGCTGTATTCTCCAATCGGTTGACCACGGCGGCGATGTGTCCGATCGAGTCCTCCGGGGTCATCGCCGCACGTGCGAGATGATCTCGTGCTTCGAGATAGGCTGTCACGTCATCCTTGTCGCGTAGTGTTGCGCTGGACCTGTGGTGTTCGAGGTGCACTACCGGGTCGGCGCGGTCGAATTCCAACAGAACGA # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //