Array 1 309571-308433 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000021.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 309570 30 100.0 35 .............................. GCGTTCTAAGTTTGATATGTCCCATTCTGTTAAAA 309505 30 100.0 34 .............................. TAAGTAAGAGTAAGAAACATAGTACATTCATGAT 309441 30 100.0 35 .............................. AGAAGTATATGTTAAAGAAGCTAGTGCTGGTGACG 309376 30 100.0 35 .............................. CTATTTTTGTCATAAATATATTTGATAGTTTTTGG 309311 30 100.0 36 .............................. CCAGTTGAAGTATATGAAGTTGATGGTAACTTTACA 309245 30 100.0 34 .............................. TACGTGAGAGTAAGAAACATAGTAGATTGATGGT 309181 30 100.0 36 .............................. AACAATTTATCAACATTCTTTGTAATCTCATTAAAG 309115 30 100.0 36 .............................. TACTCATCTGCGTCTTTGCCTTTACGTTTTTTAACA 309049 30 100.0 36 .............................. TTAGTCTTAGACAAAGAATAATTTTGATAAATTTCC 308983 30 100.0 36 .............................. GCTTTCTAGTGATTGGATAGAAGAAACACAGTCTAC 308917 30 100.0 36 .............................. GAATATGCAGGATAGTCTTTTTATGAATGATGAAAA 308851 30 100.0 35 .............................. CTTCATACCAGCAATTTGCAATATTTTTCCAATAG 308786 30 100.0 36 .............................. TACCGTTAATAATAAAAAGAGGGATTTCTGCTATAA 308720 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 308655 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 308590 30 100.0 34 .............................. GAAAAATTATTTACTGTATTATTTTGAATATCAC 308526 30 100.0 36 .............................. AAATACAACTCTTGCTTATCTCCGTTGTATGTAATT 308460 28 86.7 0 ......................-..-..GT | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.3 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : ATTTTTGTTAATTGTAGCAAACTATTATTGGGGTGATAATAATGAAGAATAATAATAGAAAACAGTCTAAATCAAATGAGGCTCAAAAAACTGCAGTTAACAATCAATGGACTAATAACAATACTAAATATTATCCAGATAATAGAGAACGTCAGGATGGACCTGGTGGTAATTAAGAACCTTTAATTAAAAGTTCTCAGGCTGTTAATAAAGTAAGTTTTTCAAACTGACTTTATCATACAGCCTTTTAAATTAAAAAAAGATTGGTTTTGGAATTTAGTTTTATCAAAATCACTTAGTAGATAATTTGTCAATAAATTTATTTTTTTACCAGGTGAATTTATTAGTGAAACCTCTAAAAATGTTGGGAGAGTAAGAGCTTAAGGGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTTGGGGTATAATAGAATATGAAAAGTGGCTTATTTATTAGG # Right flank : TTTAATTAAAAATATGTTATACAAAGCTCTAATGACAATATTTTTGTATTAGATTTTTTTTATATACCTTATATTTAGTATGTACTTTTATAAAAAAATGAACAAAATGATAACGTTTTCATTAAAAGTGTGTTAGAATGTATATACTATAGCTAATGATAAGGATGATTCTAAGTCAAAGGTTAAACTATTTTTATTATGTTTTTTATTATGTTTAGCCATTAGTATTGTCTGATGGTTTTTTATATAAGGAGGTAAAAATGAATAGTAGAATAGCAATACTTGGTATATTTGTTTATGAGATAGAACGTGCTAACGAAATAAATGATCTCTTACATGAATATAGTCAATATATTATAGGAAGAATGGGGATTCCATATAAAGATAAAGAAGTTTCAGTTATTTCAGTTATTCTAGATGGACCAAATGATATAATTGGTGCTATTTCTGGTAAAATTGGAATGATTAAAGGTGTTAGTGTTAAAGCACTATATTCAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 67435-67934 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000033.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67435 36 100.0 30 .................................... TCAATTCTGTTGAATGTCACTAATGTTGTT 67501 36 100.0 30 .................................... AGAACCATCTTCACAAAGTTCACCTAAACG 67567 36 100.0 30 .................................... AATAAATGTTTGATTAATATCAAGAATACA 67633 36 100.0 30 .................................... ATAATGATCATATTTTAACCAATGCTCGTC 67699 36 100.0 30 .................................... ACATTTTCATTGTTCTATTAACAATATCCA 67765 36 100.0 30 .................................... GCAACTGGTCGAGTATATTTATACATTAAT 67831 36 100.0 30 .................................... TGAACTTTGTGAAATCATCTGGATTTAACG 67897 36 86.1 0 ........................A...T....TTG | A,G [67921,67929] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Left flank : AGAAATTAGTTAAACTGATTGAACCATATGTAGATATAGAAGGTTATAAATGTGATGAATATGATTTAACATATGAAGAAATCATTATTATTCAGTTAAAGCTTGTAAATGAAATAATAAATAATAACCAAAAATACGATTATATCTTTATTATTTTAGATATACCATGTCTTAGAAAAAAAATCCTGGATGCAATATTGCATCTTTCTAATTGTTTTTTATTTATATGTATTAATAGTAATAATCTCATTGAAAATATTAATTTGAAAGATATTTTGTTATTGGAAAATAAAGTAATAGATTTTGCTGATGAGGAAGAAGTATGTGAGATAATATGTAATAACTGTTATAAACCGATTTATTTATACGAGGTGGAAGAGTATATGAAAGAATATTTTATTAATAGTGGTAGTGAAAAGTGTAGCTTTATAAGAAAATTACTGAATAAATAATGATATATATTTATTAATTTTCAAAACTGTGTTAGTATTAGTTTTGAG # Right flank : GGTGGGAGGAATTGTACATTCTTATATTTGAATGATAAAAGAAAGTTAATTAATTAGATTTTAAAATATTATATTGCTTTGGAAATTGATATATGAGGGTATATAAATGTCAATTGAAAAAATAAAAAAATATTTTAATAAATACGGTAGTAAAAAGTGAATATAAAAGTTTGATTGTCTAGTGCTGCTATGGAATTAGCTACTCAGGCTTTGAATTATGAGTCTTATAGAATTGCAATAACACTTTTATTTAAGATTGATATTATGGTATTTTAATAGTTATATTAGGTGATACAAAAATTGATAATTTAATGGTAAAGCATTTTTTTTAAAGCAAAGGCAAATACGCTTTTTTTAGAAGAAATATTAGATTTGATAGATCATGATATAAGTAGTGTTCGTCGTTTTGTTATTAATGCTGATAAAGAATTATGATAGTATTTAAATTATGAATTTTGGATTGATGTTTGTAGGATTGCTTAATTGAATAAAAGGGTTAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 22210-23406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000015.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 22210 31 100.0 35 ............................... CAATTTCGTATTTAACTTTTTTCTTGATTTTTTTC 22276 31 100.0 35 ............................... ATCGTACGATTATAGTAATTAAGCATTGTCTTTTC 22342 31 100.0 36 ............................... TGATATGACTCAGGCTGTTGACAAATAAAAAATTGT 22409 31 100.0 36 ............................... ACATTCCAAAATGTATCAATTGCATATGTATTTTCT 22476 31 100.0 41 ............................... TTTTCCACTGATTAAATCGTTCAACACCTCAATATCATTAT 22548 31 100.0 34 ............................... CAGGCCGAGGACCAATGGCTGGTGAGTTAGTTGT 22613 31 100.0 41 ............................... TTTATCACTATGTGCATCTAAACGTTTATCTTGTCTGGTGT 22685 31 100.0 37 ............................... CCAAATCTTCTCGAACTTCTTCAAATTTAAGCATCTT 22753 31 100.0 45 ............................... ATACTATACCTTTGTTCTAAACGTAACCGTCTTGCTAATTCGTCA 22829 31 100.0 38 ............................... AATTGTTTGTGTAGTAATTTATGTTGCTTATACAATCC 22898 31 100.0 35 ............................... TGATAAATGAGTAGTCAATATCACGTGTTTCTTCA 22964 31 100.0 37 ............................... TCCAATAGTATTAATAATACGTTCTCTTTCTGCTTCC 23032 31 100.0 41 ............................... CTAAAATTTCATTGGGATTATACCCATTATCTTTACACCAG 23104 31 100.0 35 ............................... TTTAACTGATTATTCAGTGCTTTACCAGCATTTTT 23170 31 100.0 38 ............................... AGGGCATAATTTATCTAATAAAAGAATTAACTCTATTT 23239 31 100.0 37 ............................... TTTATCTTTCCATAATCTTTCCATCCAACATTTGCAA 23307 31 100.0 38 ............................... TTTAACTATCTCATTTGAAACTTGCTTAACTACCTTTT 23376 31 93.5 0 ............................A.T | ========== ====== ====== ====== =============================== ============================================= ================== 18 31 99.6 38 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : TATAATTACAAGAGAAGTATATAAGTTATCTAATTATATAGAAGGTAAAAGTAAATATTATAAACCTTATGTAATGGAGTGGTAAAAATGTATATTATTTGTACTTATGATGTAGCAGAAAAAAGATGTGTTAAAGTAATGAAAGTTTTGAGAAAATATATGTTTCATGTTCAAAATTCTGTTTTTGAAGGAGAGTTAACACCCTCTAAATTTAATGAATTAAAAGTTAAATTAGATAAAATAATAAATCCAGATGATGCAATATTGTTTTATTTTGTGTATGAAAACAAAAAAATAAAAAAAGATTATCTTGGAAAAGCACCAAAATCATCAAATATTATAATTTGATTTTCGACTATCCCATTGTTTTTACTGTATGAACAAGAATAAAATAGATGGTTTAAAGGAGGTAGTCGAGATTGTTTGATGAGTATACTATTGATTTTTTAATAGATACAAAGTATCATAGTATATATTTAGATTATTTCTAAATATATACT # Right flank : TTTATTTAATAATTTTTAAAATTATTATTTTTTAAAGATAGTTTTAAGATATTACTAAAAATAAAAAAGGATTAGTACCAATCTTGGTAACTAATCCAGTTTTCATATGGAAACATATGTTTCAGTTTATTACAGGTCTTTTCCTGGGAAATATAGTTTGATATTAGTTGATTTTTTTGTTTGAGTAAATCGTTGTTATAAAGATGTTTCATTGGTAAGATGGGGTTACTTTTACGATAGTAATGCCCAAAATATTTTAAGTTACTAGTTAAATTGATATCTTTTGTTATAGATGTAACAATTGCACTAGTCATTTTATGATGAGCATGACCATATTCACCCTTGGGATTATGGGTAACGATAGTTGCAAAGGTGTGATTAGATAGTATGTAATTTAAATCTTCTTCAATATCATGATAGACTTTTTTCCAATTATCACGCTTACCATTAGTTTTATCAGGATAGTCTAGAATAATTCCAGTATTATGAGTTTGTTCCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-93.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3606-3120 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000020.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3605 30 100.0 36 .............................. CCGTGAGTCTTGTGATTTAGCTATGTTACTTAGAAA 3539 30 100.0 34 .............................. ACGATGTACCTATCAAAGATACAATAGGAAATTA 3475 30 100.0 36 .............................. TAGATTGCATTACCAGTACCAGTATTTTTCAAAAAA 3409 30 100.0 35 .............................. CGAGACATGCGAACAAATTCAGGAACAATATTGAA 3344 30 100.0 34 .............................. CCGCTAACACGATTAGGAACATATCTGTACTCTG 3280 30 100.0 35 .............................. ATAATGCATATATAGATATTCCGTGCGGACAGTGT 3215 30 100.0 36 .............................. TTTTTCCATTCAACACCTTTTCCTGTATCAGGGTTG 3149 30 70.0 0 ........G..G...GTAC.A....T...T | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 96.2 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : CACTTGTATTGATTCCATTTAATGTTAGTTATGATTTAAGCTTGATTGTTACGTCATTAGCTGCAGTTATATTTGGTGGAATTATTGTCTTAGGATTATCAAAAATTCAGTAGTATTAAGATCAATAATGCTTTTAGTATTATTGATTTTTTTTATGTGAAGTATTAGCGAATCAATTTTTTCATAAAAAGTATAGTTTTTTAATATTAGTGATTTTTAGATTTGATTAGTGGTAAATAGGTTATTAAGTTTTGAATATTTTAGCATTGATTTAATATTTTTAGTATTTATAATTTTTATATTTGAAAGAGTAGAAATCAGTGATTTTTACCAGCCGTATTTTGCAGTGAAATTTTTAAAACTGTTGGGAGAGTAAGAAGTTAAAGGGATTTTACTAAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTAGGGGTATAATAGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : AAATTTTTAGTAATAATTTTAAATGTCTTTATTTTGTTTTATAACAATATAATGTATTAAAAAATTGTGAATAACTTGTGACTAAAGTGAATATCTTTCAGTAAGGATAACTATTGTTATTTTTTGGTTCAGTTATATTATGTAATAAATCCTAAATTCTATGATTATTATCATAATATGATAACATCAATTTTAAATAGAGGATTATATTTTCTAAATTTGAGGTTGTTCATTAAGTCACAAAAATCTTACCTGAATTTTTTTATTTAATTGCTGATTTTCATTGTTAATGCTTTTTTGAGTTTATCAATATGATGAGATATTTTGTAATATAATTATTAAAAACTAATTTTTAATAAGACATGGAGTTATTTATTTTTATACTTTTGATCTTAGTTAATAATTTTGATACGATTATGTAAATGATGTTGATAATACTATTGGGGTAACTGTTAATGGTATATAAAGATTATTATTTGTATGGGAATTTTTTAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 3905-3024 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000026.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3904 30 100.0 36 .............................. CCAGTTAAATCAAATGGAATTTTTTCTTTAGAAGCA 3838 30 100.0 36 .............................. TTTGATTAATTAAATTAGTTAAATTCATAAAAATCC 3772 30 100.0 34 .............................. GCTAAATGCCAAGCGTCCAAAGATTGTTTATAAT 3708 30 100.0 35 .............................. CTGACGAGGTAAACAATGCCAAAAAACGTGAAGAG 3643 30 100.0 36 .............................. AGAGTCTAGATATAAGAGATATAGATAAAAAAGATA 3577 30 100.0 36 .............................. TCATTCTCAGTTGTTTGCAAATCGTTGGTTTTAGAC 3511 30 100.0 35 .............................. AAGTAGCAACCCTAATAATTTGGTTATATATGGAT 3446 30 100.0 35 .............................. CCTCCTTTAAAGCTCTCGAATTAATTTAGAAACAC 3381 30 100.0 35 .............................. GGACCTTTTTGAGGAGAAGGAAGAGCACTAGTGAA 3316 30 100.0 37 .............................. ATGTTTCTAAGTAACATGGCTAAATCACAAGACTCAC 3249 30 100.0 35 .............................. AAAGAGCTCCGCCCTGATAACTACGGTCGGGACTG 3184 30 100.0 36 .............................. CGACGAACATCTTCAGGGAGTCCGTTAAACAGATTT 3118 30 100.0 35 .............................. GCACCTTTTTATGTGAATAAGGATGGGTTATATGA 3053 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : GAAACCATTTATACCTTTTTCAATAAAGGATAAATATTAATGAAGATAAAAAATTATAATTATGTAATTGTATGTTACGATATTGGGGAAAAAAGAGTAAATAAAATATTTAAGATATGTAAAAAGTATCTTCCTCATTATCAATATTCTATTTTTAAAGGTCCCATTACACCTTCTAAATTGATTTTATTGAAAAAAGAATTACGAAAAGCTATAAATAAAGAAGAAGATTGTGTTAGTATTATTAAATTACAAAGTGAAGATTCGTTTGATGAAGAGGTTTTAGGAAGTCAAAAAGAAGAAAATAAAGATAGTTTAATTATATAATTTACCAGGTGAATTTATTAGTGAAACTTCTAAAACCATTGGGAGAGTAAGAAGTTAAAGGAATTTTACTAAAAAATATAAAAAATAAAATTGCCTGGTAAAAAAATATAAAAGTGTTGATATATAAAGGTTTTGAGGTATAATGGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : TATATTTTTTTTGCATTAGTTGTCTCAATGATTTTAGTTTAGATATATTAAAATTCTGTGAGGGTTAAACTTAAAATATTTATGATATATACTATAATTAGAGAGTAATTAATAATATGAATAGCATCATTTGATAAATTGTGGTAAACTTTGAAACATGGAGTGTAGGTATGAAGAATAAATATGTGGTTTTAGATTTTGAAACGACTGGAATAAATAAATATTATGATGAAGTAGTCCAAGTAGCAATAATTAATCAGAATGAAGAAATTTTAATTAATGAATTGTGTAAACCAAAACATCATTTTACTTGGGTAAATGCACAAAAAATACATGGAATATCTCCAGCCATGGTAAAAGATAAACCTAGTTTTGAAAGTTATATTGAGATGATAAAGAATATATTTGATAGTTGTGACTTTATTGTTTGCTACAATGTTGCATTTGAGCAAGGTATATTAAAGAATTATGGGATAAATATAGATAAATATAAATTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 22883-22187 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000026.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22882 36 100.0 30 .................................... ACATTTATTTCCATTTTTATAAGTGCCATT 22816 36 100.0 30 .................................... TAAAATTTTTTCATGGTATGCCTCTGTTGA 22750 36 100.0 30 .................................... ACAATGAAGAACTGTACGATATCACCGAAC 22684 36 100.0 30 .................................... TATTATTTCTTTGTTCCTAACAGATTGACT 22618 36 100.0 30 .................................... TTCCAATCCAAAAACAATAACATGATAGTG 22552 36 100.0 30 .................................... TCCAGAATTTTTAAGCGAAGCAATAGCATC 22486 36 100.0 30 .................................... TTCTTTCCAATGGTCCCAAGTCAACCTATT 22420 36 100.0 30 .................................... AATATCTGCGGGATAGTATAAGTAGTAGTA 22354 36 100.0 30 .................................... AGCATTTCGTATGATAAATCTAACGGGCAT 22288 36 100.0 30 .................................... ATACCATATGGAATATCTGACAAAATCAGG 22222 36 83.3 0 .........................GA.TTT....T | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Left flank : GTATTAGCAAAAATATATATGACAATAAAAAATAATATAATAGATGATATAGATAAAGAAACCACTCTTTTAAATGATATAAATAAAGTAAATGGTTTATTTATTGAGGAACTGGAAAATTATAATTTAGATTATTCTTATGAGACGAATATAAAGATAGAAAATTATTTAAAACTGTTAAATTTAAAAATAGTAAGTTCTGGAGAATCAGTATTTAATAAGATGATAGATTTAATTGAGATTTATTCAGAATTGTTTAATGAACATGTTATAATATTTATAAATATTATGTCGTATTTGAGTGATGATGAACTAGAGGAAGTCTTAAAATATAAGAGGTATAAAAAATTAAAATGTATTTTTATTGAGAATAATTTTACTAGAAATATAATAGCAAATAAGTATATAATAGATGATGATCTATATATGTATAAATTATAACACTATCTAAATTATGGATGAAGTCGTTATTCATTTATACTTTTAAAACCTAATTTGAG # Right flank : CAATAGACTAAATCACATATTTAGAAGGACTTGGAGTAAAAATTATTTATAGTGATGCACAAATTAATAATATCATTATTGATAATAAGATTTTATGGATTCCAAATTATGGGTATTATGAAAAACAAAAGAATGTAAATGCATTTCGCATTAAAGATGTTAATGTGATTGAGGAAATTATTTCAATGATAAAAGATAATGATTGAGATGATTGATAATAAATGTGGTATACTATAGGGGGCATATAATATACTTATTATTTGGAGGTGTTTGGATGAAAAGGGTTCCAATTGGTGTAGAAGATTTTAAAGAACTGATTTCTAATAATTATTATGTAGATAAAAGTGAATTGATTAAAGATATGATAAATGAAAAAGTTGTTTTATATACTAGACCAAGAAGATTTGGTAAAACATTAAATATGAGTATGTTATATTATTTCTTTTCAATTAAACAAAAAGATAATGCTCATTTATTTAAGGGATTAAAAATAGAAAAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 211420-210844 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQR01000026.1 [Clostridium] cocleatum strain I50 14_Assembly.final.scaffolds_scaffold4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 211419 30 100.0 36 .............................. CCGATATTAGCAAAAACGGGCCAATAGTAATCAAAA 211353 30 100.0 35 .............................. CCAGAAACACGATTAGGAATGTATCTATACTCTGC 211288 30 100.0 37 .............................. ATCCATATATAACCAAATTATTAGGGTTGCTACTTTT 211221 30 100.0 36 .............................. CCGGGAAGCACCTCCATAACATCGAAAGGAACTAAA 211155 30 100.0 36 .............................. GTATGCTGAAATTCAATCTTACCGTGAGAATTGTGA 211089 30 100.0 54 .............................. AGAGAAGTAGTATAATCACTTCGCATTTCACCAGAAACACGATTAGGAACGTGT 211005 30 100.0 37 .............................. GAAATATACTGCGGATTTAAACGCTTGGTCTAATAAA 210938 30 100.0 35 .............................. GTTTTTTCAAAATATTTATTCATAATTTCAATTGC 210873 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ====================================================== ================== 9 30 99.3 38 GTTTAATAACAACATAGGATGTATTGAAAC # Left flank : TGATGGATGGTACATTTATTGAAAATAGAGAAGAATTTAGAGTTATATTTGAAGAATTAATGAATAAAAATGATGAATATTTTGTTTTAGCTGATTATGATGCTTATTGTAAAGCTCAAATGCAGGTAAGAGATTTATACCAAAATCGTTTAGGTTGGGCTAAAGTATGTTTAATTAACATAGCTAAGAGTGGTTTCTTCTCATCGGATCGTACTATACAAGAATATGTTGATGATATCTGGCATTTAGAAAAGGTAAAATTTTAGAAATATAAAAAGTTAAAGGAATTGGTTTATATGAAATCAGTTCCTTTATTATTGGTATAAATTTACCAGGTGAATTTATTAGTAAAACCTCTAAAAACGTTGGGAGAGTAAGGGATTAAGAGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGGTTTGAGGTATAATAGAATATGAAAAGTGGCTTATTTACTAG # Right flank : TTAATTAATTATATAAAAATATAATAAGTTATATGCTTGTGAAGCTTTGTTTATAGGTTTTATAGGCAGTTTATTATCTTTGAACTCAAAAGCTATATAAATATAATCTTTATTTTTAATAAAGAAACAGTTTAGTTTTTTATTATTTAGTTTAAGATTATAAATGAATAAGTATAATTTAACTTGAATAATTGTATAATAAAAGGAAAGATAAGTATTTTTTATTGCATTGCCTTAGTTAAGAATATAGGCTATAATGAGGTAGAAAAATGGGGTGAAATTATGGAAAAAAGTGCCGTTAGAATGATTGCACAAATGATAGCTTTGAAAAAAATAGAAGTATTACTCTTAAAAAAGTACTATGAAGGTAATAGTCCAAGGTTTTATTTACGTGATTTAAATAGCGGTGATTTAAAAGAAATAAAAATTTCAGGTAAATATGTGGAAGAACAATTTGTACATTACTATTTCGATGATATTGAAATAGATTTTTGTCGTAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //