Array 1 352838-353842 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUK02000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0208 NODE_2_length_580792_cov_42.105894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 352838 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 352899 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 352960 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 353021 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 353082 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 353143 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 353204 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 353265 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 353326 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 353387 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 353448 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 353509 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 353570 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 353631 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 353692 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 353754 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 353815 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 370111-372153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUK02000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0208 NODE_2_length_580792_cov_42.105894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370111 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 370172 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 370233 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 370294 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 370355 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 370416 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 370477 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 370538 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 370599 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 370660 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 370721 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 370782 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 370843 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 370904 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 370965 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 371026 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 371087 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 371148 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 371209 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 371270 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 371331 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 371392 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 371453 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 371514 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 371575 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 371636 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 371697 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 371758 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 371819 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 371880 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 371941 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 372002 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 372063 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 372124 29 96.6 0 A............................ | A [372150] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //