Array 1 1793-40 **** Predicted by CRISPRDetect 2.4 *** >NC_014010.1 Candidatus Puniceispirillum marinum IMCC1322, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1792 36 83.3 30 TGG.GGG............................. TTCGGCGGTCAACCCATCATCGAGGGATCG 1726 36 100.0 31 .................................... AACTGGCATTCTTTCAGGAAGTAGCGGGTAA 1659 36 100.0 30 .................................... GATATCGCGCGCAGGATCAAGCTCAATCCA 1593 36 100.0 30 .................................... TCTGGCGACGGTGGATCGTCTGAATCGGAA 1527 36 100.0 30 .................................... CCCAAACGAGCTGGATTTTTAGGATCACCG 1461 36 100.0 30 .................................... ACCAGAAGTCTTAAGTAGACCAAGCGATTG 1395 36 100.0 31 .................................... TTGACGCTTCGTAACCAGCAGTACCTATTGA 1328 36 100.0 30 .................................... CTGCCCATTCGGATTGGAAGCCCTGCAACT 1262 36 100.0 30 .................................... CCATTTCAGTTTGTCCGATAAATTGCCAGT 1196 36 100.0 30 .................................... ATATAAATTATTGGACGTTACCGTCCAACG 1130 36 100.0 30 .................................... AATCGGTGATAAATGGTCTAAAGCTGTTGA 1064 36 100.0 30 .................................... ATGAAAGCTATAAGGTCTTGCGCCGTTCTT 998 36 100.0 30 .................................... TTCAGGGGCTGGCGGCACTACCTGTCCTTC 932 36 100.0 30 .................................... CATGATGACAGGTATTATATCTGTCCACCA 866 36 100.0 30 .................................... GGCCAAGGACGGCAGGCACACCAACTTTCA 800 36 100.0 30 .................................... TAGTGTTTTCTTTTCGTCACGCGATTTTAT 734 36 100.0 30 .................................... GCTGTCAGTTGAACGCCGCCCGCCGCCATA 668 36 100.0 29 .................................... AACATCGATTTGTTGTGTTGCCTTATAGT 603 36 100.0 30 .................................... TTGTGCCTCAGCCGATAGTGCCTTGGCATA 537 36 100.0 30 .................................... GGATCGATCCGGTTCTATGAAGCCCGCACG 471 36 100.0 30 .................................... GACGCAGTTGGACATGTGGACATCATTACC 405 36 100.0 30 .................................... TAGATGGCAGTGAACGATTAGGTATATTCA 339 36 100.0 30 .................................... AAGTCAAAGTGATAAATGAATTCTGCTCAT 273 36 100.0 30 .................................... GCGCCGCGACTTGCGGCACAATGGCGTTAC 207 36 100.0 30 .................................... GCCGTGCGGTGATGCGATATCAAGCGGTCA 141 36 100.0 30 .................................... GGAAGGGTTTATCTGCTTGAGACCACCACG 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.4 30 GTTGCTCTAGGCTCTCAATCACCAGAGTGCTATACT # Left flank : AGCCATCTATTGGCGCCCATCGGTGTTGTTATAGAGCCTGAATAGACCGTCGCCCCGCGCGACATGATTTTTCAAAATTCCTAGAGGTTCCCACTGGCAGCACCGATGCATGGCACGGCTTTGGTCGTTCATGTGTGGGTGCTGTCCTTTTTATTCAAAGGATAGATGATATGAGACGCACAATTTTTCATCGGTTTGGCTATGTCTGTTTAGGGTTTGGCCATGCTTGTCTGCATAAGCTGGCCAGATGCCCGCGCCCGCGCACCGGCCTTGGCCGCGCCGGTTGTGTGTTTGTCATTATGGCGCTGGCGGTAATGGTGGTAAGCGCGATCATAACCCCGCCCACATCGCATCAGCAGGCGGCAGCAACACCCGCCGATATGGCCATCATCCACCGTATGATGCAGGATCAGCGCGCCATTGCCCGCGCCACCCGTACCTATACGCTATCGACCTTTGCCGAACGTTTCGGCCATAAAGGGGATTAGGGGATGGGGTAT # Right flank : TGCAGCTCACTATCTCACAAAACACCTCACAGTTGCTCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCTAGGCTCTCAATCACCAGAGTGCTATACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 2753369-2753527 **** Predicted by CRISPRDetect 2.4 *** >NC_014010.1 Candidatus Puniceispirillum marinum IMCC1322, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 2753369 37 100.0 29 ..................................... TCTTCGGTCTCGTCGAACCTTTCGTAGGA 2753435 37 100.0 29 ..................................... CTATAAGTCAACACAACAAATCGATGTTG 2753501 27 73.0 0 ...........................---------- | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 91.0 30 AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACG # Left flank : AGTGATCAGGCTGTTGTGGGGGCTACATCACCATTATTTCAGCATATGAGCCAGTTAAGCTACTCGCTATGGGAAAATCTTGATGGACAGAAGACAACCATGCCAATGCCGCAATTGATACCCGAACTGGAAATTGAGGCAATGGTTTCCGAATGCTGAGTGGGTATCGACTTTTGTGGATTATGACTCTATTCGACTTGCCGGTGGTAACCAAAGCTGAGCGTAAAAGGGCGACTGTTTTCCGTAACAAACTGCTCGATTTGGGTTTCGAAATGGTGCAATATTCTGTTTATATGAAGCATGTAGCTGGTAAAGAACAGGCCGAAGCGATACAGGTAAAGATCAAAGACGCTGTGCCGGAATATGGAAATGTTAAACTTTTACTTATCACGGACAGGCAATTTGGAAATATCCTCCACCTTGGAAGACATTCCAAACGCCCTATTAACGCCGATCAACTGGCACTTTTCTGATATAAAACAAAAACTTGCAAAAACCTT # Right flank : | # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //